Sequence Similarity Clusters for the Entities in PDB 3S9M

Entity #1 | Chains: A,B
Transferrin receptor protein 1 protein, length: 654 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 17610
95 % 6 13 2225 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 6 13 2281
70 % 6 13 2346
50 % 6 13 2382
40 % 6 13 2409
30 % 6 13 2416
Entity #2 | Chains: C,D
Serotransferrin protein, length: 693 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15212
95 % 21 24 1731 Flexibility: Medium
Max RMSD: 8.8, Avg RMSD: 5.0
PDBFlex
90 % 21 24 1765
70 % 23 26 1716
50 % 53 58 893
40 % 53 58 924
30 % 53 58 971

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures