4IQJ

Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome


Sequence Similarity Clusters for the Entities in PDB 4IQJ

Entity #1 | Chains: E,G,K
DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*A)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H,J,L
DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*GP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*CP*G)-3') dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I
DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DOC))-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B,C,D
DNA polymerase III subunit alpha protein, length: 1220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 18121
95 % 2 4 12010
90 % 2 4 11863
70 % 2 4 11625
50 % 2 4 10431
40 % 2 4 9878
30 % 2 7 6735
Entity #5 | Chains: M,N,O,P
C-terminal domain of the DNA polymerase III subunit tau protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29803
95 % 1 1 25991
90 % 1 1 25164
70 % 1 1 22913
50 % 1 1 20169
40 % 1 1 18468
30 % 1 1 15727

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures