Sequence Similarity Clusters for the Entities in PDB 4RET

Entity #1 | Chains: A,C
Sodium/potassium-transporting ATPase subunit alpha-1 protein, length: 1021 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5005
95 % 6 10 4222 Flexibility: Medium
Max RMSD: 12.6, Avg RMSD: 6.5
PDBFlex
90 % 6 10 4279
70 % 22 32 1720
50 % 27 44 1327
40 % 27 44 1373
30 % 27 44 1402
Entity #2 | Chains: B,D
Sodium/potassium-transporting ATPase subunit beta-1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6565
95 % 6 8 4912 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 4709
70 % 6 9 4660
50 % 22 31 1840
40 % 22 31 1877
30 % 27 43 1444
Entity #3 | Chains: E,G
Na+/K+ ATPase gamma subunit transcript variant a protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8584
95 % 5 6 7473 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 6 7445
70 % 5 6 7282
50 % 5 7 6150
40 % 5 7 5972
30 % 5 7 5688

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures