Sequence Similarity Clusters for the Entities in PDB 4RET

Entity #1 | Chains: A,C
Sodium/potassium-transporting ATPase subunit alpha-1 protein, length: 1021 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5484
95 % 6 10 4293 Flexibility: Medium
Max RMSD: 12.6, Avg RMSD: 6.5
PDBFlex
90 % 6 10 4345
70 % 22 32 1737
50 % 27 44 1344
40 % 27 44 1395
30 % 27 44 1424
Entity #2 | Chains: B,D
Sodium/potassium-transporting ATPase subunit beta-1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6657
95 % 6 8 5007 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 4798
70 % 6 9 4751
50 % 22 31 1888
40 % 22 31 1926
30 % 27 43 1481
Entity #3 | Chains: E,G
Na+/K+ ATPase gamma subunit transcript variant a protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8788
95 % 5 6 7537 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 6 7686
70 % 5 6 7514
50 % 5 7 6064
40 % 5 7 5903
30 % 5 7 5826

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6JXH 1 A Potassium-transporting ATPase alpha chain 1 9823 7.2.2.19 | Details
2 6JXJ 1 A Potassium-transporting ATPase alpha chain 1 9823 7.2.2.19 | Details
3 6JXI 1 A Potassium-transporting ATPase alpha chain 1 9823 7.2.2.19 | Details
4 2ZXE 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
5 5AW9 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
6 5AVQ 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
7 5AVU 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
8 5AVW 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
9 5YLU 1 A Potassium-transporting ATPase alpha chain 1 9823 7.2.2.19 | Details
10 5YLV 1 A Potassium-transporting ATPase alpha chain 1 Chain A is N-terminal deletion mutant starting Met49 and its N-terminus has TEV protease site. Cleavaged by TEV protease, glycine residue is left in front of Met49. 9823 7.2.2.19 | Details
11 3A3Y 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
12 5AW8 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
13 5AVR 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
14 3WGU 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 UNP RESIDUES 5-1020 9823 7.2.2.13 | Details
15 3WGV 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 UNP RESIDUES 5-1020 9823 7.2.2.13 | Details
16 5AW6 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
17 5AVT 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
18 5AW4 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
19 4HYT 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 9823 7.2.2.13 | Details
20 5AVV 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
21 5AVS 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
22 5AW7 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
23 4RES 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 9823 7.2.2.13 | Details
24 3KDP 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 ALPHA chain (UNP RESIDUES 24-1021) 9823 7.2.2.13 | Details
25 5AW5 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
26 5AW2 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
27 4RET 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 9823 7.2.2.13 | Details
28 5AW0 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
29 5AVZ 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
30 3B8E 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 residues 19-1016 9823 7.2.2.13 | Details
31 5AW1 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
32 5AW3 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
33 5AVX 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
34 5AVY 1 A Na, K-ATPase alpha subunit 7797 3.6.3 | Details
35 4HQJ 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 9823 7.2.2.13 | Details
36 6JXK 1 A, E Potassium-transporting ATPase alpha chain 1 9823 7.2.2.19 | Details
37 3N23 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 ALPHA chain (UNP RESIDUES 30-1021) 9823 7.2.2.13 | Details
38 4XE5 1 A Sodium/potassium-transporting ATPase subunit alpha-1 BFD374 is an aspartate 374 that is covalently modified with beryllium fluoride 9913 7.2.2.13 | Details
39 5Y0B 1 A Potassium-transporting ATPase alpha chain 1 9823 7.2.2.19 | Details
40 4UX1 1 A POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 9823 7.2.2.19 | Details
41 4UX2 1 A POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 9823 7.2.2.19 | Details
42 2YN9 1 A POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 9823 7.2.2.19 | Details
43 2XZB 1 A POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 9823 7.2.2.19 | Details
44 3IXZ 1 A Potassium-transporting ATPase alpha Gastric H+/K+ ATPase subunit alpha 9823 7.2.2.19 | Details