Sequence Similarity Clusters for the Entities in PDB 4RET

Entity #1 | Chains: A,C
Sodium/potassium-transporting ATPase subunit alpha-1 protein, length: 1021 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5267
95 % 6 10 4308 Flexibility: Medium
Max RMSD: 12.6, Avg RMSD: 6.5
PDBFlex
90 % 6 10 4358
70 % 22 32 1755
50 % 27 44 1364
40 % 27 44 1420
30 % 27 44 1444
Entity #2 | Chains: B,D
Sodium/potassium-transporting ATPase subunit beta-1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7205
95 % 6 8 5402 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 4994
70 % 6 9 4935
50 % 22 31 1932
40 % 22 31 1963
30 % 27 43 1480
Entity #3 | Chains: E,G
Na+/K+ ATPase gamma subunit transcript variant a protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8814
95 % 5 6 7753 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 6 7717
70 % 5 6 7529
50 % 5 7 6315
40 % 5 7 5935
30 % 5 7 5831

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WGU 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 UNP RESIDUES 5-1020 9823 7.2.2.13 | Details
2 3WGV 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 UNP RESIDUES 5-1020 9823 7.2.2.13 | Details
3 4HYT 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 9823 7.2.2.13 | Details
4 4RES 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 9823 7.2.2.13 | Details
5 3KDP 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 ALPHA chain (UNP RESIDUES 24-1021) 9823 7.2.2.13 | Details
6 4RET 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 9823 7.2.2.13 | Details
7 3B8E 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 residues 19-1016 9823 7.2.2.13 | Details
8 4HQJ 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 9823 7.2.2.13 | Details
9 3N23 1 A, C Sodium/potassium-transporting ATPase subunit alpha-1 ALPHA chain (UNP RESIDUES 30-1021) 9823 7.2.2.13 | Details
10 4XE5 1 A Sodium/potassium-transporting ATPase subunit alpha-1 BFD374 is an aspartate 374 that is covalently modified with beryllium fluoride 9913 7.2.2.13 | Details