Sequence Similarity Clusters for the Entities in PDB 4RET

Entity #1 | Chains: A,C
Sodium/potassium-transporting ATPase subunit alpha-1 protein, length: 1021 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5126
95 % 6 10 4285 Flexibility: Medium
Max RMSD: 12.6, Avg RMSD: 6.5
PDBFlex
90 % 6 10 4337
70 % 22 32 1737
50 % 27 44 1363
40 % 27 44 1416
30 % 27 44 1444
Entity #2 | Chains: B,D
Sodium/potassium-transporting ATPase subunit beta-1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7201
95 % 6 8 5414 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 4979
70 % 6 9 4935
50 % 22 31 1922
40 % 22 31 1958
30 % 27 43 1486
Entity #3 | Chains: E,G
Na+/K+ ATPase gamma subunit transcript variant a protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8748
95 % 5 6 7598 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 6 7581
70 % 5 6 7409
50 % 5 7 6266
40 % 5 7 6084
30 % 5 7 5801

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WGU 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
2 3WGV 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
3 4HYT 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
4 4RES 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
5 3KDP 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 BETA chain (UNP RESIDUES 18-303) 9823
6 4RET 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
7 4HQJ 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
8 3N23 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 BETA chain (UNP RESIDUES 27-303) 9823
9 4XE5 2 B Sodium/potassium-transporting ATPase subunit beta 9913