Sequence Similarity Clusters for the Entities in PDB 4RET

Entity #1 | Chains: A,C
Sodium/potassium-transporting ATPase subunit alpha-1 protein, length: 1021 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5139
95 % 6 10 4155 Flexibility: Medium
Max RMSD: 12.6, Avg RMSD: 6.5
PDBFlex
90 % 6 10 4317
70 % 22 32 1712
50 % 27 44 1327
40 % 27 44 1383
30 % 27 44 1403
Entity #2 | Chains: B,D
Sodium/potassium-transporting ATPase subunit beta-1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7047
95 % 6 8 5299 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 4914
70 % 6 9 4830
50 % 22 31 1893
40 % 22 31 1931
30 % 27 43 1464
Entity #3 | Chains: E,G
Na+/K+ ATPase gamma subunit transcript variant a protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8555
95 % 5 6 7388 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 6 7423
70 % 5 6 6733
50 % 5 7 6168
40 % 5 7 5820
30 % 5 7 5786

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WGU 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
2 3WGV 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
3 4HYT 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
4 4RES 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
5 3KDP 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 BETA chain (UNP RESIDUES 18-303) 9823
6 4RET 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
7 4HQJ 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 9823
8 3N23 2 B, D Sodium/potassium-transporting ATPase subunit beta-1 BETA chain (UNP RESIDUES 27-303) 9823