Sequence Similarity Clusters for the Entities in PDB 4RET

Entity #1 | Chains: A,C
Sodium/potassium-transporting ATPase subunit alpha-1 protein, length: 1021 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5102
95 % 6 10 4246 Flexibility: Medium
Max RMSD: 12.6, Avg RMSD: 6.5
PDBFlex
90 % 6 10 4295
70 % 22 32 1716
50 % 27 44 1317
40 % 27 44 1378
30 % 27 44 1399
Entity #2 | Chains: B,D
Sodium/potassium-transporting ATPase subunit beta-1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6615
95 % 6 8 4972 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 4752
70 % 6 9 4702
50 % 22 31 1867
40 % 22 31 1907
30 % 27 43 1463
Entity #3 | Chains: E,G
Na+/K+ ATPase gamma subunit transcript variant a protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8244
95 % 5 6 6742 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6757
70 % 5 6 6645
50 % 5 7 5973
40 % 5 7 5817
30 % 5 7 5548

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WGU 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
2 3WGV 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
3 4HYT 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
4 4RES 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
5 4RET 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
6 4HQJ 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
7 2MKV 1 A Sodium/potassium-transporting ATPase subunit gamma UNP residues 9-66 9606