Sequence Similarity Clusters for the Entities in PDB 4RET

Entity #1 | Chains: A,C
Sodium/potassium-transporting ATPase subunit alpha-1 protein, length: 1021 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5484
95 % 6 10 4293 Flexibility: Medium
Max RMSD: 12.6, Avg RMSD: 6.5
PDBFlex
90 % 6 10 4345
70 % 22 32 1737
50 % 27 44 1344
40 % 27 44 1395
30 % 27 44 1424
Entity #2 | Chains: B,D
Sodium/potassium-transporting ATPase subunit beta-1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6657
95 % 6 8 5007 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 4798
70 % 6 9 4751
50 % 22 31 1888
40 % 22 31 1926
30 % 27 43 1481
Entity #3 | Chains: E,G
Na+/K+ ATPase gamma subunit transcript variant a protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8788
95 % 5 6 7537 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 6 7686
70 % 5 6 7514
50 % 5 7 6064
40 % 5 7 5903
30 % 5 7 5826

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WGU 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
2 3WGV 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
3 4HYT 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
4 4RES 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
5 4RET 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
6 4HQJ 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
7 2MKV 1 A Sodium/potassium-transporting ATPase subunit gamma UNP residues 9-66 9606