Sequence Similarity Clusters for the Entities in PDB 4RET

Entity #1 | Chains: A,C
Sodium/potassium-transporting ATPase subunit alpha-1 protein, length: 1021 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5357
95 % 6 10 4121 Flexibility: Medium
Max RMSD: 12.6, Avg RMSD: 6.5
PDBFlex
90 % 6 10 4270
70 % 22 32 1705
50 % 27 44 1306
40 % 27 44 1361
30 % 27 44 1390
Entity #2 | Chains: B,D
Sodium/potassium-transporting ATPase subunit beta-1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6223
95 % 6 8 5280 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 4904
70 % 6 9 4844
50 % 22 31 1887
40 % 22 31 1920
30 % 27 43 1472
Entity #3 | Chains: E,G
Na+/K+ ATPase gamma subunit transcript variant a protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8236
95 % 5 6 6720 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6751
70 % 5 6 6643
50 % 5 7 5965
40 % 5 7 5798
30 % 5 7 5523

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WGU 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
2 3WGV 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
3 4HYT 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
4 4RES 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
5 4RET 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823
6 4HQJ 3 E, G Na+/K+ ATPase gamma subunit transcript variant a 9823