4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 394
95 % 2 70 512
90 % 2 76 502
70 % 2 93 447
50 % 2 190 248
40 % 2 194 251
30 % 2 194 269
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 343
95 % 2 80 450
90 % 2 92 417
70 % 2 185 243
50 % 2 200 223
40 % 2 208 225
30 % 2 208 243
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1554
95 % 2 65 607
90 % 2 68 615
70 % 2 84 522
50 % 2 84 554
40 % 2 84 590
30 % 2 84 610
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 355
95 % 2 78 461
90 % 2 90 424
70 % 2 95 434
50 % 2 197 233
40 % 2 197 245
30 % 2 197 261
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1132
95 % 2 51 759
90 % 2 53 754
70 % 2 85 495
50 % 2 85 525
40 % 2 88 551
30 % 2 88 576
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 354
95 % 2 78 458
90 % 2 90 426
70 % 2 190 233
50 % 2 197 234
40 % 2 205 230
30 % 2 206 245
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 345
95 % 2 92 400
90 % 2 92 416
70 % 2 198 197
50 % 2 199 227
40 % 2 199 239
30 % 2 199 255
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 520
95 % 2 68 534
90 % 2 68 556
70 % 2 86 483
50 % 2 179 288
40 % 2 186 282
30 % 2 187 301
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 340
95 % 2 92 401
90 % 2 92 418
70 % 2 92 446
50 % 2 190 244
40 % 2 198 244
30 % 2 199 256
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 398
95 % 2 70 530
90 % 2 82 483
70 % 2 82 511
50 % 2 176 293
40 % 2 176 303
30 % 2 176 328
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 593
95 % 2 51 772
90 % 2 51 804
70 % 2 59 750
50 % 2 68 702
40 % 2 133 398
30 % 2 133 414
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 364
95 % 2 76 471
90 % 2 88 445
70 % 2 183 247
50 % 2 192 240
40 % 2 202 233
30 % 2 202 251
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 368
95 % 2 74 484
90 % 2 74 511
70 % 2 86 482
50 % 2 174 301
40 % 2 174 313
30 % 2 178 321
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 372
95 % 2 74 485
90 % 2 74 510
70 % 2 86 481
50 % 2 86 514
40 % 2 88 524
30 % 2 88 556
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 375
95 % 2 73 493
90 % 2 85 462
70 % 2 85 491
50 % 2 171 309
40 % 2 171 320
30 % 2 171 341
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 353
95 % 2 94 397
90 % 2 94 412
70 % 2 201 200
50 % 3 213 207
40 % 3 214 219
30 % 3 214 234
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 358
95 % 2 90 409
90 % 2 90 429
70 % 2 204 184
50 % 2 214 206
40 % 2 214 220
30 % 2 214 235
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 356
95 % 2 78 466
90 % 2 90 435
70 % 2 90 461
50 % 2 192 251
40 % 2 192 267
30 % 2 192 283
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 584
95 % 2 50 789
90 % 2 50 816
70 % 2 58 760
50 % 2 58 790
40 % 2 58 819
30 % 2 60 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 552
95 % 1 47 739
90 % 1 51 746
70 % 1 51 771
50 % 1 85 541
40 % 1 85 577
30 % 1 85 595
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 367
95 % 2 87 430
90 % 2 87 457
70 % 2 175 264
50 % 2 187 255
40 % 2 187 271
30 % 2 187 286
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 373
95 % 2 74 488
90 % 2 84 469
70 % 2 91 454
50 % 2 97 465
40 % 2 161 333
30 % 2 161 354
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 71 397
95 % 2 90 406
90 % 2 90 427
70 % 2 191 231
50 % 2 202 218
40 % 2 203 232
30 % 2 203 250
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 374
95 % 2 72 492
90 % 2 73 514
70 % 2 169 275
50 % 2 177 294
40 % 2 177 304
30 % 2 177 329
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 362
95 % 2 95 473
90 % 2 107 447
70 % 2 111 453
50 % 2 167 360
40 % 2 167 374
30 % 2 167 393
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 749
95 % 1 43 928
90 % 1 43 959
70 % 1 78 613
50 % 1 82 615
40 % 1 82 649
30 % 1 82 673
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 388
95 % 3 77 443
90 % 3 77 472
70 % 3 77 501
50 % 5 176 273
40 % 5 182 261
30 % 5 183 278
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1008
95 % 1 27 1351
90 % 1 27 1394
70 % 3 33 1210
50 % 3 33 1266
40 % 3 33 1301
30 % 3 33 1341
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 281
95 % 2 97 373
90 % 2 99 384
70 % 2 173 278
50 % 2 186 272
40 % 47 257 197
30 % 47 257 210
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 571
95 % 2 51 769
90 % 2 51 800
70 % 2 59 745
50 % 2 66 723
40 % 2 66 750
30 % 2 66 787
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 277
95 % 2 103 344
90 % 2 105 353
70 % 2 105 391
50 % 2 197 241
40 % 2 197 254
30 % 2 199 268
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 263
95 % 2 107 324
90 % 2 107 342
70 % 2 109 375
50 % 2 156 340
40 % 2 197 256
30 % 2 197 274
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 304
95 % 2 95 388
90 % 2 95 405
70 % 2 97 427
50 % 2 182 286
40 % 2 184 290
30 % 2 184 316
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 283
95 % 2 102 350
90 % 2 103 362
70 % 2 106 384
50 % 2 107 444
40 % 2 111 450
30 % 2 111 468
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 264
95 % 2 103 345
90 % 2 103 364
70 % 2 105 393
50 % 2 184 278
40 % 2 184 293
30 % 2 183 324
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 308
95 % 2 106 342
90 % 2 106 360
70 % 2 108 388
50 % 2 168 325
40 % 2 170 332
30 % 2 170 352
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 265
95 % 2 102 348
90 % 2 102 367
70 % 2 104 395
50 % 2 192 259
40 % 2 193 266
30 % 47 265 202
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 333
95 % 2 83 442
90 % 2 85 461
70 % 2 85 486
50 % 2 175 305
40 % 2 175 317
30 % 2 175 337
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1133
95 % 2 98 371
90 % 2 100 381
70 % 3 185 256
50 % 3 189 261
40 % 3 189 277
30 % 3 189 298
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 274
95 % 2 101 362
90 % 2 101 380
70 % 2 103 403
50 % 2 175 314
40 % 2 182 299
30 % 2 182 326
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 378
95 % 3 72 490
90 % 3 72 518
70 % 3 84 490
50 % 3 168 316
40 % 3 168 327
30 % 3 168 347
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 262
95 % 2 103 346
90 % 2 103 365
70 % 2 105 394
50 % 2 105 453
40 % 2 105 478
30 % 2 105 497
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 258
95 % 2 108 322
90 % 2 108 339
70 % 2 182 261
50 % 2 196 247
40 % 2 196 262
30 % 2 196 279
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 292
95 % 2 95 387
90 % 2 102 371
70 % 2 104 396
50 % 2 184 277
40 % 2 185 288
30 % 2 185 312
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 250
95 % 2 106 328
90 % 2 108 333
70 % 2 108 378
50 % 2 194 250
40 % 2 194 264
30 % 2 194 281
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 260
95 % 2 103 341
90 % 2 105 347
70 % 2 105 387
50 % 2 183 292
40 % 2 190 286
30 % 2 190 306
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 282
95 % 2 97 374
90 % 2 97 391
70 % 2 100 408
50 % 2 184 279
40 % 2 185 294
30 % 2 185 320
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 273
95 % 2 101 364
90 % 2 103 368
70 % 2 103 404
50 % 2 175 311
40 % 2 176 315
30 % 2 177 333
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 284
95 % 2 97 376
90 % 2 99 388
70 % 2 99 413
50 % 2 174 315
40 % 2 180 310
30 % 2 187 304
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 452
95 % 2 72 588
90 % 2 72 619
70 % 2 73 639
50 % 2 73 676
40 % 2 73 703
30 % 2 74 704
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 255
95 % 2 104 337
90 % 2 106 346
70 % 2 196 220
50 % 2 197 242
40 % 2 197 255
30 % 2 197 275
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 359
95 % 2 77 468
90 % 2 89 443
70 % 2 181 255
50 % 2 191 245
40 % 2 191 258
30 % 2 199 258
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 469
95 % 2 66 616
90 % 2 66 644
70 % 2 67 661
50 % 2 67 709
40 % 2 114 481
30 % 2 114 504
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 422
95 % 2 77 547
90 % 2 78 560
70 % 2 78 585
50 % 2 78 623
40 % 2 80 638
30 % 2 81 657
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 243
95 % 2 108 321
90 % 2 110 327
70 % 2 110 373
50 % 2 192 257
40 % 2 192 273
30 % 2 192 289
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 290
95 % 2 97 383
90 % 2 99 389
70 % 2 99 417
50 % 2 170 322
40 % 2 183 296
30 % 2 185 318
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 294
95 % 2 98 370
90 % 2 100 379
70 % 2 100 407
50 % 2 187 271
40 % 2 188 281
30 % 2 190 295
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 319
95 % 2 89 424
90 % 2 91 432
70 % 2 91 459
50 % 2 91 502
40 % 2 91 534
30 % 2 91 565
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 254
95 % 3 103 336
90 % 3 105 345
70 % 3 105 383
50 % 3 145 358
40 % 3 145 370
30 % 3 145 387
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 268
95 % 2 101 354
90 % 2 101 375
70 % 2 103 398
50 % 2 184 276
40 % 2 184 291
30 % 2 184 317
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 259
95 % 2 104 340
90 % 2 104 359
70 % 2 106 386
50 % 2 188 267
40 % 2 192 272
30 % 2 193 282
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 269
95 % 2 102 355
90 % 2 102 374
70 % 2 104 400
50 % 2 180 299
40 % 2 182 307
30 % 2 182 330
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 357
95 % 2 79 454
90 % 2 91 423
70 % 2 91 449
50 % 2 201 220
40 % 2 201 235
30 % 2 201 253
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 286
95 % 2 97 380
90 % 2 97 396
70 % 2 99 414
50 % 2 169 324
40 % 2 169 336
30 % 2 169 358
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 248
95 % 2 107 327
90 % 2 107 344
70 % 2 109 377
50 % 2 187 275
40 % 2 198 253
30 % 2 200 266
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 285
95 % 2 102 357
90 % 2 102 377
70 % 2 104 399
50 % 2 104 457
40 % 2 177 311
30 % 2 177 335
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 256
95 % 2 104 335
90 % 2 104 357
70 % 2 148 303
50 % 2 192 254
40 % 2 192 270
30 % 2 192 285
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 287
95 % 2 97 381
90 % 2 97 398
70 % 2 99 416
50 % 2 99 471
40 % 2 106 466
30 % 2 106 488
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 270
95 % 2 101 359
90 % 2 101 378
70 % 2 175 273
50 % 2 188 266
40 % 2 190 274
30 % 2 191 291
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 529
95 % 1 50 718
90 % 1 50 757
70 % 1 95 463
50 % 1 95 504
40 % 1 95 536
30 % 1 95 566
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 339
95 % 2 81 452
90 % 2 81 481
70 % 2 162 283
50 % 2 162 331
40 % 2 162 345
30 % 2 162 365
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 297
95 % 2 94 395
90 % 2 96 397
70 % 2 173 277
50 % 2 180 290
40 % 2 181 298
30 % 2 181 325
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 296
95 % 2 94 389
90 % 2 94 406
70 % 2 96 430
50 % 2 183 280
40 % 2 184 292
30 % 23 207 254
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 371
95 % 2 77 472
90 % 2 77 501
70 % 2 89 473
50 % 2 182 285
40 % 2 187 287
30 % 2 187 308
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 362
95 % 3 95 473
90 % 3 107 447
70 % 3 111 453
50 % 3 167 360
40 % 3 167 374
30 % 3 167 393
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54438
95 % 1 43 1511
90 % 2 47 1432
70 % 2 48 1428
50 % 2 69 1003
40 % 2 69 1030
30 % 2 69 1076
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 365
95 % 2 76 477
90 % 2 88 449
70 % 2 88 475
50 % 2 188 262
40 % 2 188 278
30 % 2 191 277

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures