4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 413
95 % 2 70 529
90 % 2 76 512
70 % 2 93 461
50 % 2 191 256
40 % 2 195 257
30 % 2 195 273
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 351
95 % 2 80 459
90 % 2 92 432
70 % 2 186 251
50 % 2 201 235
40 % 2 209 235
30 % 2 209 247
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1561
95 % 2 65 620
90 % 2 68 627
70 % 2 84 536
50 % 2 84 567
40 % 2 84 607
30 % 2 84 624
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 364
95 % 2 78 473
90 % 2 90 437
70 % 2 95 449
50 % 2 198 240
40 % 2 198 249
30 % 2 198 264
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1144
95 % 2 51 775
90 % 2 53 776
70 % 2 85 505
50 % 2 85 533
40 % 2 88 560
30 % 2 88 586
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 356
95 % 2 78 465
90 % 2 90 442
70 % 2 195 241
50 % 2 198 242
40 % 2 206 238
30 % 2 207 249
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 350
95 % 2 92 414
90 % 2 92 429
70 % 2 199 228
50 % 2 200 237
40 % 2 200 248
30 % 2 200 262
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 536
95 % 2 68 546
90 % 2 68 574
70 % 2 86 499
50 % 2 181 294
40 % 2 189 287
30 % 2 189 304
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 353
95 % 2 91 416
90 % 2 92 430
70 % 2 92 462
50 % 2 192 250
40 % 2 200 247
30 % 2 201 261
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 420
95 % 2 70 531
90 % 2 82 492
70 % 2 82 519
50 % 2 178 295
40 % 2 178 306
30 % 2 178 330
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 610
95 % 2 51 787
90 % 2 51 824
70 % 2 59 771
50 % 2 68 712
40 % 2 133 405
30 % 2 133 418
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 376
95 % 2 76 477
90 % 2 88 453
70 % 2 185 252
50 % 2 194 246
40 % 2 204 241
30 % 2 204 252
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 382
95 % 2 74 495
90 % 2 74 521
70 % 2 86 496
50 % 2 176 304
40 % 2 176 316
30 % 2 180 314
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 384
95 % 2 74 490
90 % 2 74 516
70 % 2 86 491
50 % 2 86 525
40 % 2 88 539
30 % 2 88 566
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 389
95 % 2 73 501
90 % 2 85 473
70 % 2 85 501
50 % 2 172 315
40 % 2 172 328
30 % 2 172 346
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 359
95 % 2 94 412
90 % 2 94 428
70 % 2 202 231
50 % 3 213 221
40 % 3 213 231
30 % 38 809 22
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 369
95 % 2 90 419
90 % 2 90 436
70 % 2 205 222
50 % 2 215 217
40 % 2 215 228
30 % 2 215 237
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 368
95 % 2 78 476
90 % 2 90 447
70 % 2 90 474
50 % 2 193 263
40 % 2 193 277
30 % 2 193 291
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 597
95 % 2 50 796
90 % 2 50 832
70 % 2 58 772
50 % 2 58 803
40 % 2 58 839
30 % 2 60 865
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 570
95 % 1 47 762
90 % 1 51 765
70 % 1 51 788
50 % 1 86 545
40 % 1 86 585
30 % 1 86 606
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 378
95 % 2 87 437
90 % 2 87 461
70 % 2 176 269
50 % 2 188 264
40 % 2 188 278
30 % 2 188 292
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 390
95 % 2 74 499
90 % 2 84 480
70 % 2 91 471
50 % 2 97 472
40 % 2 162 337
30 % 2 162 356
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 644
95 % 2 90 425
90 % 2 90 446
70 % 2 193 246
50 % 2 204 228
40 % 2 205 239
30 % 2 205 251
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 388
95 % 2 72 505
90 % 2 73 527
70 % 2 171 279
50 % 2 179 298
40 % 2 179 311
30 % 2 179 332
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 374
95 % 2 95 482
90 % 2 107 458
70 % 2 107 485
50 % 2 172 357
40 % 2 172 371
30 % 2 172 387
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 777
95 % 1 43 964
90 % 1 43 990
70 % 1 80 613
50 % 1 84 610
40 % 1 84 655
30 % 1 84 672
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 400
95 % 3 77 452
90 % 3 77 481
70 % 3 77 509
50 % 5 178 276
40 % 5 184 266
30 % 5 185 278
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1060
95 % 1 27 1380
90 % 1 27 1426
70 % 3 33 1241
50 % 3 33 1288
40 % 3 33 1323
30 % 3 33 1364
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 295
95 % 2 97 388
90 % 2 99 396
70 % 2 174 280
50 % 2 187 277
40 % 47 258 200
30 % 47 258 212
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 587
95 % 2 51 793
90 % 2 51 828
70 % 2 59 770
50 % 2 66 738
40 % 2 66 771
30 % 2 66 813
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 289
95 % 2 103 354
90 % 2 105 361
70 % 2 105 400
50 % 2 198 251
40 % 2 198 261
30 % 2 200 271
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 266
95 % 2 107 331
90 % 2 107 350
70 % 2 109 385
50 % 2 157 344
40 % 2 198 263
30 % 2 198 279
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 317
95 % 2 95 401
90 % 2 95 420
70 % 2 97 439
50 % 2 183 290
40 % 2 185 293
30 % 2 185 315
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 293
95 % 2 102 358
90 % 2 103 370
70 % 2 106 393
50 % 2 107 447
40 % 2 111 459
30 % 2 111 477
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 270
95 % 2 103 350
90 % 2 103 371
70 % 2 105 398
50 % 2 185 281
40 % 2 185 298
30 % 2 184 323
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 321
95 % 2 106 356
90 % 2 106 375
70 % 2 108 401
50 % 2 169 327
40 % 2 171 335
30 % 2 171 354
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 271
95 % 2 102 359
90 % 2 102 377
70 % 2 104 405
50 % 2 193 272
40 % 2 195 274
30 % 47 266 205
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 345
95 % 2 83 449
90 % 2 85 471
70 % 2 85 498
50 % 2 176 309
40 % 2 176 322
30 % 2 176 339
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1147
95 % 2 98 387
90 % 2 100 394
70 % 3 186 259
50 % 3 190 271
40 % 3 190 284
30 % 3 190 300
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 282
95 % 2 101 373
90 % 2 101 393
70 % 2 103 414
50 % 2 103 465
40 % 2 183 305
30 % 2 183 328
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 386
95 % 3 72 503
90 % 3 72 533
70 % 3 84 502
50 % 3 170 317
40 % 3 170 330
30 % 3 170 349
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 269
95 % 2 103 357
90 % 2 103 376
70 % 2 105 404
50 % 2 105 459
40 % 2 105 487
30 % 2 105 505
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 262
95 % 2 108 330
90 % 2 108 348
70 % 2 183 266
50 % 2 197 254
40 % 2 197 268
30 % 2 197 283
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 307
95 % 2 95 403
90 % 2 102 380
70 % 2 104 407
50 % 2 105 458
40 % 2 106 484
30 % 2 106 502
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 257
95 % 2 106 334
90 % 2 108 342
70 % 2 108 389
50 % 2 195 259
40 % 2 195 272
30 % 2 195 288
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 268
95 % 2 103 355
90 % 2 105 363
70 % 2 105 403
50 % 2 186 287
40 % 2 191 289
30 % 2 191 311
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 297
95 % 2 97 391
90 % 2 97 408
70 % 2 100 421
50 % 2 185 285
40 % 2 186 296
30 % 2 186 320
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 283
95 % 2 101 377
90 % 2 103 383
70 % 2 103 416
50 % 2 176 318
40 % 2 177 324
30 % 2 178 337
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 294
95 % 2 97 390
90 % 2 99 400
70 % 2 99 428
50 % 2 175 316
40 % 2 181 317
30 % 2 188 309
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 464
95 % 2 72 606
90 % 2 72 635
70 % 2 73 657
50 % 2 73 685
40 % 2 73 723
30 % 2 74 722
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 265
95 % 2 104 348
90 % 2 106 353
70 % 2 197 240
50 % 2 198 252
40 % 2 198 262
30 % 2 198 277
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 371
95 % 2 77 478
90 % 2 89 456
70 % 2 182 262
50 % 2 192 253
40 % 2 192 265
30 % 2 200 263
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 483
95 % 2 66 629
90 % 2 66 660
70 % 2 67 678
50 % 2 67 716
40 % 2 114 491
30 % 2 114 512
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 434
95 % 2 77 560
90 % 2 78 581
70 % 2 78 601
50 % 2 78 635
40 % 2 80 660
30 % 2 81 671
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 250
95 % 2 108 322
90 % 2 110 334
70 % 2 110 382
50 % 2 193 265
40 % 2 193 279
30 % 2 193 293
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 304
95 % 2 97 396
90 % 2 99 404
70 % 2 99 436
50 % 2 171 325
40 % 2 184 299
30 % 2 186 316
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 309
95 % 2 98 383
90 % 2 100 391
70 % 2 100 420
50 % 2 188 275
40 % 2 189 288
30 % 2 191 299
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 330
95 % 2 89 434
90 % 2 91 444
70 % 2 91 472
50 % 2 91 508
40 % 2 91 548
30 % 2 91 576
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 263
95 % 3 103 346
90 % 3 105 352
70 % 3 105 395
50 % 3 146 361
40 % 3 146 375
30 % 3 146 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 275
95 % 2 101 369
90 % 2 101 388
70 % 2 103 410
50 % 2 185 282
40 % 2 185 295
30 % 2 185 319
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 264
95 % 2 104 347
90 % 2 104 368
70 % 2 106 396
50 % 2 189 274
40 % 2 193 280
30 % 2 194 290
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 274
95 % 2 102 366
90 % 2 102 384
70 % 2 104 411
50 % 2 181 307
40 % 2 183 313
30 % 2 183 334
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 357
95 % 2 79 463
90 % 2 91 433
70 % 2 91 463
50 % 2 203 229
40 % 2 203 242
30 % 2 203 256
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 300
95 % 2 97 393
90 % 2 97 410
70 % 2 99 430
50 % 2 170 326
40 % 2 170 338
30 % 2 170 358
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 253
95 % 2 107 328
90 % 2 107 346
70 % 2 109 384
50 % 2 188 280
40 % 2 199 259
30 % 2 201 270
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 299
95 % 2 102 370
90 % 2 102 389
70 % 2 104 413
50 % 2 104 463
40 % 2 178 320
30 % 2 188 312
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 261
95 % 2 104 345
90 % 2 104 366
70 % 2 148 309
50 % 2 193 266
40 % 2 193 282
30 % 2 193 295
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 305
95 % 2 97 399
90 % 2 97 416
70 % 2 99 438
50 % 2 99 486
40 % 2 106 474
30 % 2 106 495
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 277
95 % 2 101 368
90 % 2 101 386
70 % 2 177 275
50 % 2 189 273
40 % 2 191 283
30 % 2 192 297
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 553
95 % 1 50 737
90 % 1 50 775
70 % 1 96 469
50 % 1 96 506
40 % 1 96 543
30 % 1 96 571
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 348
95 % 2 81 461
90 % 2 81 491
70 % 2 164 284
50 % 2 164 329
40 % 2 164 341
30 % 2 164 361
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 308
95 % 2 94 407
90 % 2 96 411
70 % 2 169 282
50 % 2 181 299
40 % 2 181 308
30 % 2 182 329
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 310
95 % 2 94 405
90 % 2 94 423
70 % 2 96 443
50 % 2 184 283
40 % 2 185 294
30 % 23 208 258
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 377
95 % 2 77 486
90 % 2 77 510
70 % 2 89 488
50 % 2 183 288
40 % 2 188 290
30 % 2 188 310
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 374
95 % 3 95 482
90 % 3 107 458
70 % 3 107 485
50 % 3 172 357
40 % 3 172 371
30 % 3 172 387
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54536
95 % 1 43 1537
90 % 2 47 1440
70 % 2 48 1446
50 % 2 69 1018
40 % 2 69 1038
30 % 2 69 1091
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 375
95 % 2 76 483
90 % 2 88 457
70 % 2 88 484
50 % 2 189 269
40 % 2 189 286
30 % 2 192 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 11 AJ, CJ 40S ribosomal protein S9-A 4932
2 4U4R 11 S9, s9 40S ribosomal protein S9-A 4932
3 4U3U 11 S9, s9 40S ribosomal protein S9-A 4932
4 5TBW 58 K, s9 40S ribosomal protein S9-A 4932
5 4U3M 11 S9, s9 40S ribosomal protein S9-A 4932
6 4U3N 11 S9, s9 40S ribosomal protein S9-A 4932
7 4U52 11 S9, s9 40S ribosomal protein S9-A 4932
8 4U4Q 11 S9, s9 40S ribosomal protein S9-A 4932
9 4U6F 11 S9, s9 40S ribosomal protein S9-A 4932
10 4U4U 11 S9, s9 40S ribosomal protein S9-A 4932
11 4U4Z 11 S9, s9 40S ribosomal protein S9-A 4932
12 4U4Y 11 S9, s9 40S ribosomal protein S9-A 4932
13 4U4N 11 S9, s9 40S ribosomal protein S9-A 4932
14 4U55 11 S9, s9 40S ribosomal protein S9-A 4932
15 5DAT 11 S9, s9 40S ribosomal protein S9-A 4932
16 5I4L 11 S9, s9 40S ribosomal protein S9-A 4932
17 4U51 11 S9, s9 40S ribosomal protein S9-A 4932
18 6HHQ 57 K, s9 40S ribosomal protein S9-A 4932
19 5OBM 55 S9, s9 40S ribosomal protein S9-A 4932
20 4U53 11 S9, s9 40S ribosomal protein S9-A 4932
21 5ON6 59 K, s9 40S ribosomal protein S9-A 4932
22 4U50 11 S9, s9 40S ribosomal protein S9-A 4932
23 5NDV 55 S9, s9 40S ribosomal protein S9-A 4932
24 5LYB 11 S9, s9 40S ribosomal protein S9-A 4932
25 4U56 11 S9, s9 40S ribosomal protein S9-A 4932
26 5TGA 11 S9, s9 40S ribosomal protein S9-A 4932
27 5MEI 58 K, s9 40S ribosomal protein S9-A 4932
28 5FCJ 11 S9, s9 40S ribosomal protein S9-A 4932
29 4U4O 11 S9, s9 40S ribosomal protein S9-A 4932
30 5DGV 11 S9, s9 40S ribosomal protein S9-A 4932
31 5DGE 11 S9, s9 40S ribosomal protein S9-A 4932
32 5NDW 77 S9, s9 40S ribosomal protein S9-A 4932
33 4BTS 14 AD, BD, CD, DD 40S RIBOSOMAL PROTEIN RPS9E 5911
34 5NDG 11 S9, s9 40S ribosomal protein S9-A 4932
35 5FCI 11 S9, s9 40S ribosomal protein S9-A 4932
36 5DC3 11 S9, s9 40S ribosomal protein S9-A 4932
37 5DGF 11 S9, s9 40S ribosomal protein S9-A 4932
38 4V5O 13 AD, BD RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN 5911
39 5TGM 11 S9, s9 40S ribosomal protein S9-A 4932
40 4V7R 6 AE, CE 40S ribosomal protein S9-A 4932
41 5VYC 12 J1, J2, J3, J4, J5, J6 40S ribosomal protein S9 9606
42 4KZZ 10 J 40S Ribosomal Protein S9 9986
43 4KZX 10 J 40S Ribosomal protein S9 9986
44 4KZY 10 J 40S Ribosomal Protein S9 9986
45 6ZOJ 11 J 40S ribosomal protein S9 9606
46 6YAL 12 L 40S ribosomal protein uS4 9986
47 6YAM 12 L 40S ribosomal protein uS4 9986
48 6YAN 11 L Ribosomal protein S9 (Predicted) 9986
49 6W2S 10 K uS4 9986
50 6W2T 9 K uS4 9986
51 6Y7C 10 J 40S ribosomal protein S9-A 4932
52 6Y57 59 SJ 40S ribosomal protein S9 9606
53 6Y2L 59 SJ 40S ribosomal protein S9 9606
54 6Y0G 59 SJ 40S ribosomal protein S9 9606
55 6TNU 13 W 40S ribosomal protein S9-A 4932
56 6TMF 5 E 30S ribosomal protein S4 2264
57 6UZ7 57 J KLLA0E23673p 28985
58 6TB3 13 W 40S ribosomal protein S9-A 4932
59 6T83 12 Jb, k 40S ribosomal protein S9-A 4932
60 6T7T 14 SJ 40S ribosomal protein S9-A 4932
61 6T7I 12 SJ 40S ribosomal protein S9-A 4932
62 6T4Q 11 SJ 40S ribosomal protein S9-A 4932
63 6SW9 5 D 30S ribosomal protein S4 29292
64 6SWC 5 D 30S ribosomal protein S4 29292
65 6SWD 5 D 30S ribosomal protein S4 29292
66 6SV4 28 W, Wb, Wc 40S ribosomal protein S9-A 4932
67 6SNT 12 J 40S ribosomal protein S9-A 4932
68 6SGC 11 K1 Ribosomal protein S9 (Predicted) 9986
69 6S47 55 BK 40S ribosomal protein S9-A 4932
70 6RXT 37 Cg 40S ribosomal protein s9-like protein 209285
71 6RXU 40 Cg 40S ribosomal protein s9-like protein 209285
72 6RXV 40 Cg 40S ribosomal protein s9-like protein 209285
73 6RXX 22 Cg 40S ribosomal protein s9-like protein 209285
74 6RXY 36 Cg 40S ribosomal protein s9-like protein 209285
75 6RXZ 39 Cg 40S ribosomal protein s9-like protein 209285
76 6P5I 11 K uS4 9986
77 6P5J 11 K uS4 9986
78 6P5K 57 K uS4 9986
79 6P5N 57 K uS4 9986
80 6P4G 11 K uS4 9986
81 6P4H 12 K uS4 9986
82 6OM7 25 SJ 40S ribosomal protein S9 9606
83 6OLZ 56 BJ 40S ribosomal protein S9 9606
84 6OM0 25 SJ 40S ribosomal protein S9 9606
85 6OLE 25 SJ 40S ribosomal protein S9 9606
86 6OLF 25 SJ 40S ribosomal protein S9 9606
87 6OLG 59 BJ 40S ribosomal protein S9 9606
88 6OLI 25 SJ 40S ribosomal protein S9 9606
89 6OKK 5 E 40S ribosomal protein S9 5833
90 6RBD 11 J 40S ribosomal protein S9-A 4932
91 6RBE 9 J 40S ribosomal protein S9-A 4932
92 6R7Q 4 DD Ribosomal protein S9 (Predicted) 9986
93 6R6G 17 DD Ribosomal protein S9 (Predicted) 9986
94 6R6P 59 XX Ribosomal protein S9 (Predicted) 9986
95 6R5Q 61 DD Ribosomal protein S9 (Predicted) 9986
96 6QZP 72 SJ 40S ribosomal protein S9 9606
97 6Q8Y 78 W 40S ribosomal protein S9-A 4932
98 6I7O 28 W, Wb 40S ribosomal protein S9-A 4932
99 6IP5 71 3I 40S ribosomal protein S9 9606
100 6IP6 70 3I 40S ribosomal protein S9 9606
101 6IP8 70 3I 40S ribosomal protein S9 9606
102 6MTB 60 JJ 40S ribosomal protein S9 9986
103 6MTC 59 JJ 40S ribosomal protein S9 9986
104 6MTD 61 JJ uS4 9986
105 6MTE 60 JJ uS4 9986
106 6HCQ 14 K2 Ribosomal protein S9 (Predicted) 9986
107 6HCJ 14 K2 Ribosomal protein S9 (Predicted) 9986
108 6HCM 11 K1 Ribosomal protein S9 (Predicted) 9986
109 6HCF 11 K1 Ribosomal protein S9 (Predicted) 9986
110 6GZ3 28 BJ Ribosomal protein S9 (Predicted) 9986
111 6GZ4 31 BJ ribosomal protein uS4 9986
112 6GZ5 28 BJ ribosomal protein uS4 9986
113 6GSM 13 J KLLA0E23673p 28985
114 6GSN 35 J KLLA0E23673p 28985
115 6GQV 57 z 40S ribosomal protein S9-A 4932
116 6GQ1 57 z 40S ribosomal protein S9-A 4932
117 6GQB 57 z 40S ribosomal protein S9-A 4932
118 6D9J 59 KK uS4 9986
119 6D90 60 KK uS4 9986
120 6G5H 9 J 40S ribosomal protein S9 9606
121 6G5I 11 J 40S ribosomal protein S9 9606
122 6G4S 30 J 40S ribosomal protein S9 9606
123 6G4W 26 J 40S ribosomal protein S9 9606
124 6G51 10 J 40S ribosomal protein S9 9606
125 6G53 10 J 40S ribosomal protein S9 9606
126 6G18 20 J 40S ribosomal protein S9 9606
127 6FYX 13 J KLLA0E23673p 28985
128 6FYY 13 J KLLA0E23673p 28985
129 6FEC 16 K 40S ribosomal protein S9 9606
130 6FAI 21 J 40S ribosomal protein S9-A 4932
131 6EML 19 W 40S ribosomal protein S9-A 4932
132 6EK0 72 SJ 40S ribosomal protein S9 9606
133 6AZ1 4 D ribosomal protein S4 5661
134 5OQL 40 r 40S ribosomal protein s9-like protein 209285
135 5OPT 19 b 40S ribosomal protein S9, putative 5693
136 5WLC 10 L9 rpS9_uS4 4932
137 5XYI 11 J Uncharacterized protein 5722
138 5XXU 11 J Ribosomal protein uS4 5811
139 5OA3 14 J 40S ribosomal protein S9 9606
140 5WYJ 41 SK 40S ribosomal protein S9-A 4932
141 5WYK 38 SK 40S ribosomal protein S9-A 4932
142 5TZS 9 9 rpS9_uS4 4932
143 5MC6 24 W 40S ribosomal protein S9-A 4932
144 5M1J 17 J2 40S ribosomal protein S9-A 4932
145 5LZS 60 JJ Ribosomal protein S9 (Predicted) 9986
146 5LZT 61 JJ uS4 9986
147 5LZU 60 JJ Ribosomal protein S9 (Predicted) 9986
148 5LZV 61 JJ uS4 9986
149 5LZW 61 JJ uS4 9986
150 5LZX 61 JJ Ribosomal protein S9 (Predicted) 9986
151 5LZY 59 JJ Ribosomal protein S9 (Predicted) 9986
152 5LZZ 61 JJ Ribosomal protein S9 (Predicted) 9986
153 5T2A 56 6 uS4 5661
154 5T2C 55 AL 40S ribosomal protein S9 9606
155 5LL6 9 W 40S ribosomal protein S9-A 4932
156 5LKS 71 SJ 40S ribosomal protein S9 9606
157 5K0Y 9 K Ribosomal protein S9 (Predicted) 9986
158 5JUO 59 GB uS4 (yeast S9) 4932
159 5JUP 59 GB uS4 (yeast S9) 4932
160 5JUS 59 GB uS4 (yeast S9) 4932
161 5JUT 59 GB uS4 (yeast S9) 4932
162 5JUU 59 GB uS4 (yeast S9) 4932
163 5JPQ 27 u uS4 209285
164 5JB3 11 D 30S ribosomal protein S4 30S ribosomal protein uS4 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
165 5JBH 22 D 30S ribosomal protein uS4 30S ribosomal protein uS4 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
166 5IT7 57 J KLLA0E23673p 28985
167 5IT9 10 J Ribosomal protein uS4 28985
168 5FLX 11 J 40S RIBOSOMAL PROTEIN S9 9986
169 3JBN 4 E 40S ribosomal protein uS4 5833
170 3JBO 9 E 40S ribosomal protein uS4 5833
171 3JBP 4 E 40S ribosomal protein uS4 5833
172 3JAP 13 J uS4 28985
173 3JAQ 13 J uS4 28985
174 3JAM 11 J uS4 28985
175 3JAN 61 SJ Ribosomal protein uS4 SEE REMARK 999 9986
176 3JAJ 62 SJ Ribosomal protein uS4 SEE REMARK 999 9986
177 3JAG 61 JJ uS4 9986
178 3JAH 61 JJ uS4 9986
179 3JAI 61 JJ uS4 9986
180 5A2Q 12 J RIBOSOMAL PROTEIN US4 9606
181 4UG0 73 SJ 40S RIBOSOMAL PROTEIN S9 9606
182 5AJ0 59 BJ 40S ribosomal protein S9 9606
183 4UER 14 D US4 4934
184 4D61 11 J 40S RIBOSOMAL PROTEIN S9 9986
185 4D5L 11 J 40S RIBOSOMAL PROTEIN US4 9986
186 4V3P 25 SC 40S ribosomal protein S9 4565
187 3J81 11 J uS4 28985
188 3J80 9 J uS4 28985
189 3J7P 59 SJ Ribosomal protein uS4 9823
190 3J7R 60 SJ Ribosomal protein uS4 9823
191 4UJC 60 CJ 40S RIBOSOMAL PROTEIN US4 9986
192 4UJD 60 CJ 40S RIBOSOMAL PROTEIN US4 9986
193 3J7A 5 E 40S ribosomal protein uS4 5833
194 3J77 55 S9 40S ribosomal protein S9 4932
195 3J78 55 S9 40S ribosomal protein S9 4932
196 3J6X 56 S9 40S ribosomal protein S9 4932
197 3J6Y 56 S9 40S ribosomal protein S9 4932
198 4UJE 14 BJ 40S RIBOSOMAL PROTEIN S9 9986
199 4V92 12 BJ US4 28985
200 4V7E 33 BJ 40S ribosomal protein S4 4565
201 4V8Y 18 AJ 40S RIBOSOMAL PROTEIN S9-A 4932
202 4V8Z 18 AJ 40S RIBOSOMAL PROTEIN S9-A 4932
203 4V4N 16 BD 30S ribosomal protein S4P SEE REMARK 999 2190
204 4V6W 26 AJ 40S ribosomal protein S9 7227
205 4V6X 26 AJ 40S ribosomal protein S9 9606
206 4V8M 7 A6 40S RIBOSOMAL PROTEIN S9, PUTATIVE 185431
207 4V6U 10 AD 30S ribosomal protein S4P 2261
208 4V6I 5 AC 40S ribosomal protein rpS9 (S4p) 4932
209 4V4B 5 AD 40S ribosomal protein S9-A 4932