4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 238 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 90 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 110 384
70 % 2 115 396
50 % 2 234 232
40 % 2 234 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 110 383
70 % 2 232 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 112 351
90 % 2 112 371
70 % 2 236 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 112 352
90 % 2 113 365
70 % 2 113 412
50 % 2 228 234
40 % 2 239 227
30 % 2 240 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 202 276
40 % 2 202 283
30 % 2 202 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 102 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 204 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 80 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 114 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 111 378
70 % 2 242 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 115 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 64 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 49 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 106 388
90 % 2 106 411
70 % 2 212 244
50 % 2 224 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 355
95 % 2 93 444
90 % 2 103 426
70 % 2 110 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 111 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 192 266
50 % 2 200 286
40 % 2 200 295
30 % 2 200 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 111 487
50 % 2 191 337
40 % 2 191 351
30 % 2 191 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 199 268
40 % 5 205 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 208 267
40 % 47 282 196
30 % 47 282 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 55 595
95 % 2 55 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 113 345
90 % 2 115 352
70 % 2 115 395
50 % 2 220 251
40 % 2 220 253
30 % 2 222 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 273
95 % 2 117 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 220 254
30 % 2 220 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 203 283
40 % 2 205 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 121 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 113 363
70 % 2 115 394
50 % 2 207 273
40 % 2 207 279
30 % 2 206 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 112 348
90 % 2 112 368
70 % 2 114 403
50 % 2 215 263
40 % 2 216 260
30 % 2 218 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 90 488
50 % 2 190 304
40 % 2 190 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 106 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 210 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 286
95 % 2 111 366
90 % 2 111 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 205 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 276
95 % 2 113 342
90 % 2 113 364
70 % 2 115 398
50 % 2 115 453
40 % 2 115 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 118 325
90 % 2 118 345
70 % 2 205 255
50 % 2 219 253
40 % 2 219 255
30 % 2 219 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 112 369
70 % 2 114 402
50 % 2 207 270
40 % 2 208 275
30 % 2 208 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 116 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 217 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 274
95 % 2 113 346
90 % 2 115 355
70 % 2 115 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 107 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 208 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 113 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 200 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 203 301
30 % 2 210 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 109 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 244 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 89 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 118 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 215 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 298
95 % 2 107 383
90 % 2 109 398
70 % 2 109 431
50 % 2 193 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 210 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 96 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 113 267
95 % 3 113 337
90 % 3 115 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 280
95 % 2 111 353
90 % 2 111 375
70 % 2 113 409
50 % 2 207 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 116 389
50 % 2 211 264
40 % 2 215 261
30 % 2 216 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 283
95 % 2 112 360
90 % 2 112 381
70 % 2 114 411
50 % 2 203 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 239 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 109 433
50 % 2 192 307
40 % 2 192 318
30 % 2 192 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 295
95 % 2 112 358
90 % 2 112 373
70 % 2 114 407
50 % 2 114 461
40 % 2 200 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 114 336
90 % 2 114 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 297
95 % 2 107 381
90 % 2 107 408
70 % 2 109 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 216 255
40 % 2 216 259
30 % 2 217 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 97 484
50 % 1 97 524
40 % 1 97 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 99 417
90 % 2 101 431
70 % 2 194 269
50 % 2 201 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 97 436
90 % 2 97 454
70 % 2 109 435
50 % 2 219 252
40 % 2 224 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 111 487
50 % 3 191 337
40 % 3 191 351
30 % 3 191 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 340
95 % 2 96 437
90 % 2 108 406
70 % 2 108 436
50 % 2 226 243
40 % 2 226 245
30 % 2 229 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 15 AN, CN 40S ribosomal protein S13 4932
2 4U4R 15 C3, c3 40S ribosomal protein S13 4932
3 4U3U 15 C3, c3 40S ribosomal protein S13 4932
4 5TBW 62 O, c3 40S ribosomal protein S13 4932
5 4U3M 15 C3, c3 40S ribosomal protein S13 4932
6 4U3N 15 C3, c3 40S ribosomal protein S13 4932
7 4U52 15 C3, c3 40S ribosomal protein S13 4932
8 4U4Q 15 C3, c3 40S ribosomal protein S13 4932
9 4U6F 15 C3, c3 40S ribosomal protein S13 4932
10 4U4U 15 C3, c3 40S ribosomal protein S13 4932
11 4U4Z 15 C3, c3 40S ribosomal protein S13 4932
12 4U4Y 15 C3, c3 40S ribosomal protein S13 4932
13 4U4N 15 C3, c3 40S ribosomal protein S13 4932
14 4U55 15 C3, c3 40S ribosomal protein S13 4932
15 5DAT 15 C3, c3 40S ribosomal protein S13 4932
16 5I4L 15 C3, c3 40S ribosomal protein S13 4932
17 4U51 15 C3, c3 40S ribosomal protein S13 4932
18 6HHQ 61 O, c3 40S ribosomal protein S13 4932
19 5OBM 59 C3, c3 40S ribosomal protein S13 4932
20 4U53 15 C3, c3 40S ribosomal protein S13 4932
21 5ON6 63 O, c3 40S ribosomal protein S13 4932
22 4U50 15 C3, c3 40S ribosomal protein S13 4932
23 5NDV 59 C3, c3 40S ribosomal protein S13 4932
24 5LYB 15 C3, c3 40S ribosomal protein S13 4932
25 4U56 15 C3, c3 40S ribosomal protein S13 4932
26 5TGA 15 C3, c3 40S ribosomal protein S13 4932
27 5MEI 62 O, c3 40S ribosomal protein S13 4932
28 5FCJ 15 C3, c3 40S ribosomal protein S13 4932
29 4U4O 15 C3, c3 40S ribosomal protein S13 4932
30 5DGV 15 C3, c3 40S ribosomal protein S13 4932
31 5DGE 15 C3, c3 40S ribosomal protein S13 4932
32 5NDW 8 C3, c3 40S ribosomal protein S13 4932
33 4BTS 25 AO, BO, CO, DO 40S RIBOSOMAL PROTEIN RPS13E 5911
34 5NDG 15 C3, c3 40S ribosomal protein S13 4932
35 5FCI 15 C3, c3 40S ribosomal protein S13 4932
36 5DC3 15 C3, c3 40S ribosomal protein S13 4932
37 5DGF 15 C3, c3 40S ribosomal protein S13 4932
38 4V5O 24 AO, BO RPS13E 5911
39 5TGM 15 C3, c3 40S ribosomal protein S13 4932
40 4V7R 8 AG, CG 40S ribosomal protein S13 4932
41 5VYC 14 N1, N2, N3, N4, N5, N6 40S ribosomal protein S13 9606
42 4KZZ 14 N 40S Ribosomal Protein S13 9986
43 4KZX 14 N 40S ribosomal protein S13 9986
44 4KZY 14 N 40S Ribosomal Protein S13 9986
45 6ZVH 27 N 40S ribosomal protein S13 9606
46 6ZVI 18 v 40S ribosomal protein S13 4932
47 6ZQA 47 DN 40S ribosomal protein S13 4932
48 6ZQB 56 DN 40S ribosomal protein S13 4932
49 6ZQC 56 DN 40S ribosomal protein S13 4932
50 6ZQD 52 DN 40S ribosomal protein S13 4932
51 6ZQE 48 DN 40S ribosomal protein S13 4932
52 6ZQF 34 DN 40S ribosomal protein S13 4932
53 6ZQG 26 DN 40S ribosomal protein S13 4932
54 6ZP4 12 m 40S ribosomal protein S13 9606
55 6ZOJ 15 N 40S ribosomal protein S13 9606
56 6ZOK 11 N 40S ribosomal protein S13 9606
57 6ZON 12 m 40S ribosomal protein S13 9606
58 6ZN5 13 N 40S ribosomal protein S13 9606
59 6ZMW 18 I 40S ribosomal protein S13 9606
60 6ZMO 75 SN 40S ribosomal protein S13 9606
61 6ZMT 13 N 40S ribosomal protein S13 9606
62 6ZME 75 SN 40S ribosomal protein S13 9606
63 6ZMI 75 SN 40S ribosomal protein S13 9606
64 6ZLW 13 N 40S ribosomal protein S13 9606
65 6ZM7 75 SN 40S ribosomal protein S13 9606
66 6XIQ 60 AD 40S ribosomal protein S13 4932
67 6XIR 57 AD 40S ribosomal protein S13 4932
68 6Z6J 19 SN 40S ribosomal protein S13 4932
69 6Z6K 19 SN 40S ribosomal protein S13 4932
70 6Z6L 73 SN 40S ribosomal protein S13 9606
71 6Z6M 73 SN 40S ribosomal protein S13 9606
72 6Z6N 73 SN 40S ribosomal protein S13 9606
73 6WOO 61 NN uS15 4932
74 6YBW 21 I 40S ribosomal protein S13 9606
75 6YBD 16 I 40S ribosomal protein S13 9606
76 6YAL 16 P 40S ribosomal protein uS15 9986
77 6YAM 16 P ribosomal protein uS15 9986
78 6YAN 15 P ribosomal protein uS15 9986
79 6W2S 12 O uS15 9986
80 6W2T 11 O uS15 9986
81 6Y7C 13 N 40S ribosomal protein S13 4932
82 6Y57 62 SN 40S ribosomal protein S13 9606
83 6Y2L 62 SN 40S ribosomal protein S13 9606
84 6Y0G 63 SN 40S ribosomal protein S13 9606
85 6LQP 13 SO 40S ribosomal protein S13 4932
86 6LQQ 12 SO 40S ribosomal protein S13 4932
87 6LQR 12 SO 40S ribosomal protein S13 4932
88 6LQS 12 SO 40S ribosomal protein S13 4932
89 6LQT 12 SO 40S ribosomal protein S13 4932
90 6LQU 12 SO 40S ribosomal protein S13 4932
91 6TNU 17 Y 40S ribosomal protein S13 4932
92 6TMF 18 R 30S ribosomal protein S15 2264
93 6TH6 17 Aq 30S ribosomal protein S15 311400
94 6UZ7 61 N KLLA0F18040p 28985
95 6TB3 17 Y 40S ribosomal protein S13 4932
96 6T83 16 Nb, o 40S ribosomal protein S13 4932
97 6T7T 18 SN 40S ribosomal protein S13 4932
98 6T7I 16 SN 40S ribosomal protein S13 4932
99 6T4Q 15 SN 40S ribosomal protein S13 4932
100 6SW9 18 Q 30S ribosomal protein S15 29292
101 6SWC 18 Q 30S ribosomal protein S15 29292
102 6SWD 13 Q 30S ribosomal protein S15 29292
103 6SV4 32 Y, Yb, Yc 40S ribosomal protein S13 4932
104 6SNT 16 N 40S ribosomal protein S13 4932
105 6SKF 17 Aq 30S ribosomal protein S15 311400
106 6SKG 17 Aq 30S ribosomal protein S15 311400
107 6SGC 15 O1 Ribosomal_S13_N domain-containing protein 9986
108 6KE6 13 SO 40S ribosomal protein S13 4932
109 6S47 59 BO 40S ribosomal protein S13 4932
110 6RXT 38 Ch 40S ribosomal protein S13-like protein 209285
111 6RXU 41 Ch 40S ribosomal protein S13-like protein 209285
112 6RXV 41 Ch 40S ribosomal protein S13-like protein 209285
113 6RXX 23 Ch 40S ribosomal protein S13-like protein 209285
114 6RXY 37 Ch 40S ribosomal protein S13-like protein 209285
115 6RXZ 40 Ch 40S ribosomal protein S13-like protein 209285
116 6P5I 15 O uS15 9986
117 6P5J 15 O uS15 9986
118 6P5K 61 O uS15 9986
119 6P5N 61 O uS15 9986
120 6P4G 15 O uS15 9986
121 6P4H 16 O uS15 9986
122 6RM3 47 SN0 uS15 6039
123 6OM7 27 SN 40S ribosomal protein S13 9606
124 6OLZ 60 BN 40S ribosomal protein S13 9606
125 6OM0 27 SN 40S ribosomal protein S13 9606
126 6OLE 27 SN 40S ribosomal protein S13 9606
127 6OLF 27 SN 40S ribosomal protein S13 9606
128 6OLG 63 BN 40S ribosomal protein S13 9606
129 6OLI 27 SN 40S ribosomal protein S13 9606
130 6OKK 21 U 40S ribosomal protein S15 5833
131 6RBD 13 N 40S ribosomal protein S13 4932
132 6RBE 11 N 40S ribosomal protein S13 4932
133 6R7Q 27 QQ ribosomal protein uS15 9986
134 6R6G 44 QQ ribosomal protein uS15 9986
135 6R6P 61 QQ ribosomal protein uS15 9986
136 6R5Q 65 QQ ribosomal protein uS15 9986
137 6QZP 74 SN 40S ribosomal protein S13 9606
138 6Q8Y 80 Y 40S ribosomal protein S13 4932
139 6I7O 32 Y, Yb 40S ribosomal protein S13 4932
140 6IP5 73 3K 40S ribosomal protein S13 9606
141 6IP6 72 3K 40S ribosomal protein S13 9606
142 6IP8 72 3K 40S ribosomal protein S13 9606
143 6MTB 64 NN 40S ribosomal protein S13 9986
144 6MTC 63 NN 40S ribosomal protein S13 9986
145 6MTD 65 NN uS15 9986
146 6MTE 64 NN uS15 9986
147 6HCQ 18 O2 uS15 9986
148 6HCJ 18 O2 uS15 9986
149 6HCM 15 O1 uS15 9986
150 6HCF 15 O1 uS15 9986
151 6GZ3 30 BN ribosomal protein uS15 9986
152 6GZ4 33 BN ribosomal protein uS15 9986
153 6GZ5 30 BN ribosomal protein uS15 9986
154 6GSM 17 N KLLA0F18040p 28985
155 6GSN 37 N KLLA0F18040p 28985
156 6GQV 61 AD 40S ribosomal protein S13 4932
157 6GQ1 61 AD 40S ribosomal protein S13 4932
158 6GQB 61 AD 40S ribosomal protein S13 4932
159 6D9J 63 OO uS15 9986
160 6D90 64 OO uS15 9986
161 6G5H 11 N 40S ribosomal protein S13 9606
162 6G5I 15 N 40S ribosomal protein S13 9606
163 6G4S 28 N 40S ribosomal protein S13 9606
164 6G4W 24 N 40S ribosomal protein S13 9606
165 6G51 12 N 40S ribosomal protein S13 9606
166 6G53 12 N 40S ribosomal protein S13 9606
167 6G18 22 N 40S ribosomal protein S13 9606
168 6FYX 17 N KLLA0F18040p 28985
169 6FYY 17 N KLLA0F18040p 28985
170 6FEC 28 Z 40S ribosomal protein S13 9606
171 6FAI 24 N 40S ribosomal protein S13 4932
172 6EML 21 Y 40S ribosomal protein S13 4932
173 6EK0 74 SN 40S ribosomal protein S13 9606
174 6AZ1 20 T ribosomal protein S15 5661
175 5OQL 41 s 40S ribosomal protein S13-like protein 209285
176 5OPT 10 R 40S ribosomal protein S13, putative 5693
177 5WLC 39 NF rpS13_uS15 4932
178 5XYI 15 N 40S ribosomal protein S13, putative 5722
179 5XXU 15 N Ribosomal protein uS15 5811
180 5OA3 18 N 40S ribosomal protein S13 9606
181 5WYJ 44 SO 40S ribosomal protein S13 4932
182 5WYK 40 SO 40S ribosomal protein S13 4932
183 5MC6 26 Y 40S ribosomal protein S13 4932
184 5M1J 21 N2 40S ribosomal protein S13 4932
185 5LZS 64 NN uS15 9986
186 5LZT 65 NN uS15 9986
187 5LZU 64 NN uS15 9986
188 5LZV 65 NN uS15 9986
189 5LZW 65 NN uS15 9986
190 5LZX 65 NN uS15 9986
191 5LZY 63 NN uS15 9986
192 5LZZ 65 NN uS15 9986
193 5T2A 62 AG uS15 5661
194 5T2C 56 AN 40S ribosomal protein S13 9606
195 5LL6 11 Y 40S ribosomal protein S13 4932
196 5LKS 73 SN 40S ribosomal protein S13 9606
197 5K0Y 22 Z ribosomal protein uS15 9986
198 5JUO 63 KB uS15 (yeast S13) 4932
199 5JUP 63 KB uS15 (yeast S13) 4932
200 5JUS 63 KB uS15 (yeast S13) 4932
201 5JUT 63 KB uS15 (yeast S13) 4932
202 5JUU 63 KB uS15 (yeast S13) 4932
203 5JPQ 28 v uS15 209285
204 5JB3 4 Q 30S ribosomal protein S15 30S ribosomal protein uS15 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
205 5JBH 16 Q 30S ribosomal protein uS15 30S ribosomal protein uS15 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
206 5IT7 61 N KLLA0F18040p 28985
207 5IT9 14 N Ribosomal protein uS15 28985
208 5FLX 15 N 40S RIBOSOMAL PROTEIN S13 9986
209 3JBN 30 U 40S ribosomal protein uS15 5833
210 3JBO 7 U 40S ribosomal protein uS15 5833
211 3JBP 30 U 40S ribosomal protein uS15 5833
212 3JAP 17 N uS15 28985
213 3JAQ 17 N uS15 28985
214 3JAM 15 N uS15 28985
215 3JAN 63 SN Ribosomal protein uS15 SEE REMARK 999 9986
216 3JAJ 64 SN Ribosomal protein uS15 SEE REMARK 999 9986
217 3JAG 65 NN uS15 9986
218 3JAH 65 NN uS15 9986
219 3JAI 65 NN uS15 9986
220 5A2Q 16 N RIBOSOMAL PROTEIN US15 9606
221 4UG0 75 SN 40S RIBOSOMAL PROTEIN S13 9606
222 5AJ0 63 BN 40S ribosomal protein S13 9606
223 4UER 25 O US15 4934
224 4D61 15 N 40S RIBOSOMAL PROTEIN S13 9986
225 4D5L 15 N 40S RIBOSOMAL PROTEIN US15 9986
226 3J81 15 N uS15 28985
227 3J80 11 N uS15 28985
228 3J7P 63 SN Ribosomal protein uS15 9823
229 3J7R 64 SN Ribosomal protein uS15 9823
230 4UJC 64 CN 40S RIBOSOMAL PROTEIN US15 9986
231 4UJD 64 CN 40S RIBOSOMAL PROTEIN ES15 9986
232 3J7A 21 U 40S ribosomal protein uS15 5833
233 3J77 59 13 40S ribosomal protein S13 4932
234 3J78 59 13 40S ribosomal protein S13 4932
235 3J6X 60 13 40S ribosomal protein S13 4932
236 3J6Y 60 13 40S ribosomal protein S13 4932
237 4UJE 18 BN 40S RIBOSOMAL PROTEIN S13 9986
238 4V92 16 BN US15 28985
239 4V7E 18 BN 40S ribosomal protein S15 4565
240 4V8Y 22 AN 40S RIBOSOMAL PROTEIN S13 4932
241 4V8Z 22 AN 40S RIBOSOMAL PROTEIN S13 4932
242 4V4N 29 BQ 30S ribosomal protein S15P/S13E SEE REMARK 999 2190
243 4V6W 10 AN 40S ribosomal protein S13 7227
244 4V6X 10 AN 40S ribosomal protein S13 9606
245 4V8M 15 AG 40S RIBOSOMAL PROTEIN S13, PUTATIVE 185431
246 4V6U 1 AQ 30S ribosomal protein S15P/S13e 2261
247 4V6I 16 AO 40S ribosomal protein rpS13 (S15p) 4932