4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 413
95 % 2 70 529
90 % 2 76 512
70 % 2 93 461
50 % 2 191 256
40 % 2 195 257
30 % 2 195 273
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 351
95 % 2 80 459
90 % 2 92 432
70 % 2 186 251
50 % 2 201 235
40 % 2 209 235
30 % 2 209 247
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1561
95 % 2 65 620
90 % 2 68 627
70 % 2 84 536
50 % 2 84 567
40 % 2 84 607
30 % 2 84 624
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 364
95 % 2 78 473
90 % 2 90 437
70 % 2 95 449
50 % 2 198 240
40 % 2 198 249
30 % 2 198 264
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1144
95 % 2 51 775
90 % 2 53 776
70 % 2 85 505
50 % 2 85 533
40 % 2 88 560
30 % 2 88 586
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 356
95 % 2 78 465
90 % 2 90 442
70 % 2 195 241
50 % 2 198 242
40 % 2 206 238
30 % 2 207 249
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 350
95 % 2 92 414
90 % 2 92 429
70 % 2 199 228
50 % 2 200 237
40 % 2 200 248
30 % 2 200 262
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 536
95 % 2 68 546
90 % 2 68 574
70 % 2 86 499
50 % 2 181 294
40 % 2 189 287
30 % 2 189 304
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 353
95 % 2 91 416
90 % 2 92 430
70 % 2 92 462
50 % 2 192 250
40 % 2 200 247
30 % 2 201 261
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 420
95 % 2 70 531
90 % 2 82 492
70 % 2 82 519
50 % 2 178 295
40 % 2 178 306
30 % 2 178 330
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 610
95 % 2 51 787
90 % 2 51 824
70 % 2 59 771
50 % 2 68 712
40 % 2 133 405
30 % 2 133 418
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 376
95 % 2 76 477
90 % 2 88 453
70 % 2 185 252
50 % 2 194 246
40 % 2 204 241
30 % 2 204 252
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 382
95 % 2 74 495
90 % 2 74 521
70 % 2 86 496
50 % 2 176 304
40 % 2 176 316
30 % 2 180 314
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 384
95 % 2 74 490
90 % 2 74 516
70 % 2 86 491
50 % 2 86 525
40 % 2 88 539
30 % 2 88 566
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 389
95 % 2 73 501
90 % 2 85 473
70 % 2 85 501
50 % 2 172 315
40 % 2 172 328
30 % 2 172 346
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 359
95 % 2 94 412
90 % 2 94 428
70 % 2 202 231
50 % 3 213 221
40 % 3 213 231
30 % 38 809 22
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 369
95 % 2 90 419
90 % 2 90 436
70 % 2 205 222
50 % 2 215 217
40 % 2 215 228
30 % 2 215 237
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 368
95 % 2 78 476
90 % 2 90 447
70 % 2 90 474
50 % 2 193 263
40 % 2 193 277
30 % 2 193 291
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 597
95 % 2 50 796
90 % 2 50 832
70 % 2 58 772
50 % 2 58 803
40 % 2 58 839
30 % 2 60 865
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 570
95 % 1 47 762
90 % 1 51 765
70 % 1 51 788
50 % 1 86 545
40 % 1 86 585
30 % 1 86 606
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 378
95 % 2 87 437
90 % 2 87 461
70 % 2 176 269
50 % 2 188 264
40 % 2 188 278
30 % 2 188 292
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 390
95 % 2 74 499
90 % 2 84 480
70 % 2 91 471
50 % 2 97 472
40 % 2 162 337
30 % 2 162 356
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 644
95 % 2 90 425
90 % 2 90 446
70 % 2 193 246
50 % 2 204 228
40 % 2 205 239
30 % 2 205 251
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 388
95 % 2 72 505
90 % 2 73 527
70 % 2 171 279
50 % 2 179 298
40 % 2 179 311
30 % 2 179 332
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 374
95 % 2 95 482
90 % 2 107 458
70 % 2 107 485
50 % 2 172 357
40 % 2 172 371
30 % 2 172 387
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 777
95 % 1 43 964
90 % 1 43 990
70 % 1 80 613
50 % 1 84 610
40 % 1 84 655
30 % 1 84 672
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 400
95 % 3 77 452
90 % 3 77 481
70 % 3 77 509
50 % 5 178 276
40 % 5 184 266
30 % 5 185 278
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1060
95 % 1 27 1380
90 % 1 27 1426
70 % 3 33 1241
50 % 3 33 1288
40 % 3 33 1323
30 % 3 33 1364
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 295
95 % 2 97 388
90 % 2 99 396
70 % 2 174 280
50 % 2 187 277
40 % 47 258 200
30 % 47 258 212
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 587
95 % 2 51 793
90 % 2 51 828
70 % 2 59 770
50 % 2 66 738
40 % 2 66 771
30 % 2 66 813
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 289
95 % 2 103 354
90 % 2 105 361
70 % 2 105 400
50 % 2 198 251
40 % 2 198 261
30 % 2 200 271
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 266
95 % 2 107 331
90 % 2 107 350
70 % 2 109 385
50 % 2 157 344
40 % 2 198 263
30 % 2 198 279
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 317
95 % 2 95 401
90 % 2 95 420
70 % 2 97 439
50 % 2 183 290
40 % 2 185 293
30 % 2 185 315
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 293
95 % 2 102 358
90 % 2 103 370
70 % 2 106 393
50 % 2 107 447
40 % 2 111 459
30 % 2 111 477
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 270
95 % 2 103 350
90 % 2 103 371
70 % 2 105 398
50 % 2 185 281
40 % 2 185 298
30 % 2 184 323
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 321
95 % 2 106 356
90 % 2 106 375
70 % 2 108 401
50 % 2 169 327
40 % 2 171 335
30 % 2 171 354
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 271
95 % 2 102 359
90 % 2 102 377
70 % 2 104 405
50 % 2 193 272
40 % 2 195 274
30 % 47 266 205
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 345
95 % 2 83 449
90 % 2 85 471
70 % 2 85 498
50 % 2 176 309
40 % 2 176 322
30 % 2 176 339
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1147
95 % 2 98 387
90 % 2 100 394
70 % 3 186 259
50 % 3 190 271
40 % 3 190 284
30 % 3 190 300
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 282
95 % 2 101 373
90 % 2 101 393
70 % 2 103 414
50 % 2 103 465
40 % 2 183 305
30 % 2 183 328
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 386
95 % 3 72 503
90 % 3 72 533
70 % 3 84 502
50 % 3 170 317
40 % 3 170 330
30 % 3 170 349
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 269
95 % 2 103 357
90 % 2 103 376
70 % 2 105 404
50 % 2 105 459
40 % 2 105 487
30 % 2 105 505
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 262
95 % 2 108 330
90 % 2 108 348
70 % 2 183 266
50 % 2 197 254
40 % 2 197 268
30 % 2 197 283
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 307
95 % 2 95 403
90 % 2 102 380
70 % 2 104 407
50 % 2 105 458
40 % 2 106 484
30 % 2 106 502
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 257
95 % 2 106 334
90 % 2 108 342
70 % 2 108 389
50 % 2 195 259
40 % 2 195 272
30 % 2 195 288
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 268
95 % 2 103 355
90 % 2 105 363
70 % 2 105 403
50 % 2 186 287
40 % 2 191 289
30 % 2 191 311
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 297
95 % 2 97 391
90 % 2 97 408
70 % 2 100 421
50 % 2 185 285
40 % 2 186 296
30 % 2 186 320
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 283
95 % 2 101 377
90 % 2 103 383
70 % 2 103 416
50 % 2 176 318
40 % 2 177 324
30 % 2 178 337
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 294
95 % 2 97 390
90 % 2 99 400
70 % 2 99 428
50 % 2 175 316
40 % 2 181 317
30 % 2 188 309
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 464
95 % 2 72 606
90 % 2 72 635
70 % 2 73 657
50 % 2 73 685
40 % 2 73 723
30 % 2 74 722
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 265
95 % 2 104 348
90 % 2 106 353
70 % 2 197 240
50 % 2 198 252
40 % 2 198 262
30 % 2 198 277
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 371
95 % 2 77 478
90 % 2 89 456
70 % 2 182 262
50 % 2 192 253
40 % 2 192 265
30 % 2 200 263
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 483
95 % 2 66 629
90 % 2 66 660
70 % 2 67 678
50 % 2 67 716
40 % 2 114 491
30 % 2 114 512
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 434
95 % 2 77 560
90 % 2 78 581
70 % 2 78 601
50 % 2 78 635
40 % 2 80 660
30 % 2 81 671
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 250
95 % 2 108 322
90 % 2 110 334
70 % 2 110 382
50 % 2 193 265
40 % 2 193 279
30 % 2 193 293
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 304
95 % 2 97 396
90 % 2 99 404
70 % 2 99 436
50 % 2 171 325
40 % 2 184 299
30 % 2 186 316
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 309
95 % 2 98 383
90 % 2 100 391
70 % 2 100 420
50 % 2 188 275
40 % 2 189 288
30 % 2 191 299
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 330
95 % 2 89 434
90 % 2 91 444
70 % 2 91 472
50 % 2 91 508
40 % 2 91 548
30 % 2 91 576
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 263
95 % 3 103 346
90 % 3 105 352
70 % 3 105 395
50 % 3 146 361
40 % 3 146 375
30 % 3 146 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 275
95 % 2 101 369
90 % 2 101 388
70 % 2 103 410
50 % 2 185 282
40 % 2 185 295
30 % 2 185 319
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 264
95 % 2 104 347
90 % 2 104 368
70 % 2 106 396
50 % 2 189 274
40 % 2 193 280
30 % 2 194 290
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 274
95 % 2 102 366
90 % 2 102 384
70 % 2 104 411
50 % 2 181 307
40 % 2 183 313
30 % 2 183 334
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 357
95 % 2 79 463
90 % 2 91 433
70 % 2 91 463
50 % 2 203 229
40 % 2 203 242
30 % 2 203 256
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 300
95 % 2 97 393
90 % 2 97 410
70 % 2 99 430
50 % 2 170 326
40 % 2 170 338
30 % 2 170 358
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 253
95 % 2 107 328
90 % 2 107 346
70 % 2 109 384
50 % 2 188 280
40 % 2 199 259
30 % 2 201 270
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 299
95 % 2 102 370
90 % 2 102 389
70 % 2 104 413
50 % 2 104 463
40 % 2 178 320
30 % 2 188 312
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 261
95 % 2 104 345
90 % 2 104 366
70 % 2 148 309
50 % 2 193 266
40 % 2 193 282
30 % 2 193 295
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 305
95 % 2 97 399
90 % 2 97 416
70 % 2 99 438
50 % 2 99 486
40 % 2 106 474
30 % 2 106 495
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 277
95 % 2 101 368
90 % 2 101 386
70 % 2 177 275
50 % 2 189 273
40 % 2 191 283
30 % 2 192 297
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 553
95 % 1 50 737
90 % 1 50 775
70 % 1 96 469
50 % 1 96 506
40 % 1 96 543
30 % 1 96 571
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 348
95 % 2 81 461
90 % 2 81 491
70 % 2 164 284
50 % 2 164 329
40 % 2 164 341
30 % 2 164 361
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 308
95 % 2 94 407
90 % 2 96 411
70 % 2 169 282
50 % 2 181 299
40 % 2 181 308
30 % 2 182 329
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 310
95 % 2 94 405
90 % 2 94 423
70 % 2 96 443
50 % 2 184 283
40 % 2 185 294
30 % 23 208 258
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 377
95 % 2 77 486
90 % 2 77 510
70 % 2 89 488
50 % 2 183 288
40 % 2 188 290
30 % 2 188 310
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 374
95 % 3 95 482
90 % 3 107 458
70 % 3 107 485
50 % 3 172 357
40 % 3 172 371
30 % 3 172 387
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54536
95 % 1 43 1537
90 % 2 47 1440
70 % 2 48 1446
50 % 2 69 1018
40 % 2 69 1038
30 % 2 69 1091
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 375
95 % 2 76 483
90 % 2 88 457
70 % 2 88 484
50 % 2 189 269
40 % 2 189 286
30 % 2 192 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 15 AN, CN 40S ribosomal protein S13 4932
2 4U4R 15 C3, c3 40S ribosomal protein S13 4932
3 4U3U 15 C3, c3 40S ribosomal protein S13 4932
4 5TBW 62 O, c3 40S ribosomal protein S13 4932
5 4U3M 15 C3, c3 40S ribosomal protein S13 4932
6 4U3N 15 C3, c3 40S ribosomal protein S13 4932
7 4U52 15 C3, c3 40S ribosomal protein S13 4932
8 4U4Q 15 C3, c3 40S ribosomal protein S13 4932
9 4U6F 15 C3, c3 40S ribosomal protein S13 4932
10 4U4U 15 C3, c3 40S ribosomal protein S13 4932
11 4U4Z 15 C3, c3 40S ribosomal protein S13 4932
12 4U4Y 15 C3, c3 40S ribosomal protein S13 4932
13 4U4N 15 C3, c3 40S ribosomal protein S13 4932
14 4U55 15 C3, c3 40S ribosomal protein S13 4932
15 5DAT 15 C3, c3 40S ribosomal protein S13 4932
16 5I4L 15 C3, c3 40S ribosomal protein S13 4932
17 4U51 15 C3, c3 40S ribosomal protein S13 4932
18 6HHQ 61 O, c3 40S ribosomal protein S13 4932
19 5OBM 59 C3, c3 40S ribosomal protein S13 4932
20 4U53 15 C3, c3 40S ribosomal protein S13 4932
21 5ON6 63 O, c3 40S ribosomal protein S13 4932
22 4U50 15 C3, c3 40S ribosomal protein S13 4932
23 5NDV 59 C3, c3 40S ribosomal protein S13 4932
24 5LYB 15 C3, c3 40S ribosomal protein S13 4932
25 4U56 15 C3, c3 40S ribosomal protein S13 4932
26 5TGA 15 C3, c3 40S ribosomal protein S13 4932
27 5MEI 62 O, c3 40S ribosomal protein S13 4932
28 5FCJ 15 C3, c3 40S ribosomal protein S13 4932
29 4U4O 15 C3, c3 40S ribosomal protein S13 4932
30 5DGV 15 C3, c3 40S ribosomal protein S13 4932
31 5DGE 15 C3, c3 40S ribosomal protein S13 4932
32 5NDW 8 C3, c3 40S ribosomal protein S13 4932
33 5NDG 15 C3, c3 40S ribosomal protein S13 4932
34 5FCI 15 C3, c3 40S ribosomal protein S13 4932
35 5DC3 15 C3, c3 40S ribosomal protein S13 4932
36 5DGF 15 C3, c3 40S ribosomal protein S13 4932
37 5TGM 15 C3, c3 40S ribosomal protein S13 4932
38 4V7R 8 AG, CG 40S ribosomal protein S13 4932
39 5VYC 14 N1, N2, N3, N4, N5, N6 40S ribosomal protein S13 9606
40 4KZZ 14 N 40S Ribosomal Protein S13 9986
41 4KZX 14 N 40S ribosomal protein S13 9986
42 4KZY 14 N 40S Ribosomal Protein S13 9986
43 6ZOJ 15 N 40S ribosomal protein S13 9606
44 6YAL 16 P 40S ribosomal protein uS15 9986
45 6YAM 16 P ribosomal protein uS15 9986
46 6YAN 15 P ribosomal protein uS15 9986
47 6W2S 12 O uS15 9986
48 6W2T 11 O uS15 9986
49 6Y7C 13 N 40S ribosomal protein S13 4932
50 6Y57 62 SN 40S ribosomal protein S13 9606
51 6Y2L 62 SN 40S ribosomal protein S13 9606
52 6Y0G 63 SN 40S ribosomal protein S13 9606
53 6TNU 17 Y 40S ribosomal protein S13 4932
54 6UZ7 61 N KLLA0F18040p 28985
55 6TB3 17 Y 40S ribosomal protein S13 4932
56 6T83 16 Nb, o 40S ribosomal protein S13 4932
57 6T7T 18 SN 40S ribosomal protein S13 4932
58 6T7I 16 SN 40S ribosomal protein S13 4932
59 6T4Q 15 SN 40S ribosomal protein S13 4932
60 6SV4 32 Y, Yb, Yc 40S ribosomal protein S13 4932
61 6SNT 16 N 40S ribosomal protein S13 4932
62 6SGC 15 O1 Ribosomal_S13_N domain-containing protein 9986
63 6S47 59 BO 40S ribosomal protein S13 4932
64 6RXT 38 Ch 40S ribosomal protein S13-like protein 209285
65 6RXU 41 Ch 40S ribosomal protein S13-like protein 209285
66 6RXV 41 Ch 40S ribosomal protein S13-like protein 209285
67 6RXX 23 Ch 40S ribosomal protein S13-like protein 209285
68 6RXY 37 Ch 40S ribosomal protein S13-like protein 209285
69 6RXZ 40 Ch 40S ribosomal protein S13-like protein 209285
70 6P5I 15 O uS15 9986
71 6P5J 15 O uS15 9986
72 6P5K 61 O uS15 9986
73 6P5N 61 O uS15 9986
74 6P4G 15 O uS15 9986
75 6P4H 16 O uS15 9986
76 6OM7 27 SN 40S ribosomal protein S13 9606
77 6OLZ 60 BN 40S ribosomal protein S13 9606
78 6OM0 27 SN 40S ribosomal protein S13 9606
79 6OLE 27 SN 40S ribosomal protein S13 9606
80 6OLF 27 SN 40S ribosomal protein S13 9606
81 6OLG 63 BN 40S ribosomal protein S13 9606
82 6OLI 27 SN 40S ribosomal protein S13 9606
83 6OKK 21 U 40S ribosomal protein S15 5833
84 6RBD 13 N 40S ribosomal protein S13 4932
85 6RBE 11 N 40S ribosomal protein S13 4932
86 6R7Q 27 QQ ribosomal protein uS15 9986
87 6R6G 44 QQ ribosomal protein uS15 9986
88 6R6P 61 QQ ribosomal protein uS15 9986
89 6R5Q 65 QQ ribosomal protein uS15 9986
90 6QZP 74 SN 40S ribosomal protein S13 9606
91 6Q8Y 80 Y 40S ribosomal protein S13 4932
92 6I7O 32 Y, Yb 40S ribosomal protein S13 4932
93 6IP5 73 3K 40S ribosomal protein S13 9606
94 6IP6 72 3K 40S ribosomal protein S13 9606
95 6IP8 72 3K 40S ribosomal protein S13 9606
96 6MTB 64 NN 40S ribosomal protein S13 9986
97 6MTC 63 NN 40S ribosomal protein S13 9986
98 6MTD 65 NN uS15 9986
99 6MTE 64 NN uS15 9986
100 6HCQ 18 O2 uS15 9986
101 6HCJ 18 O2 uS15 9986
102 6HCM 15 O1 uS15 9986
103 6HCF 15 O1 uS15 9986
104 6GZ3 30 BN ribosomal protein uS15 9986
105 6GZ4 33 BN ribosomal protein uS15 9986
106 6GZ5 30 BN ribosomal protein uS15 9986
107 6GSM 17 N KLLA0F18040p 28985
108 6GSN 37 N KLLA0F18040p 28985
109 6GQV 61 AD 40S ribosomal protein S13 4932
110 6GQ1 61 AD 40S ribosomal protein S13 4932
111 6GQB 61 AD 40S ribosomal protein S13 4932
112 6D9J 63 OO uS15 9986
113 6D90 64 OO uS15 9986
114 6G5H 11 N 40S ribosomal protein S13 9606
115 6G5I 15 N 40S ribosomal protein S13 9606
116 6G4S 28 N 40S ribosomal protein S13 9606
117 6G4W 24 N 40S ribosomal protein S13 9606
118 6G51 12 N 40S ribosomal protein S13 9606
119 6G53 12 N 40S ribosomal protein S13 9606
120 6G18 22 N 40S ribosomal protein S13 9606
121 6FYX 17 N KLLA0F18040p 28985
122 6FYY 17 N KLLA0F18040p 28985
123 6FEC 28 Z 40S ribosomal protein S13 9606
124 6FAI 24 N 40S ribosomal protein S13 4932
125 6EML 21 Y 40S ribosomal protein S13 4932
126 6EK0 74 SN 40S ribosomal protein S13 9606
127 6AZ1 20 T ribosomal protein S15 5661
128 5OQL 41 s 40S ribosomal protein S13-like protein 209285
129 5OPT 10 R 40S ribosomal protein S13, putative 5693
130 5WLC 39 NF rpS13_uS15 4932
131 5XXU 15 N Ribosomal protein uS15 5811
132 5OA3 18 N 40S ribosomal protein S13 9606
133 5WYJ 44 SO 40S ribosomal protein S13 4932
134 5WYK 40 SO 40S ribosomal protein S13 4932
135 5MC6 26 Y 40S ribosomal protein S13 4932
136 5M1J 21 N2 40S ribosomal protein S13 4932
137 5LZS 64 NN uS15 9986
138 5LZT 65 NN uS15 9986
139 5LZU 64 NN uS15 9986
140 5LZV 65 NN uS15 9986
141 5LZW 65 NN uS15 9986
142 5LZX 65 NN uS15 9986
143 5LZY 63 NN uS15 9986
144 5LZZ 65 NN uS15 9986
145 5T2A 62 AG uS15 5661
146 5T2C 56 AN 40S ribosomal protein S13 9606
147 5LL6 11 Y 40S ribosomal protein S13 4932
148 5LKS 73 SN 40S ribosomal protein S13 9606
149 5K0Y 22 Z ribosomal protein uS15 9986
150 5JUO 63 KB uS15 (yeast S13) 4932
151 5JUP 63 KB uS15 (yeast S13) 4932
152 5JUS 63 KB uS15 (yeast S13) 4932
153 5JUT 63 KB uS15 (yeast S13) 4932
154 5JUU 63 KB uS15 (yeast S13) 4932
155 5JPQ 28 v uS15 209285
156 5IT7 61 N KLLA0F18040p 28985
157 5IT9 14 N Ribosomal protein uS15 28985
158 5FLX 15 N 40S RIBOSOMAL PROTEIN S13 9986
159 3JBN 30 U 40S ribosomal protein uS15 5833
160 3JBO 7 U 40S ribosomal protein uS15 5833
161 3JBP 30 U 40S ribosomal protein uS15 5833
162 3JAP 17 N uS15 28985
163 3JAQ 17 N uS15 28985
164 3JAM 15 N uS15 28985
165 3JAN 63 SN Ribosomal protein uS15 SEE REMARK 999 9986
166 3JAJ 64 SN Ribosomal protein uS15 SEE REMARK 999 9986
167 3JAG 65 NN uS15 9986
168 3JAH 65 NN uS15 9986
169 3JAI 65 NN uS15 9986
170 5A2Q 16 N RIBOSOMAL PROTEIN US15 9606
171 4UG0 75 SN 40S RIBOSOMAL PROTEIN S13 9606
172 5AJ0 63 BN 40S ribosomal protein S13 9606
173 4UER 25 O US15 4934
174 4D61 15 N 40S RIBOSOMAL PROTEIN S13 9986
175 4D5L 15 N 40S RIBOSOMAL PROTEIN US15 9986
176 3J81 15 N uS15 28985
177 3J80 11 N uS15 28985
178 3J7P 63 SN Ribosomal protein uS15 9823
179 3J7R 64 SN Ribosomal protein uS15 9823
180 4UJC 64 CN 40S RIBOSOMAL PROTEIN US15 9986
181 4UJD 64 CN 40S RIBOSOMAL PROTEIN ES15 9986
182 3J7A 21 U 40S ribosomal protein uS15 5833
183 3J77 59 13 40S ribosomal protein S13 4932
184 3J78 59 13 40S ribosomal protein S13 4932
185 3J6X 60 13 40S ribosomal protein S13 4932
186 3J6Y 60 13 40S ribosomal protein S13 4932
187 4UJE 18 BN 40S RIBOSOMAL PROTEIN S13 9986
188 4V92 16 BN US15 28985
189 4V7E 18 BN 40S ribosomal protein S15 4565
190 4V8Y 22 AN 40S RIBOSOMAL PROTEIN S13 4932
191 4V8Z 22 AN 40S RIBOSOMAL PROTEIN S13 4932
192 4V6W 10 AN 40S ribosomal protein S13 7227
193 4V6X 10 AN 40S ribosomal protein S13 9606
194 4V8M 15 AG 40S RIBOSOMAL PROTEIN S13, PUTATIVE 185431
195 4V6I 16 AO 40S ribosomal protein rpS13 (S15p) 4932