4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 234 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 89 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 107 384
70 % 2 115 396
50 % 2 226 232
40 % 2 228 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 108 383
70 % 2 229 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 128 351
90 % 2 110 371
70 % 2 233 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 111 352
90 % 2 111 365
70 % 2 112 412
50 % 2 228 234
40 % 2 239 227
30 % 2 238 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 204 276
40 % 2 205 283
30 % 2 204 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 100 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 209 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 79 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 112 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 110 378
70 % 2 247 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 113 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 63 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 84 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 104 388
90 % 2 103 411
70 % 2 207 244
50 % 2 219 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 355
95 % 2 93 444
90 % 2 103 426
70 % 2 108 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 109 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 190 266
50 % 2 200 286
40 % 2 200 295
30 % 2 205 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 11 487
50 % 2 191 337
40 % 2 191 351
30 % 2 189 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 197 268
40 % 5 203 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 207 267
40 % 47 275 196
30 % 47 271 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 595
95 % 2 85 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 112 345
90 % 2 115 352
70 % 2 114 395
50 % 2 220 251
40 % 2 220 253
30 % 2 221 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 273
95 % 2 116 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 218 254
30 % 2 219 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 200 283
40 % 2 204 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 160 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 112 363
70 % 2 117 394
50 % 2 206 273
40 % 2 207 279
30 % 2 198 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 111 348
90 % 2 128 368
70 % 2 114 403
50 % 2 215 263
40 % 2 215 260
30 % 2 216 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 96 488
50 % 2 190 304
40 % 2 192 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 104 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 212 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 286
95 % 2 111 366
90 % 2 108 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 200 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 276
95 % 2 115 342
90 % 2 113 364
70 % 2 114 398
50 % 2 114 453
40 % 2 131 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 117 325
90 % 2 118 345
70 % 2 205 255
50 % 2 216 253
40 % 2 219 255
30 % 2 215 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 111 369
70 % 2 114 402
50 % 2 207 270
40 % 2 207 275
30 % 2 206 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 52 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 215 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 274
95 % 2 112 346
90 % 2 115 355
70 % 2 131 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 106 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 206 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 127 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 231 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 197 301
30 % 2 209 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 105 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 240 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 26 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 82 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 214 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 298
95 % 2 107 383
90 % 2 106 398
70 % 2 109 431
50 % 2 192 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 209 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 95 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 130 267
95 % 3 112 337
90 % 3 52 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 280
95 % 2 111 353
90 % 2 111 375
70 % 2 112 409
50 % 2 206 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 115 389
50 % 2 204 264
40 % 2 215 261
30 % 2 214 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 283
95 % 2 110 360
90 % 2 112 381
70 % 2 114 411
50 % 2 230 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 197 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 106 433
50 % 2 192 307
40 % 2 192 318
30 % 2 191 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 295
95 % 2 111 358
90 % 2 112 373
70 % 2 112 407
50 % 2 114 461
40 % 2 195 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 113 336
90 % 2 112 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 297
95 % 2 107 381
90 % 2 103 408
70 % 2 108 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 214 255
40 % 2 216 259
30 % 2 210 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 91 484
50 % 1 97 524
40 % 1 96 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 98 417
90 % 2 101 431
70 % 2 194 269
50 % 2 202 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 91 436
90 % 2 97 454
70 % 2 109 435
50 % 2 215 252
40 % 2 219 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 11 487
50 % 3 191 337
40 % 3 191 351
30 % 3 189 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 340
95 % 2 96 437
90 % 2 108 406
70 % 2 104 436
50 % 2 224 243
40 % 2 224 245
30 % 2 226 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4YBB 20 AT, BT 30S ribosomal protein S20 562
2 5J7L 20 AT, BT 30S ribosomal protein S20 562
3 4WOI 20 AT, DT 30S ribosomal protein S20 562
4 6I7V 24 AT, BT 30S ribosomal protein S20 562
5 5JC9 20 AT, BT 30S ribosomal protein S20 562
6 5J8A 20 AT, BT 30S ribosomal protein S20 562
7 5J5B 20 AT, BT 30S ribosomal protein S20 562
8 4U27 20 AT, CT 30S ribosomal protein S20 562
9 4U26 20 AT, CT 30S ribosomal protein S20 562
10 5IT8 20 AT, BT 30S ribosomal protein S20 562
11 4V9D 20 AT, BT 30S ribosomal protein S20 562
12 4V9P 52 BT, DT, FT, HT 30S ribosomal protein S20 562
13 5J91 20 AT, BT 30S ribosomal protein S20 562
14 5J88 20 AT, BT 30S ribosomal protein S20 562
15 4U24 20 AT, CT 30S ribosomal protein S20 562
16 4V9O 53 BT, DT, FT, HT 30S ribosomal protein S20 562
17 4WF1 20 AT, CT 30S ribosomal protein S20 562
18 4U25 20 AT, CT 30S ribosomal protein S20 562
19 4WWW 51 QT, XT 30S ribosomal protein S20 562
20 4V7T 20 AT, CT 30S ribosomal protein S20 562
21 4V7U 20 AT, CT 30S ribosomal protein S20 562
22 4V6C 19 AT, CT 30S ribosomal protein S20 562
23 4V7V 20 AT, CT 30S ribosomal protein S20 562
24 4V7S 20 AT, CT 30S ribosomal protein S20 562
25 6LKQ 19 S 30S ribosomal protein S20 562
26 4U20 20 AT, CT 30S ribosomal protein S20 562
27 4U1V 20 AT, CT 30S ribosomal protein S20 562
28 4V9C 20 AT, CT 30S ribosomal protein S20 562
29 4V85 20 AT 30S ribosomal protein S20 562
30 4U1U 20 AT, CT 30S ribosomal protein S20 562
31 4V6D 19 AT, CT 30S ribosomal protein S20 562
32 4V6E 19 AT, CT 30S ribosomal protein S20 562
33 4V52 19 AT, CT 30S ribosomal protein S20 562
34 4V89 20 AT 30S ribosomal protein S20 562
35 4V54 19 AT, CT 30S ribosomal protein S20 562
36 4V50 22 AT, CT 30S ribosomal protein S20 562
37 4V57 17 AT, CT 30S ribosomal protein S20 562
38 4V64 19 AT, CT 30S ribosomal protein S20 562
39 4V4H 19 AT, CT 30S RIBOSOMAL PROTEIN S20 562
40 4V4Q 19 AT, CT 30S ribosomal protein S20 562
41 4V5B 52 BT, DT 30S RIBOSOMAL PROTEIN S20 RESIDUES 2-87 562
42 6BY1 55 AT, BT 30S ribosomal protein S20 562
43 4V53 19 AT, CT 30S ribosomal protein S20 562
44 4V56 17 AT, CT 30S ribosomal protein S20 562
45 4V55 19 AT, CT 30S ribosomal protein S20 562
46 4V5Y 19 AT, CT 30S ribosomal protein S20 562
47 6ZU1 20 AT 30S ribosomal protein S20 562
48 6ZTJ 20 AT 30S ribosomal protein S20 562
49 6ZTL 20 AT 30S ribosomal protein S20 562
50 6ZTM 20 AT 30S ribosomal protein S20 562
51 6ZTN 20 AT 30S ribosomal protein S20 562
52 6ZTP 20 AT 30S ribosomal protein S20 562
53 6XII 18 E 30S ribosomal protein S20 562
54 6XIJ 17 E 30S ribosomal protein S20 562
55 6XGF 18 E 30S ribosomal protein S20 562
56 6XDQ 19 E 30S ribosomal protein S20 562
57 6XDR 18 E 30S ribosomal protein S20 562
58 6XE0 19 T 30S ribosomal protein S20 562
59 6X9Q 19 E 30S ribosomal protein S20 562
60 6X7K 19 E 30S ribosomal protein S20 562
61 6X6T 19 E 30S ribosomal protein S20 562
62 6X7F 19 E 30S ribosomal protein S20 562
63 6YT9 13 u 30S ribosomal protein S20 470
64 6WNV 48 Y 30S ribosomal protein S20 562
65 6WNW 50 Y 30S ribosomal protein S20 562
66 6YSR 53 t 30S ribosomal protein S20 562
67 6YSS 53 t 30S ribosomal protein S20 562
68 6YST 53 t 30S ribosomal protein S20 562
69 6YSU 52 t 30S ribosomal protein S20 562
70 6YPU 13 u 30S ribosomal protein S20 470
71 6WD0 49 Y 30S ribosomal protein S20 562
72 6WD1 49 Y 30S ribosomal protein S20 562
73 6WD2 49 Y 30S ribosomal protein S20 562
74 6WD3 49 Y 30S ribosomal protein S20 562
75 6WD4 49 Y 30S ribosomal protein S20 562
76 6WD5 49 Y 30S ribosomal protein S20 562
77 6WD6 49 Y 30S ribosomal protein S20 562
78 6WD7 49 Y 30S ribosomal protein S20 562
79 6WD8 49 Y 30S ribosomal protein S20 562
80 6WD9 49 Y 30S ribosomal protein S20 562
81 6WDA 49 Y 30S ribosomal protein S20 562
82 6WDB 49 Y 30S ribosomal protein S20 562
83 6WDC 49 Y 30S ribosomal protein S20 562
84 6WDD 49 Y 30S ribosomal protein S20 562
85 6WDE 49 Y 30S ribosomal protein S20 562
86 6WDF 49 Y 30S ribosomal protein S20 562
87 6WDG 49 Y 30S ribosomal protein S20 562
88 6WDH 49 Y 30S ribosomal protein S20 562
89 6WDI 49 Y 30S ribosomal protein S20 562
90 6WDJ 49 Y 30S ribosomal protein S20 562
91 6WDK 49 Y 30S ribosomal protein S20 562
92 6WDL 49 Y 30S ribosomal protein S20 562
93 6WDM 49 Y 30S ribosomal protein S20 562
94 6VZJ 16 E 30S ribosomal protein S20 562
95 6VYQ 17 E 30S ribosomal protein S20 562
96 6VYR 17 E 30S ribosomal protein S20 562
97 6VYS 17 E 30S ribosomal protein S20 562
98 6VYT 16 E 30S ribosomal protein S20 562
99 6VYU 17 E 30S ribosomal protein S20 562
100 6VYW 17 E 30S ribosomal protein S20 562
101 6VYX 17 E 30S ribosomal protein S20 562
102 6VYY 17 E 30S ribosomal protein S20 562
103 6VYZ 17 E 30S ribosomal protein S20 562
104 6VZ2 17 E 30S ribosomal protein S20 562
105 6VZ3 17 E 30S ribosomal protein S20 562
106 6VZ5 17 E 30S ribosomal protein S20 562
107 6VZ7 17 E 30S ribosomal protein S20 562
108 6Y69 20 t 30S ribosomal protein S20 562
109 6VWL 50 s 30S ribosomal protein S20 562
110 6VWM 50 s 30S ribosomal protein S20 562
111 6VWN 50 s 30S ribosomal protein S20 562
112 6VU3 17 E 30S ribosomal protein S20 562
113 6V39 50 t 30S ribosomal protein S20 470
114 6V3A 50 t 30S ribosomal protein S20 470
115 6V3B 50 t 30S ribosomal protein S20 470
116 6V3E 20 t 30S ribosomal protein S20 470
117 6TC3 20 S201 30S ribosomal protein S20 562
118 6TBV 20 S201 30S ribosomal protein S20 562
119 6SZS 51 t 30S ribosomal protein S20 562
120 6SPC 20 t 30S ribosomal protein S20 287
121 6SPE 20 t 30S ribosomal protein S20 287
122 6SPF 52 t 30S ribosomal protein S20 287
123 6SPG 20 t 30S ribosomal protein S20 287
124 6OUO 52 y 30S ribosomal protein S20 562
125 6OSQ 53 y 30S ribosomal protein S20 562
126 6OST 50 y 30S ribosomal protein S20 562
127 6OT3 52 y 30S ribosomal protein S20 562
128 6OSK 52 y 30S ribosomal protein S20 562
129 6ORE 54 y 30S ribosomal protein S20 562
130 6ORL 50 y 30S ribosomal protein S20 562
131 6OGF 47 Y 30S ribosomal protein S20 562
132 6OGG 47 Y 30S ribosomal protein S20 562
133 6OGI 47 Y 30S ribosomal protein S20 562
134 6OFX 47 Y 30S ribosomal protein S20 562
135 6OG7 47 Y 30S ribosomal protein S20 562
136 6O9J 50 t 30S ribosomal protein S20 562
137 6O9K 20 t 30S ribosomal protein S20 562
138 6O7K 15 3 30S ribosomal protein S20 562
139 6NQB 15 T 30S ribosomal protein S20 562
140 6Q97 57 y 30S ribosomal protein S20 562
141 6Q98 55 y 30S ribosomal protein S20 562
142 6Q9A 55 y 30S ribosomal protein S20 562
143 6HRM 52 y 30S ribosomal protein S20 562
144 6H58 51 t, tt 30S ribosomal protein S20 562
145 6H4N 20 t 30S ribosomal protein S20 562
146 6GXM 53 t 30S ribosomal protein S20 562
147 6GXN 53 t 30S ribosomal protein S20 562
148 6GXO 53 t 30S ribosomal protein S20 562
149 6GXP 52 t 30S ribosomal protein S20 562
150 6GWT 53 t 30S ribosomal protein S20 562
151 6DNC 57 GB 30S ribosomal protein S20 562
152 6C4I 53 t 30S ribosomal protein S20 562
153 6BU8 50 T 30S ribosomal protein S20 562
154 6ENU 20 t 30S ribosomal protein S20 562
155 6ENJ 50 t 30S ribosomal protein S20 562
156 6ENF 20 t 30S ribosomal protein S20 562
157 6AWB 25 W 30S ribosomal protein S20 562
158 6AWC 25 W 30S ribosomal protein S20 562
159 6AWD 24 W 30S ribosomal protein S20 562
160 5WFK 53 t 30S ribosomal protein S20 562
161 5WFS 53 t 30S ribosomal protein S20 562
162 5WF0 53 t 30S ribosomal protein S20 562
163 5WE4 53 t 30S ribosomal protein S20 562
164 5WE6 53 t 30S ribosomal protein S20 562
165 5WDT 53 t 30S ribosomal protein S20 562
166 5O2R 54 t 30S ribosomal protein S20 562
167 5NWY 54 J 30S ribosomal protein S20 562
168 5NP6 23 W 30S ribosomal protein S20 562
169 5NO2 18 T 30S ribosomal protein S20 562
170 5NO3 19 T 30S ribosomal protein S20 562
171 5NO4 19 T 30S ribosomal protein S20 562
172 5UYK 50 T 30S ribosomal protein S20 562
173 5UYL 50 T 30S ribosomal protein S20 562
174 5UYM 50 T 30S ribosomal protein S20 562
175 5UYN 50 T 30S ribosomal protein S20 562
176 5UYP 50 T 30S ribosomal protein S20 562
177 5UYQ 50 T 30S ribosomal protein S20 562
178 5UZ4 19 T 30S ribosomal protein S20 562
179 5MY1 19 T 30S ribosomal protein S20 562
180 5U9F 58 T 30S ribosomal protein S20 562
181 5U9G 58 T 30S ribosomal protein S20 562
182 5U4I 51 t 30S ribosomal protein S20 Gene Name(s): rpsT b0023 JW0022 562
183 5MGP 51 t 30S ribosomal protein S20 562
184 5ME0 20 T 30S ribosomal protein S20 Taken from PDB entry 4YBB 562
185 5ME1 20 T 30S ribosomal protein S20 Taken from PDB entry 4YBB 562
186 5MDV 57 y 30S ribosomal protein S20 562
187 5MDW 57 y 30S ribosomal protein S20 562
188 5MDY 57 y 30S ribosomal protein S20 562
189 5MDZ 55 y 30S ribosomal protein S20 562
190 5H5U 1 1 30S ribosomal protein S20 562
191 5LZA 20 t 30S ribosomal protein S20 562
192 5LZB 20 t 30S ribosomal protein S20 562
193 5LZC 20 t 30S ribosomal protein S20 562
194 5LZD 20 t 30S ribosomal protein S20 562
195 5LZE 20 t 30S ribosomal protein S20 562
196 5LZF 20 t 30S ribosomal protein S20 562
197 5KPS 51 25 30S ribosomal protein S20 562
198 5KPV 50 24 30S ribosomal protein S20 562
199 5KPW 50 24 30S ribosomal protein S20 562
200 5KPX 50 24 30S ribosomal protein S20 562
201 5KCR 52 1t 30S ribosomal protein S20 562
202 5KCS 54 1t 30S ribosomal protein S20 562
203 5L3P 49 t 30S ribosomal protein S20 562
204 5JU8 20 AT 30S ribosomal protein S20 562
205 5JTE 20 AT 30S ribosomal protein S20 562
206 5IQR 50 y 30S ribosomal protein S20 562
207 3JCN 54 x 30S ribosomal protein S20 562
208 3JCJ 4 3 30S ribosomal protein S20 562
209 3JCD 19 t 30S ribosomal protein S20 562
210 3JCE 19 t 30S ribosomal protein S20 562
211 3JBU 19 T 30S ribosomal protein S20 562
212 3JBV 20 T 30S ribosomal protein S20 562
213 3JA1 5 ST 30S ribosomal protein S20 562
214 3J9Z 15 ST 30S ribosomal protein S20 562
215 3J9Y 13 t 30S ribosomal protein S20 562
216 5AFI 20 t 30S ribosomal protein S20 562
217 4V7D 54 BT 30S ribosomal protein S20 562
218 4V7C 20 AT 30S ribosomal protein S20 562
219 4V7B 20 AT 30S ribosomal protein S20 562
220 4V6Y 19 AT 30S ribosomal protein S20 562
221 4V6Z 19 AT 30S ribosomal protein S20 562
222 4V70 19 AT 30S ribosomal protein S20 562
223 4V71 19 AT 30S ribosomal protein S20 562
224 4V72 19 AT 30S ribosomal protein S20 562
225 4V73 19 AT 30S ribosomal protein S20 562
226 4V74 19 AT 30S ribosomal protein S20 562
227 4V75 19 AT 30S ribosomal protein S20 562
228 4V76 19 AT 30S ribosomal protein S20 562
229 4V77 19 AT 30S ribosomal protein S20 562
230 4V78 19 AT 30S ribosomal protein S20 562
231 4V79 19 AT 30S ribosomal protein S20 562
232 4V7A 19 AT 30S ribosomal protein S20 562
233 4V6V 12 AT 30S ribosomal protein S20 562
234 4V6T 20 AT 30S ribosomal protein S20 562
235 4ADV 20 T 30S RIBOSOMAL PROTEIN S20 562
236 4V6S 56 BV 30S ribosomal protein S20 562
237 4V6P 23 AW 30S ribosomal protein S20 562
238 4V6Q 23 AW 30S ribosomal protein S20 562
239 4V6R 23 AW 30S ribosomal protein S20 562
240 4V6N 57 BW 30S ribosomal protein S20 562
241 4V6O 23 AW 30S ribosomal protein S20 562
242 4A2I 20 T 30S RIBOSOMAL PROTEIN S20 562
243 2YKR 20 T 30S RIBOSOMAL PROTEIN S20 RESIDUES 3-87 562
244 4V6M 24 AT 30S ribosomal protein S20 562
245 4V6K 56 BX 30S ribosomal protein S20 562
246 4V6L 23 AX 30S ribosomal protein S20 562
247 4V5H 20 AT 30S RIBOSOMAL PROTEIN S20 RESIDUES 3-87 562
248 4V7I 55 BT 30S ribosomal protein S20 562
249 4V69 11 AT 30S ribosomal protein S20 562
250 4V65 14 AN 30S ribosomal protein S20 562
251 4V66 14 AN 30S ribosomal protein S20 562
252 4V4V 21 AT 30S ribosomal subunit protein S20 562
253 4V4W 21 AT 30S ribosomal subunit protein S20 562
254 4V47 46 BT 30S RIBOSOMAL PROTEIN S20 562
255 4V48 48 BT 30S RIBOSOMAL PROTEIN S20 562