4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 412
95 % 2 70 528
90 % 2 76 510
70 % 2 93 460
50 % 2 190 260
40 % 2 194 260
30 % 2 194 272
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 350
95 % 2 80 459
90 % 2 92 428
70 % 2 185 250
50 % 2 200 236
40 % 2 208 236
30 % 2 208 246
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1547
95 % 2 65 614
90 % 2 68 624
70 % 2 84 537
50 % 2 84 564
40 % 2 84 604
30 % 2 84 621
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 358
95 % 2 78 471
90 % 2 90 438
70 % 2 95 449
50 % 2 197 244
40 % 2 197 253
30 % 2 197 264
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1147
95 % 2 51 774
90 % 2 53 771
70 % 2 85 506
50 % 2 85 533
40 % 2 88 559
30 % 2 88 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 362
95 % 2 78 472
90 % 2 90 441
70 % 2 190 248
50 % 2 197 246
40 % 2 205 239
30 % 2 206 248
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 349
95 % 2 92 413
90 % 2 92 427
70 % 2 198 227
50 % 2 199 238
40 % 2 199 247
30 % 2 199 259
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 533
95 % 2 68 548
90 % 2 68 576
70 % 2 86 499
50 % 2 179 302
40 % 2 187 286
30 % 2 187 304
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 348
95 % 2 91 416
90 % 2 92 430
70 % 2 92 461
50 % 2 190 253
40 % 2 198 249
30 % 2 199 260
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 415
95 % 2 70 531
90 % 2 82 491
70 % 2 82 518
50 % 2 176 304
40 % 2 176 310
30 % 2 176 327
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 606
95 % 2 51 787
90 % 2 51 820
70 % 2 59 759
50 % 2 68 715
40 % 2 133 403
30 % 2 133 414
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 371
95 % 2 76 479
90 % 2 88 452
70 % 2 183 254
50 % 2 192 252
40 % 2 202 242
30 % 2 202 255
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 375
95 % 2 74 488
90 % 2 74 515
70 % 2 86 492
50 % 2 87 519
40 % 2 87 554
30 % 2 88 574
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 381
95 % 2 74 494
90 % 2 74 523
70 % 2 86 496
50 % 2 86 525
40 % 2 88 537
30 % 2 88 564
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 386
95 % 2 73 501
90 % 2 85 473
70 % 2 85 501
50 % 2 171 317
40 % 2 171 327
30 % 2 171 341
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 364
95 % 2 94 411
90 % 2 94 425
70 % 2 201 234
50 % 2 203 231
40 % 3 212 230
30 % 38 808 23
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 366
95 % 2 90 421
90 % 2 90 435
70 % 2 204 222
50 % 2 214 221
40 % 2 214 227
30 % 2 214 235
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 365
95 % 2 78 476
90 % 2 90 446
70 % 2 90 474
50 % 2 192 267
40 % 2 192 280
30 % 2 192 292
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 590
95 % 2 50 796
90 % 2 50 831
70 % 2 58 775
50 % 2 58 807
40 % 2 58 837
30 % 2 60 857
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 570
95 % 1 47 762
90 % 1 51 757
70 % 1 51 779
50 % 1 85 552
40 % 1 85 591
30 % 1 85 608
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 378
95 % 2 87 441
90 % 2 87 468
70 % 2 175 270
50 % 2 187 268
40 % 2 187 281
30 % 2 187 295
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 384
95 % 2 74 499
90 % 2 84 478
70 % 2 91 470
50 % 2 97 470
40 % 2 161 336
30 % 2 161 355
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 632
95 % 2 90 419
90 % 2 90 436
70 % 2 191 247
50 % 2 202 232
40 % 2 203 241
30 % 2 203 252
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 383
95 % 2 72 504
90 % 2 73 528
70 % 2 168 281
50 % 2 176 294
40 % 2 176 305
30 % 2 176 325
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 370
95 % 2 95 481
90 % 2 107 456
70 % 2 107 484
50 % 2 171 360
40 % 2 171 371
30 % 2 171 385
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 774
95 % 1 43 949
90 % 1 43 982
70 % 1 78 627
50 % 1 82 628
40 % 1 82 667
30 % 1 82 685
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 394
95 % 3 77 452
90 % 3 77 481
70 % 3 77 508
50 % 5 176 280
40 % 5 182 271
30 % 5 183 283
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1033
95 % 1 27 1370
90 % 1 27 1410
70 % 3 33 1227
50 % 3 33 1278
40 % 3 33 1315
30 % 3 33 1349
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 292
95 % 2 97 392
90 % 2 99 397
70 % 2 174 278
50 % 2 187 277
40 % 47 258 200
30 % 47 258 210
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 581
95 % 2 51 785
90 % 2 51 819
70 % 2 59 761
50 % 2 66 732
40 % 2 66 760
30 % 2 66 800
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 288
95 % 2 103 355
90 % 2 105 362
70 % 2 105 402
50 % 2 198 250
40 % 2 198 262
30 % 2 200 269
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 270
95 % 2 107 329
90 % 2 107 346
70 % 2 109 385
50 % 2 157 345
40 % 2 198 263
30 % 2 198 275
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 316
95 % 2 95 405
90 % 2 95 421
70 % 2 97 442
50 % 2 183 290
40 % 2 185 292
30 % 2 185 311
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 298
95 % 2 102 356
90 % 2 103 369
70 % 2 106 393
50 % 2 107 444
40 % 2 111 456
30 % 2 111 474
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 267
95 % 2 103 352
90 % 2 103 371
70 % 2 105 398
50 % 2 185 284
40 % 2 185 295
30 % 2 184 319
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 106 350
90 % 2 106 375
70 % 2 108 397
50 % 2 169 328
40 % 2 171 333
30 % 2 171 350
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 272
95 % 2 102 357
90 % 2 102 378
70 % 2 104 405
50 % 2 193 270
40 % 47 265 193
30 % 47 266 203
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 341
95 % 2 83 449
90 % 2 85 470
70 % 2 85 498
50 % 2 176 310
40 % 2 176 319
30 % 2 176 334
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1157
95 % 2 98 385
90 % 2 100 392
70 % 3 186 257
50 % 3 190 271
40 % 3 190 283
30 % 3 190 298
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 280
95 % 2 101 372
90 % 2 101 390
70 % 2 103 412
50 % 2 103 462
40 % 2 183 303
30 % 2 183 324
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 387
95 % 3 72 505
90 % 3 72 534
70 % 3 84 503
50 % 3 168 323
40 % 3 168 332
30 % 3 168 349
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 268
95 % 2 103 354
90 % 2 103 372
70 % 2 105 399
50 % 2 105 456
40 % 2 105 484
30 % 2 105 501
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 262
95 % 2 108 328
90 % 2 108 345
70 % 2 183 265
50 % 2 197 256
40 % 2 197 267
30 % 2 197 281
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 305
95 % 2 95 402
90 % 2 102 377
70 % 2 104 404
50 % 2 185 281
40 % 2 186 291
30 % 2 186 309
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 256
95 % 2 106 334
90 % 2 108 340
70 % 2 108 389
50 % 2 195 259
40 % 2 195 272
30 % 2 195 285
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 266
95 % 2 103 349
90 % 2 105 355
70 % 2 105 396
50 % 2 186 289
40 % 2 191 287
30 % 2 191 305
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 293
95 % 2 97 391
90 % 2 97 408
70 % 2 100 419
50 % 2 185 286
40 % 2 186 297
30 % 2 186 312
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 283
95 % 2 101 377
90 % 2 103 382
70 % 2 103 414
50 % 2 176 319
40 % 2 177 320
30 % 2 178 332
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 295
95 % 2 97 389
90 % 2 99 398
70 % 2 99 423
50 % 2 175 318
40 % 2 181 315
30 % 2 188 303
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 456
95 % 2 72 597
90 % 2 72 629
70 % 2 73 650
50 % 2 73 683
40 % 2 73 715
30 % 2 74 717
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 263
95 % 2 104 346
90 % 2 106 353
70 % 2 197 240
50 % 2 198 251
40 % 2 198 264
30 % 2 198 274
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 368
95 % 2 77 480
90 % 2 89 455
70 % 2 181 261
50 % 2 191 255
40 % 2 195 258
30 % 2 204 254
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 477
95 % 2 66 627
90 % 2 66 654
70 % 2 67 680
50 % 2 67 720
40 % 2 114 489
30 % 2 114 511
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 425
95 % 2 77 556
90 % 2 78 573
70 % 2 78 599
50 % 2 78 638
40 % 2 80 655
30 % 2 81 669
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 249
95 % 2 108 324
90 % 2 110 335
70 % 2 110 381
50 % 2 193 266
40 % 2 193 278
30 % 2 193 291
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 302
95 % 2 97 397
90 % 2 99 403
70 % 2 99 435
50 % 2 171 326
40 % 2 184 298
30 % 2 186 314
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 309
95 % 2 98 387
90 % 2 100 393
70 % 2 100 418
50 % 2 188 275
40 % 2 189 284
30 % 2 191 296
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 329
95 % 2 89 432
90 % 2 91 440
70 % 2 91 466
50 % 2 91 505
40 % 2 91 540
30 % 2 91 566
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 261
95 % 3 103 341
90 % 3 105 351
70 % 3 105 392
50 % 3 146 363
40 % 3 146 374
30 % 3 146 388
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 276
95 % 2 101 364
90 % 2 101 385
70 % 2 103 410
50 % 2 185 283
40 % 2 185 296
30 % 2 185 316
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 265
95 % 2 104 348
90 % 2 104 368
70 % 2 106 395
50 % 2 189 274
40 % 2 193 279
30 % 2 194 287
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 274
95 % 2 102 362
90 % 2 102 383
70 % 2 104 408
50 % 2 181 308
40 % 2 183 311
30 % 2 183 328
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 361
95 % 2 79 462
90 % 2 91 432
70 % 2 91 462
50 % 2 201 234
40 % 2 201 244
30 % 2 201 258
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 300
95 % 2 97 400
90 % 2 97 412
70 % 2 99 430
50 % 2 170 329
40 % 2 170 335
30 % 2 170 354
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 253
95 % 2 107 330
90 % 2 107 347
70 % 2 109 387
50 % 2 188 282
40 % 2 199 261
30 % 2 201 268
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 294
95 % 2 102 365
90 % 2 102 386
70 % 2 104 411
50 % 2 104 461
40 % 2 178 316
30 % 2 178 331
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 264
95 % 2 104 343
90 % 2 104 366
70 % 2 148 306
50 % 2 193 264
40 % 2 193 276
30 % 2 193 289
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 303
95 % 2 97 401
90 % 2 97 416
70 % 2 99 437
50 % 2 99 484
40 % 2 106 472
30 % 2 106 493
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 278
95 % 2 101 363
90 % 2 101 384
70 % 2 176 276
50 % 2 189 273
40 % 2 191 282
30 % 2 192 294
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 543
95 % 1 50 730
90 % 1 50 766
70 % 1 96 467
50 % 1 96 506
40 % 1 96 541
30 % 1 96 567
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 346
95 % 2 81 460
90 % 2 81 490
70 % 2 163 284
50 % 2 163 334
40 % 2 163 344
30 % 2 163 361
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 307
95 % 2 94 408
90 % 2 96 410
70 % 2 174 279
50 % 2 181 298
40 % 2 182 306
30 % 2 182 326
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 308
95 % 2 94 406
90 % 2 94 422
70 % 2 96 444
50 % 2 184 285
40 % 2 185 293
30 % 23 208 256
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 374
95 % 2 77 485
90 % 2 77 509
70 % 2 89 489
50 % 2 182 296
40 % 2 187 289
30 % 2 187 306
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 370
95 % 3 95 481
90 % 3 107 456
70 % 3 107 484
50 % 3 171 360
40 % 3 171 371
30 % 3 171 385
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54937
95 % 1 43 1535
90 % 2 47 1454
70 % 2 48 1448
50 % 2 69 1016
40 % 2 69 1043
30 % 2 69 1093
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 372
95 % 2 76 483
90 % 2 88 460
70 % 2 88 485
50 % 2 188 272
40 % 2 188 285
30 % 2 191 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 25 AX, CX 40S ribosomal protein S23-A 4932
2 4U4R 25 D3, d3 40S ribosomal protein S23-A 4932
3 4U3U 25 D3, d3 40S ribosomal protein S23-A 4932
4 5TBW 72 Y, d3 40S ribosomal protein S23-A 4932
5 4U3M 25 D3, d3 40S ribosomal protein S23-A 4932
6 4U3N 25 D3, d3 40S ribosomal protein S23-A 4932
7 4U52 25 D3, d3 40S ribosomal protein S23-A 4932
8 4U4Q 25 D3, d3 40S ribosomal protein S23-A 4932
9 4U6F 25 D3, d3 40S ribosomal protein S23-A 4932
10 4U4U 25 D3, d3 40S ribosomal protein S23-A 4932
11 4U4Z 25 D3, d3 40S ribosomal protein S23-A 4932
12 4U4Y 25 D3, d3 40S ribosomal protein S23-A 4932
13 4U4N 25 D3, d3 40S ribosomal protein S23-A 4932
14 4U55 25 D3, d3 40S ribosomal protein S23-A 4932
15 5DAT 25 D3, d3 40S ribosomal protein S23-A 4932
16 5I4L 25 D3, d3 40S ribosomal protein S23-A 4932
17 4U51 25 D3, d3 40S ribosomal protein S23-A 4932
18 6HHQ 71 Y, d3 40S ribosomal protein S23-A 4932
19 5OBM 69 D3, d3 40S ribosomal protein S23-A 4932
20 4U53 25 D3, d3 40S ribosomal protein S23-A 4932
21 5ON6 73 Y, d3 40S ribosomal protein S23-A 4932
22 4U50 25 D3, d3 40S ribosomal protein S23-A 4932
23 5NDV 69 D3, d3 40S ribosomal protein S23-A 4932
24 5LYB 25 D3, d3 40S ribosomal protein S23-A 4932
25 4U56 25 D3, d3 40S ribosomal protein S23-A 4932
26 5TGA 25 D3, d3 40S ribosomal protein S23-A 4932
27 5MEI 72 Y, d3 40S ribosomal protein S23-A 4932
28 5FCJ 25 D3, d3 40S ribosomal protein S23-A 4932
29 4U4O 25 D3, d3 40S ribosomal protein S23-A 4932
30 5DGV 25 D3, d3 40S ribosomal protein S23-A 4932
31 5DGE 25 D3, d3 40S ribosomal protein S23-A 4932
32 5NDW 18 D3, d3 40S ribosomal protein S23-A 4932
33 4BTS 22 AL, BL, CL, DL 40S RIBOSOMAL PROTEIN S12 5911
34 5NDG 25 D3, d3 40S ribosomal protein S23-A 4932
35 5FCI 25 D3, d3 40S ribosomal protein S23-A 4932
36 5DC3 25 D3, d3 40S ribosomal protein S23-A 4932
37 5DGF 25 D3, d3 40S ribosomal protein S23-A 4932
38 4V5O 21 AL, BL 40S RIBOSOMAL PROTEIN S12 5911
39 5TGM 25 D3, d3 40S ribosomal protein S23-A 4932
40 4V7R 17 AP, CP 40S ribosomal protein S23 4932
41 5VYC 4 X1, X2, X3, X4, X5, X6 40S ribosomal protein S23 9606
42 4KZZ 24 X 40S Ribosomal Protein S23 9986
43 4KZX 24 X 40S ribosomal protein S23 9986
44 4KZY 24 X 40S Ribosomal Protein S23 9986
45 6YAL 24 Z 40S ribosomal protein uS12 9986
46 6YAM 24 Z 40S ribosomal protein uS12 9986
47 6YAN 23 Z 40S ribosomal protein uS12 9986
48 6W2S 16 Y uS12 9986
49 6W2T 15 Y uS12 9986
50 6Y7C 23 X 40S ribosomal protein S23-A 4932
51 6Y57 72 SX 40S ribosomal protein S23 9606
52 6Y2L 72 SX 40S ribosomal protein S23 9606
53 6Y0G 73 SX 40S ribosomal protein S23 9606
54 6TNU 27 c 40S ribosomal protein S23-A 4932
55 6TMF 15 O 30S ribosomal protein S12 2264
56 6UZ7 71 X RPS23 28985
57 6TB3 27 c 40S ribosomal protein S23-A 4932
58 6T83 25 Xb, y 40S ribosomal protein S23-A 4932
59 6T7T 27 SX 40S ribosomal protein S23-A 4932
60 6T7I 25 SX 40S ribosomal protein S23-A 4932
61 6T4Q 24 SX 40S ribosomal protein S23-A 4932
62 6SW9 15 N 30S ribosomal protein S12 29292
63 6SWC 15 N 30S ribosomal protein S12 29292
64 6SWD 12 N 30S ribosomal protein S12 29292
65 6SV4 42 c, cb, cc 40S ribosomal protein S23-A 4932
66 6SNT 25 X 40S ribosomal protein S23-A 4932
67 6SGC 25 Y1 uS12 9986
68 6S47 69 BY 40S ribosomal protein S23-A 4932
69 6RXT 42 Cn 40S ribosomal protein s23-like protein 209285
70 6RXU 46 Cn 40S ribosomal protein s23-like protein 209285
71 6RXV 46 Cn 40S ribosomal protein s23-like protein 209285
72 6RXX 27 Cn 40S ribosomal protein s23-like protein 209285
73 6RXY 41 Cn 40S ribosomal protein s23-like protein 209285
74 6RXZ 45 Cn 40S ribosomal protein s23-like protein 209285
75 6P5I 25 Y uS12 9986
76 6P5J 25 Y uS12 9986
77 6P5K 71 Y uS12 9986
78 6P5N 71 Y uS12 9986
79 6P4G 25 Y uS12 9986
80 6P4H 26 Y uS12 9986
81 6RM3 71 SX0 uS12 6039
82 6OM7 18 SX 40S ribosomal protein S23 9606
83 6OLZ 70 BX 40S ribosomal protein S23 9606
84 6OM0 18 SX 40S ribosomal protein S23 9606
85 6OLE 18 SX 40S ribosomal protein S23 9606
86 6OLF 18 SX 40S ribosomal protein S23 9606
87 6OLG 73 BX 40S ribosomal protein S23 9606
88 6OLI 18 SX 40S ribosomal protein S23 9606
89 6OKK 17 Q 40S ribosomal protein S23 5833
90 6RBD 16 X 40S ribosomal protein S23-A 4932
91 6RBE 16 X 40S ribosomal protein S23-A 4932
92 6R7Q 84 VV Ribosomal protein S23 9986
93 6R6G 53 VV Ribosomal protein S23 9986
94 6R6P 67 VV Ribosomal protein S23 9986
95 6R5Q 75 VV Ribosomal protein S23 9986
96 6QZP 65 SX 40S ribosomal protein S23 9606
97 6Q8Y 28 c 40S ribosomal protein S23-A 4932
98 6I7O 42 c, cb 40S ribosomal protein S23-A 4932
99 6IP5 64 3B 40S ribosomal protein S23 9606
100 6IP6 63 3B 40S ribosomal protein S23 9606
101 6IP8 63 3B 40S ribosomal protein S23 9606
102 6MTB 74 XX 40S ribosomal protein S23 9986
103 6MTC 73 XX 40S ribosomal protein S23 9986
104 6MTD 75 XX uS12 9986
105 6MTE 74 XX uS12 9986
106 6HCQ 28 Y2 uS12 9986
107 6HCJ 28 Y2 uS12 9986
108 6HCM 25 Y1 uS12 9986
109 6HCF 25 Y1 uS12 9986
110 6GZ3 34 BX Ribosomal protein S23 9986
111 6GZ4 37 BX ribosomal protein uS12 9986
112 6GZ5 34 BX ribosomal protein uS12 9986
113 6GSM 27 X RPS23 28985
114 6GSN 42 X RPS23 28985
115 6GQV 71 AN 40S ribosomal protein S23-A 4932
116 6GQ1 71 AN 40S ribosomal protein S23-A 4932
117 6GQB 71 AN 40S ribosomal protein S23-A 4932
118 6D9J 73 YY uS12 9986
119 6D90 74 YY uS12 9986
120 6G5H 15 X 40S ribosomal protein S23 9606
121 6G5I 25 X 40S ribosomal protein S23 9606
122 6G4S 17 X 40S ribosomal protein S23 9606
123 6G4W 14 X 40S ribosomal protein S23 9606
124 6G51 16 X 40S ribosomal protein S23 9606
125 6G53 16 X 40S ribosomal protein S23 9606
126 6G18 26 X 40S ribosomal protein S23 9606
127 6FYX 27 X KLLA0B11231p 28985
128 6FYY 27 X KLLA0B11231p 28985
129 6FEC 20 Q 40S ribosomal protein S23 9606
130 6FAI 34 X 40S ribosomal protein S23-A 4932
131 6EML 25 c 40S ribosomal protein S23-A 4932
132 6EK0 65 SX 40S ribosomal protein S23 9606
133 6AZ1 16 P ribosomal protein S12 5661
134 5OQL 46 x 40S ribosomal protein s23-like protein 209285
135 5OPT 7 M 40S ribosomal protein S23, putative 5693
136 5WLC 59 SR rpS23_uS12 4932
137 5XYI 25 X 40S ribosomal protein S23, putative 5722
138 5XXU 25 X Ribosomal protein uS12 5811
139 5OA3 28 X 40S ribosomal protein S23 9606
140 5WYJ 48 SY 40S ribosomal protein S23-A 4932
141 5WYK 44 SY 40S ribosomal protein S23-A 4932
142 5TZS 49 r 40S ribosomal protein S23-A 4932
143 5MC6 30 c 40S ribosomal protein S23-A 4932
144 5M1J 31 X2 40S ribosomal protein S23-A 4932
145 5LZS 74 XX uS12 9986
146 5LZT 75 XX uS12 9986
147 5LZU 74 XX uS12 9986
148 5LZV 75 XX uS12 9986
149 5LZW 75 XX uS12 9986
150 5LZX 75 XX uS12 9986
151 5LZY 73 XX uS12 9986
152 5LZZ 75 XX uS12 9986
153 5T2A 74 AS uS12 5661
154 5T2C 49 AD 40S ribosomal protein S23 9606
155 5LL6 15 c 40S ribosomal protein S23-A 4932
156 5LKS 64 SX 40S ribosomal protein S23 9606
157 5K0Y 13 Q ribosomal protein uS12 9986
158 5JUO 73 UB uS12 (yeast S23) 4932
159 5JUP 73 UB uS12 (yeast S23) 4932
160 5JUS 73 UB uS12 (yeast S23) 4932
161 5JUT 73 UB uS12 (yeast S23) 4932
162 5JUU 73 UB uS12 (yeast S23) 4932
163 5JB3 3 N 30S ribosomal protein S12 30S ribosomal protein uS12 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
164 5JBH 15 N 30S ribosomal protein uS12 30S ribosomal protein uS12 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
165 5IT7 71 X RPS23 28985
166 5IT9 24 X Ribosomal protein uS21 28985
167 5FLX 25 X 40S RIBOSOMAL PROTEIN S23 9986
168 3JBN 27 Q 40S ribosomal protein uS12 5833
169 3JBO 3 Q 40S ribosomal protein uS12 5833
170 3JBP 27 Q 40S ribosomal protein uS12 5833
171 3JAP 27 X uS12 28985
172 3JAQ 27 X uS12 28985
173 3JAM 25 X uS12 28985
174 3JAN 67 SX Ribosomal protein uS12 SEE REMARK 999 9986
175 3JAJ 68 SX Ribosomal protein uS12 SEE REMARK 999 9986
176 3JAG 75 XX uS12 9986
177 3JAH 75 XX uS12 9986
178 3JAI 75 XX uS12 9986
179 5A2Q 26 X RIBOSOMAL PROTEIN US12 9606
180 4UG0 65 SX 40S RIBOSOMAL PROTEIN S23 9606
181 5AJ0 73 BX 40S ribosomal protein S23 9606
182 4UER 22 L US12 4934
183 4D61 25 X 40S RIBOSOMAL PROTEIN S23 9986
184 4D5L 25 X 40S RIBOSOMAL PROTEIN US12 9986
185 4V3P 10 SL 40S ribosomal protein S23 4565
186 3J81 25 X uS12 28985
187 3J80 15 X uS12 28985
188 3J7P 73 SX Ribosomal protein uS12 9823
189 3J7R 74 SX Ribosomal protein uS12 9823
190 4UJC 74 CX 40S RIBOSOMAL PROTEIN US12 9986
191 4UJD 74 CX 40S RIBOSOMAL PROTEIN US12 9986
192 3J7A 17 Q 40S ribosomal protein uS12 5833
193 3J77 69 23 40S ribosomal protein S23 4932
194 3J78 69 23 40S ribosomal protein S23 4932
195 3J6X 70 23 40S ribosomal protein S23 4932
196 3J6Y 70 23 40S ribosomal protein S23 4932
197 4CXG 4 X 40S RIBOSOMAL PROTEIN US12 9986
198 4CXH 4 X 40S RIBOSOMAL PROTEIN US12 9986
199 4UJE 28 BX 40S RIBOSOMAL PROTEIN S23 9986
200 4V92 26 BX US12 28985
201 4V7E 9 BX 40S ribosomal protein S12 4565
202 4V8Y 32 AX 40S RIBOSOMAL PROTEIN S23-A 4932
203 4V8Z 32 AX 40S RIBOSOMAL PROTEIN S23-A 4932
204 4V4N 26 BN 30S ribosomal protein S12P SEE REMARK 999 2190
205 4V6W 6 AX 40S ribosomal protein S23 7227
206 4V6X 6 AX 40S ribosomal protein S23 9606
207 4V8M 26 AS 40S RIBOSOMAL PROTEIN S23, PUTATIVE 185431
208 4V6U 12 AN 30S ribosomal protein S12P 2261
209 3J0Q 9 L Ribosomal protein S23 9986
210 3J0P 9 L Ribosomal protein S23 9986
211 3J0O 13 L Ribosomal protein S23 9986
212 3J0L 13 L Ribosomal protein S23 9986
213 4V6I 13 AL 40S ribosomal protein rpS23 (S12p) 4932
214 4V5Z 19 Al 40S Ribosomal protein S23e 9612