4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 410
95 % 2 70 526
90 % 2 76 506
70 % 2 93 458
50 % 2 190 256
40 % 2 194 260
30 % 2 194 275
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 349
95 % 2 80 455
90 % 2 92 424
70 % 2 185 250
50 % 2 200 233
40 % 2 208 233
30 % 2 208 246
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1489
95 % 2 65 621
90 % 2 68 623
70 % 2 84 532
50 % 2 84 562
40 % 2 84 599
30 % 2 84 621
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 362
95 % 2 78 465
90 % 2 90 432
70 % 2 95 448
50 % 2 197 242
40 % 2 197 253
30 % 2 197 266
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1131
95 % 2 51 768
90 % 2 53 766
70 % 2 85 501
50 % 2 85 531
40 % 2 88 556
30 % 2 88 580
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 363
95 % 2 78 468
90 % 2 90 433
70 % 2 194 240
50 % 2 197 243
40 % 2 205 237
30 % 2 206 249
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 351
95 % 2 92 411
90 % 2 92 426
70 % 2 198 224
50 % 2 199 237
40 % 2 199 247
30 % 2 199 260
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 530
95 % 2 68 551
90 % 2 68 575
70 % 2 86 494
50 % 2 179 298
40 % 2 187 286
30 % 2 187 305
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 346
95 % 2 92 410
90 % 2 92 425
70 % 2 92 457
50 % 2 190 251
40 % 2 198 251
30 % 2 199 262
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 415
95 % 2 70 531
90 % 2 82 488
70 % 2 82 515
50 % 2 176 301
40 % 2 176 310
30 % 2 176 331
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 602
95 % 2 51 779
90 % 2 51 811
70 % 2 59 760
50 % 2 68 710
40 % 2 133 402
30 % 2 133 416
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 370
95 % 2 76 476
90 % 2 88 450
70 % 2 183 254
50 % 2 192 248
40 % 2 202 241
30 % 2 202 255
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 372
95 % 2 74 485
90 % 2 74 511
70 % 2 86 486
50 % 2 174 306
40 % 2 174 317
30 % 2 177 324
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 376
95 % 2 74 484
90 % 2 74 510
70 % 2 86 487
50 % 2 86 519
40 % 2 88 535
30 % 2 88 564
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 384
95 % 2 73 502
90 % 2 85 469
70 % 2 85 498
50 % 2 171 316
40 % 2 171 328
30 % 2 171 345
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 352
95 % 2 94 408
90 % 2 94 423
70 % 2 201 232
50 % 3 212 221
40 % 3 214 227
30 % 3 214 238
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 365
95 % 2 90 424
90 % 2 90 440
70 % 2 204 214
50 % 2 214 219
40 % 2 214 228
30 % 2 214 239
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 364
95 % 2 78 473
90 % 2 90 443
70 % 2 95 451
50 % 2 192 263
40 % 2 192 276
30 % 2 192 291
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 590
95 % 2 50 795
90 % 2 50 824
70 % 2 58 769
50 % 2 58 803
40 % 2 58 831
30 % 2 60 846
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 566
95 % 1 47 751
90 % 1 51 756
70 % 1 51 776
50 % 1 85 548
40 % 1 85 583
30 % 1 85 603
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 377
95 % 2 87 435
90 % 2 87 458
70 % 2 175 270
50 % 2 187 264
40 % 2 187 277
30 % 2 187 293
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 381
95 % 2 74 493
90 % 2 84 474
70 % 2 91 463
50 % 2 97 468
40 % 2 161 337
30 % 2 161 355
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 636
95 % 2 90 423
90 % 2 90 442
70 % 2 191 246
50 % 2 202 229
40 % 2 203 240
30 % 2 203 253
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 382
95 % 2 72 498
90 % 2 73 522
70 % 2 168 279
50 % 2 177 302
40 % 2 177 311
30 % 2 177 332
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 371
95 % 2 95 483
90 % 2 107 455
70 % 2 107 482
50 % 2 171 358
40 % 2 171 372
30 % 2 171 387
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 762
95 % 1 43 938
90 % 1 43 967
70 % 1 78 625
50 % 1 82 625
40 % 1 82 660
30 % 1 82 683
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 393
95 % 3 77 449
90 % 3 77 477
70 % 3 77 508
50 % 5 176 278
40 % 5 180 282
30 % 5 183 282
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1040
95 % 1 27 1358
90 % 1 27 1397
70 % 3 33 1225
50 % 3 33 1268
40 % 3 33 1307
30 % 3 33 1344
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 292
95 % 2 97 387
90 % 2 99 394
70 % 2 173 282
50 % 2 186 277
40 % 47 257 201
30 % 47 257 213
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 583
95 % 2 51 784
90 % 2 51 818
70 % 2 59 762
50 % 2 66 731
40 % 2 66 756
30 % 2 66 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 282
95 % 2 103 349
90 % 2 105 355
70 % 2 105 395
50 % 2 197 250
40 % 2 197 262
30 % 2 199 273
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 264
95 % 2 107 330
90 % 2 107 345
70 % 2 109 382
50 % 2 156 345
40 % 2 197 263
30 % 2 197 279
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 311
95 % 2 95 398
90 % 2 95 414
70 % 2 97 437
50 % 2 182 292
40 % 2 184 293
30 % 2 184 316
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 289
95 % 2 102 355
90 % 2 103 367
70 % 2 106 388
50 % 2 107 445
40 % 2 111 456
30 % 2 111 476
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 261
95 % 2 103 348
90 % 2 103 369
70 % 2 105 394
50 % 2 184 284
40 % 2 184 298
30 % 2 183 327
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 106 350
90 % 2 106 368
70 % 2 108 391
50 % 2 168 327
40 % 2 170 336
30 % 2 170 353
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 268
95 % 2 102 354
90 % 2 102 375
70 % 2 104 399
50 % 2 192 268
40 % 2 193 273
30 % 47 265 205
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 341
95 % 2 83 446
90 % 2 85 467
70 % 2 85 496
50 % 2 175 311
40 % 2 175 323
30 % 2 175 341
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1127
95 % 2 98 383
90 % 2 100 388
70 % 3 185 261
50 % 3 189 269
40 % 3 189 283
30 % 3 189 303
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 278
95 % 2 101 370
90 % 2 101 387
70 % 2 103 409
50 % 2 103 463
40 % 2 182 306
30 % 2 182 329
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 385
95 % 3 72 499
90 % 3 72 527
70 % 3 84 497
50 % 3 168 322
40 % 3 168 334
30 % 3 168 349
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 260
95 % 2 103 346
90 % 2 103 366
70 % 2 105 390
50 % 2 105 453
40 % 2 105 481
30 % 2 105 500
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 258
95 % 2 108 327
90 % 2 108 343
70 % 2 182 266
50 % 2 196 255
40 % 2 196 268
30 % 2 196 285
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 302
95 % 2 95 399
90 % 2 102 374
70 % 2 104 398
50 % 2 184 282
40 % 2 185 292
30 % 2 185 312
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 251
95 % 2 106 333
90 % 2 108 341
70 % 2 108 385
50 % 2 194 260
40 % 2 194 271
30 % 2 194 287
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 265
95 % 2 103 352
90 % 2 105 356
70 % 2 105 397
50 % 2 185 293
40 % 2 190 289
30 % 2 190 306
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 287
95 % 2 97 384
90 % 2 97 404
70 % 2 100 414
50 % 2 184 285
40 % 2 185 297
30 % 2 185 321
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 275
95 % 2 101 368
90 % 2 103 372
70 % 2 103 407
50 % 2 175 317
40 % 2 176 321
30 % 2 177 335
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 288
95 % 2 97 386
90 % 2 99 390
70 % 2 99 418
50 % 2 174 320
40 % 2 180 316
30 % 2 187 308
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 460
95 % 2 72 599
90 % 2 72 627
70 % 2 73 647
50 % 2 73 683
40 % 2 73 713
30 % 2 74 716
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 257
95 % 2 104 345
90 % 2 106 349
70 % 2 196 239
50 % 47 267 178
40 % 47 267 191
30 % 47 267 204
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 367
95 % 2 77 477
90 % 2 89 449
70 % 2 181 260
50 % 2 191 252
40 % 2 195 258
30 % 2 204 254
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 482
95 % 2 66 629
90 % 2 66 653
70 % 2 67 686
50 % 2 67 722
40 % 2 114 486
30 % 2 114 509
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 428
95 % 2 77 552
90 % 2 78 573
70 % 2 78 601
50 % 2 78 628
40 % 2 80 649
30 % 2 81 667
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 247
95 % 2 108 324
90 % 2 110 332
70 % 2 110 378
50 % 2 192 266
40 % 2 192 280
30 % 2 192 296
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 296
95 % 2 97 391
90 % 2 99 398
70 % 2 99 433
50 % 2 170 326
40 % 2 183 303
30 % 2 185 319
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 307
95 % 2 98 379
90 % 2 100 385
70 % 2 100 413
50 % 2 187 274
40 % 2 188 285
30 % 2 190 299
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 326
95 % 2 89 429
90 % 2 91 441
70 % 2 91 466
50 % 2 91 505
40 % 2 91 541
30 % 2 91 567
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 255
95 % 3 103 339
90 % 3 105 348
70 % 3 105 386
50 % 3 145 363
40 % 3 145 377
30 % 3 145 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 270
95 % 2 101 363
90 % 2 101 382
70 % 2 103 403
50 % 2 184 283
40 % 2 184 296
30 % 2 184 320
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 259
95 % 2 104 344
90 % 2 104 363
70 % 2 106 389
50 % 2 188 271
40 % 2 192 278
30 % 2 193 290
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 271
95 % 2 102 360
90 % 2 102 379
70 % 2 104 402
50 % 2 180 308
40 % 2 182 312
30 % 2 182 333
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 356
95 % 2 79 459
90 % 2 91 431
70 % 2 91 462
50 % 2 201 232
40 % 2 201 244
30 % 2 201 258
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 295
95 % 2 97 396
90 % 2 97 408
70 % 2 99 432
50 % 2 169 329
40 % 2 169 341
30 % 2 169 360
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 248
95 % 2 107 328
90 % 2 107 344
70 % 2 109 380
50 % 2 187 279
40 % 2 198 261
30 % 2 200 270
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 293
95 % 2 102 364
90 % 2 102 384
70 % 2 104 406
50 % 2 104 459
40 % 2 177 318
30 % 2 177 339
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 256
95 % 2 104 342
90 % 2 104 360
70 % 2 148 307
50 % 2 192 265
40 % 2 192 279
30 % 2 192 295
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 298
95 % 2 97 395
90 % 2 97 409
70 % 2 99 430
50 % 2 99 481
40 % 2 106 469
30 % 2 106 493
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 272
95 % 2 101 358
90 % 2 101 378
70 % 2 176 277
50 % 2 188 273
40 % 2 190 281
30 % 2 191 297
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 545
95 % 1 50 735
90 % 1 50 764
70 % 1 95 471
50 % 1 95 510
40 % 1 95 546
30 % 1 95 571
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 343
95 % 2 81 456
90 % 2 81 484
70 % 2 162 285
50 % 2 162 335
40 % 2 162 348
30 % 2 162 365
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 305
95 % 2 94 406
90 % 2 96 412
70 % 2 173 281
50 % 2 180 300
40 % 2 181 308
30 % 2 181 330
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 306
95 % 2 94 403
90 % 2 94 419
70 % 2 96 441
50 % 2 183 286
40 % 2 184 294
30 % 23 207 257
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 375
95 % 2 77 482
90 % 2 77 509
70 % 2 89 480
50 % 2 182 294
40 % 2 187 288
30 % 2 187 307
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 371
95 % 3 95 483
90 % 3 107 455
70 % 3 107 482
50 % 3 171 358
40 % 3 171 372
30 % 3 171 387
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40701
95 % 1 43 1531
90 % 2 47 1433
70 % 2 48 1435
50 % 2 69 1004
40 % 2 69 1036
30 % 2 69 1079
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 369
95 % 2 76 478
90 % 2 88 456
70 % 2 88 485
50 % 2 188 270
40 % 2 188 284
30 % 2 191 283

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 30 Ac, Cc 40S ribosomal protein S28-A 4932
2 4U4R 30 D8, d8 40S ribosomal protein S28-A 4932
3 4U3U 30 D8, d8 40S ribosomal protein S28-A 4932
4 5TBW 77 d, d8 40S ribosomal protein S28-A 4932
5 4U3M 30 D8, d8 40S ribosomal protein S28-A 4932
6 4U3N 30 D8, d8 40S ribosomal protein S28-A 4932
7 4U52 30 D8, d8 40S ribosomal protein S28-A 4932
8 4U4Q 30 D8, d8 40S ribosomal protein S28-A 4932
9 4U6F 30 D8, d8 40S ribosomal protein S28-A 4932
10 4U4U 30 D8, d8 40S ribosomal protein S28-A 4932
11 4U4Z 30 D8, d8 40S ribosomal protein S28-A 4932
12 4U4Y 30 D8, d8 40S ribosomal protein S28-A 4932
13 4U4N 30 D8, d8 40S ribosomal protein S28-A 4932
14 4U55 30 D8, d8 40S ribosomal protein S28-A 4932
15 5DAT 30 D8, d8 40S ribosomal protein S28-A 4932
16 5I4L 30 D8, d8 40S ribosomal protein S28-A 4932
17 4U51 30 D8, d8 40S ribosomal protein S28-A 4932
18 6HHQ 76 d, d8 40S ribosomal protein S28-A 4932
19 5OBM 74 D8, d8 40S ribosomal protein S28-A 4932
20 4U53 30 D8, d8 40S ribosomal protein S28-A 4932
21 5ON6 78 d, d8 40S ribosomal protein S28-A 4932
22 4U50 30 D8, d8 40S ribosomal protein S28-A 4932
23 5NDV 74 D8, d8 40S ribosomal protein S28-A 4932
24 5LYB 30 D8, d8 40S ribosomal protein S28-A 4932
25 4U56 30 D8, d8 40S ribosomal protein S28-A 4932
26 5TGA 30 D8, d8 40S ribosomal protein S28-A 4932
27 5MEI 77 d, d8 40S ribosomal protein S28-A 4932
28 5FCJ 30 D8, d8 40S ribosomal protein S28-A 4932
29 4U4O 30 D8, d8 40S ribosomal protein S28-A 4932
30 5DGV 30 D8, d8 40S ribosomal protein S28-A 4932
31 5DGE 30 D8, d8 40S ribosomal protein S28-A 4932
32 5NDW 23 D8, d8 40S ribosomal protein S28-A 4932
33 4BTS 2 A1, B1, C1, D1 40S RIBOSOMAL PROTEIN RPS28E 5911
34 5NDG 30 D8, d8 40S ribosomal protein S28-A 4932
35 5FCI 30 D8, d8 40S ribosomal protein S28-A 4932
36 5DC3 30 D8, d8 40S ribosomal protein S28-A 4932
37 5DGF 30 D8, d8 40S ribosomal protein S28-A 4932
38 4V5O 1 A1, B1 RIBOSOMAL PROTEIN S28E CONTAINING PROTEIN 5911
39 5TGM 30 D8, d8 40S ribosomal protein S28-A 4932
40 4V7R 19 AR, CR 40S ribosomal protein S28-A 4932
41 5VYC 6 c1, c2, c3, c4, c5, c6 40S ribosomal protein S28 9606
42 4KZZ 29 c 40S Ribosomal Protein S28 9986
43 4KZX 29 c 40S ribosomal protein S28 9986
44 4KZY 29 c 40S Ribosomal Protein S28 9986
45 6YAL 28 d 40S ribosomal protein eS28 9986
46 6YAM 28 d 40S ribosomal protein eS28 9986
47 6YAN 27 d ribosomal protein eS28 9986
48 6W2S 32 d eS28 9986
49 6W2T 31 d eS28 9986
50 6Y7C 27 c 40S ribosomal protein S28-A 4932
51 6Y57 77 Sc 40S ribosomal protein S28 9606
52 6Y2L 77 Sc 40S ribosomal protein S28 9606
53 6Y0G 78 Sc 40S ribosomal protein S28 9606
54 6TNU 36 L 40S ribosomal protein S28-A 4932
55 6TMF 27 a 30S ribosomal protein S28e 2264
56 6UZ7 76 c 40S ribosomal protein S28 28985
57 6TB3 36 L 40S ribosomal protein S28-A 4932
58 6T83 34 3, cb 40S ribosomal protein S28-B 4932
59 6T7T 36 Sc 40S ribosomal protein S28-A 4932
60 6T7I 34 Sc 40S ribosomal protein S28-B 4932
61 6T4Q 33 Sc 40S ribosomal protein S28-A 4932
62 6SW9 25 X 30S ribosomal protein S28e 29292
63 6SWC 25 X 30S ribosomal protein S28e 29292
64 6SWE 10 X 30S ribosomal protein S28e 29292
65 6SV4 47 L, Lb, Lc 40S ribosomal protein S28-B 4932
66 6SNT 34 c 40S ribosomal protein S28-B 4932
67 6SGC 30 d1 Ribosomal protein S28 9986
68 6S47 74 Bd 40S ribosomal protein S28-A 4932
69 6RXT 43 Cp 40S ribosomal protein S28-like protein 209285
70 6RXU 48 Cp 40S ribosomal protein S28-like protein 209285
71 6RXV 48 Cp 40S ribosomal protein S28-like protein 209285
72 6RXX 28 Cp 40S ribosomal protein S28-like protein 209285
73 6RXY 42 Cp 40S ribosomal protein S28-like protein 209285
74 6RXZ 47 Cp 40S ribosomal protein S28-like protein 209285
75 6P5I 30 d eS28 9986
76 6P5J 30 d eS28 9986
77 6P5K 76 d eS28 9986
78 6P5N 76 d eS28 9986
79 6P4G 30 d eS28 9986
80 6P4H 31 d eS28 9986
81 6RM3 14 SCC eS28 6039
82 6OM7 20 Sc 40S ribosomal protein S28 9606
83 6OLZ 75 Bc 40S ribosomal protein S28 9606
84 6OM0 20 Sc 40S ribosomal protein S28 9606
85 6OLE 20 Sc 40S ribosomal protein S28 9606
86 6OLF 20 Sc 40S ribosomal protein S28 9606
87 6OLG 78 Bc 40S ribosomal protein S28 9606
88 6OLI 20 Sc 40S ribosomal protein S28 9606
89 6OKK 31 e 40S ribosomal protein S28e 5833
90 6RBD 18 c 40S ribosomal protein S28-A 4932
91 6RBE 31 c 40S ribosomal protein S28-A 4932
92 6R7Q 6 FF Ribosomal protein S28 9986
93 6R6G 21 FF Ribosomal protein S28 9986
94 6R6P 81 FF Ribosomal protein S28 9986
95 6R5Q 80 FF Ribosomal protein S28 9986
96 6QZP 67 Sc 40S ribosomal protein S28 9606
97 6Q8Y 67 L 40S ribosomal protein S28-A 4932
98 6I7O 47 L, Lb 40S ribosomal protein S28-A 4932
99 6IP5 66 3D 40S ribosomal protein S28 9606
100 6IP6 65 3D 40S ribosomal protein S28 9606
101 6IP8 65 3D 40S ribosomal protein S28 9606
102 6MTB 79 cc 40S ribosomal protein S28 9986
103 6MTC 78 cc 40S ribosomal protein S28 9986
104 6MTD 80 cc eS28 9986
105 6MTE 79 cc eS28 9986
106 6HCQ 33 d2 Ribosomal protein S28 9986
107 6HCJ 33 d2 Ribosomal protein S28 9986
108 6HCM 30 d1 Ribosomal protein S28 9986
109 6HCF 30 d1 Ribosomal protein S28 9986
110 6GZ3 17 Bc Ribosomal protein S28 9986
111 6GZ4 23 Bc ribosomal protein eS28 9986
112 6GZ5 17 Bc ribosomal protein eS28 9986
113 6GSM 32 c 40S ribosomal protein S28 28985
114 6GSN 14 c 40S ribosomal protein S28 28985
115 6GQV 76 AS 40S ribosomal protein S28-A 4932
116 6GQ1 76 AS 40S ribosomal protein S28-A 4932
117 6GQB 76 AS 40S ribosomal protein S28-A 4932
118 6D9J 78 dd eS28 9986
119 6D90 79 dd eS28 9986
120 6G5H 33 c 40S ribosomal protein S28 9606
121 6G5I 29 c 40S ribosomal protein S28 9606
122 6G4S 7 c 40S ribosomal protein S28 9606
123 6G4W 5 c 40S ribosomal protein S28 9606
124 6G51 36 c 40S ribosomal protein S28 9606
125 6G53 35 c 40S ribosomal protein S28 9606
126 6G18 10 c 40S ribosomal protein S28 9606
127 6FYX 32 c 40S ribosomal protein S28 28985
128 6FYY 32 c 40S ribosomal protein S28 28985
129 6FEC 40 l 40S ribosomal protein S28 9606
130 6FAI 2 c 40S ribosomal protein S28-A 4932
131 6EML 10 L 40S ribosomal protein S28-B 4932
132 6EK0 67 Sc 40S ribosomal protein S28 9606
133 5OQL 48 z 40S ribosomal protein S28-like protein 209285
134 5WLC 15 LG rpS28_eS28 4932
135 5XYI 30 c Uncharacterized protein 5722
136 5XXU 30 c Ribosomal protein eS28 5811
137 5OA3 33 c 40S ribosomal protein S28 9606
138 5WYJ 51 Sd 40S ribosomal protein S28-A 4932
139 5WYK 47 Sd 40S ribosomal protein S28-A 4932
140 5TZS 16 G rpS28_eS28 4932
141 5MC6 13 L 40S ribosomal protein S28-B 4932
142 5M1J 7 c2 40S ribosomal protein S28-B 4932
143 5LZS 79 cc eS28 9986
144 5LZT 80 cc eS28 9986
145 5LZU 79 cc eS28 9986
146 5LZV 80 cc eS28 9986
147 5LZW 80 cc eS28 9986
148 5LZX 80 cc eS28 9986
149 5LZY 78 cc eS28 9986
150 5LZZ 80 cc eS28 9986
151 5T2C 51 AF 40S ribosomal protein S28 9606
152 5LKS 66 Sc 40S ribosomal protein S28 9606
153 5K0Y 34 l ribosomal protein eS28 9986
154 5JUO 78 ZB eS28 (yeast S28) 4932
155 5JUP 78 ZB eS28 (yeast S28) 4932
156 5JUS 78 ZB eS28 (yeast S28) 4932
157 5JUT 78 ZB eS28 (yeast S28) 4932
158 5JUU 78 ZB eS28 (yeast S28) 4932
159 5JPQ 34 1 eS28 209285
160 5JB3 25 X 30S ribosomal protein S28e 30S ribosomal protein eS28 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
161 5JBH 10 X 30S ribosomal protein eS28 30S ribosomal protein eS28 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
162 5IT7 76 c 40S ribosomal protein S28 28985
163 5IT9 29 c Ribosomal protein eS28 28985
164 5FLX 30 c 40S RIBOSOMAL PROTEIN S28 9986
165 3JBN 18 5 40S ribosomal protein eS28 5833
166 3JBO 23 5 40S ribosomal protein eS28 5833
167 3JBP 18 5 40S ribosomal protein eS28 5833
168 3JAP 32 c eS28 28985
169 3JAQ 32 c eS28 28985
170 3JAM 30 c eS28 28985
171 3JAN 83 Sc Ribosomal protein eS28 SEE REMARK 999 9986
172 3JAJ 84 Sc Ribosomal protein eS28 SEE REMARK 999 9986
173 3JAG 80 cc eS28 9986
174 3JAH 80 cc eS28 9986
175 3JAI 80 cc eS28 9986
176 5A2Q 31 c RIBOSOMAL PROTEIN ES28 9606
177 4UG0 67 Sc 40S RIBOSOMAL PROTEIN S28 9606
178 5AJ0 78 Bc 40S ribosomal protein S28 9606
179 4UER 2 1 ES28 4934
180 4D61 30 c 40S RIBOSOMAL PROTEIN S28 9986
181 4D5L 30 c 40S RIBOSOMAL PROTEIN US5 9986
182 3J81 30 c eS28 28985
183 3J80 31 c eS28 28985
184 3J7P 78 Sc Ribosomal protein eS28 9823
185 3J7R 79 Sc Ribosomal protein eS28 9823
186 4UJC 79 Cc 40S RIBOSOMAL PROTEIN ES28 9986
187 4UJD 79 Cc 40S RIBOSOMAL PROTEIN ES28 9986
188 3J7A 31 5 40S ribosomal protein eS28 5833
189 3J77 74 28 40S ribosomal protein S28 4932
190 3J78 74 28 40S ribosomal protein S28 4932
191 3J6X 75 28 40S ribosomal protein S28 4932
192 3J6Y 75 28 40S ribosomal protein S28 4932
193 4UJE 33 Bc 40S RIBOSOMAL PROTEIN S28 9986
194 4V92 31 Bc ES28 28985
195 4V7E 23 Bc 40S ribosomal protein S28E 4565
196 4V8Y 3 A2 40S RIBOSOMAL PROTEIN S28-A 4932
197 4V8Z 3 A2 40S RIBOSOMAL PROTEIN S28-A 4932
198 4V4N 36 BX 30S ribosomal protein S28E SEE REMARK 999 2190
199 4V6W 22 Ac 40S ribosomal protein S28 7227
200 4V6X 22 Ac 40S ribosomal protein S28 9606
201 4V6U 13 AX 30S ribosomal protein S28e 2261
202 4V6I 25 AY 40S ribosomal protein rpS28 (S28e) 4932
203 1NE3 1 A 30S ribosomal protein S28E 2186