4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 234 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 89 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 107 384
70 % 2 115 396
50 % 2 226 232
40 % 2 228 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 108 383
70 % 2 229 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 128 351
90 % 2 110 371
70 % 2 233 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 111 352
90 % 2 111 365
70 % 2 112 412
50 % 2 228 234
40 % 2 239 227
30 % 2 238 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 204 276
40 % 2 205 283
30 % 2 204 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 100 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 209 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 79 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 112 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 110 378
70 % 2 247 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 113 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 63 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 84 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 104 388
90 % 2 103 411
70 % 2 207 244
50 % 2 219 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 355
95 % 2 93 444
90 % 2 103 426
70 % 2 108 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 109 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 190 266
50 % 2 200 286
40 % 2 200 295
30 % 2 205 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 11 487
50 % 2 191 337
40 % 2 191 351
30 % 2 189 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 197 268
40 % 5 203 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 207 267
40 % 47 275 196
30 % 47 271 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 595
95 % 2 85 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 112 345
90 % 2 115 352
70 % 2 114 395
50 % 2 220 251
40 % 2 220 253
30 % 2 221 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 273
95 % 2 116 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 218 254
30 % 2 219 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 200 283
40 % 2 204 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 160 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 112 363
70 % 2 117 394
50 % 2 206 273
40 % 2 207 279
30 % 2 198 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 111 348
90 % 2 128 368
70 % 2 114 403
50 % 2 215 263
40 % 2 215 260
30 % 2 216 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 96 488
50 % 2 190 304
40 % 2 192 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 104 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 212 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 286
95 % 2 111 366
90 % 2 108 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 200 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 276
95 % 2 115 342
90 % 2 113 364
70 % 2 114 398
50 % 2 114 453
40 % 2 131 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 117 325
90 % 2 118 345
70 % 2 205 255
50 % 2 216 253
40 % 2 219 255
30 % 2 215 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 111 369
70 % 2 114 402
50 % 2 207 270
40 % 2 207 275
30 % 2 206 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 52 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 215 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 274
95 % 2 112 346
90 % 2 115 355
70 % 2 131 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 106 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 206 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 127 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 231 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 197 301
30 % 2 209 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 105 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 240 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 26 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 82 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 214 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 298
95 % 2 107 383
90 % 2 106 398
70 % 2 109 431
50 % 2 192 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 209 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 95 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 130 267
95 % 3 112 337
90 % 3 52 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 280
95 % 2 111 353
90 % 2 111 375
70 % 2 112 409
50 % 2 206 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 115 389
50 % 2 204 264
40 % 2 215 261
30 % 2 214 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 283
95 % 2 110 360
90 % 2 112 381
70 % 2 114 411
50 % 2 230 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 197 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 106 433
50 % 2 192 307
40 % 2 192 318
30 % 2 191 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 295
95 % 2 111 358
90 % 2 112 373
70 % 2 112 407
50 % 2 114 461
40 % 2 195 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 113 336
90 % 2 112 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 297
95 % 2 107 381
90 % 2 103 408
70 % 2 108 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 214 255
40 % 2 216 259
30 % 2 210 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 91 484
50 % 1 97 524
40 % 1 96 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 98 417
90 % 2 101 431
70 % 2 194 269
50 % 2 202 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 91 436
90 % 2 97 454
70 % 2 109 435
50 % 2 215 252
40 % 2 219 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 11 487
50 % 3 191 337
40 % 3 191 351
30 % 3 189 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 340
95 % 2 96 437
90 % 2 108 406
70 % 2 104 436
50 % 2 224 243
40 % 2 224 245
30 % 2 226 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3FRX 1 A, B, C, D Guanine nucleotide-binding protein subunit beta-like protein 4932
2 4D6V 1 A G PROTEIN BETA SUBUNIT GIB2 5207
3 4AOW 1 A, B, C GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1 9606
4 4V88 34 Ag, Cg Guanine nucleotide-binding protein subunit beta-like protein (ASC1, RACK1) 4932
5 4U4R 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
6 4U3U 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
7 5TBW 81 Rb, h Guanine nucleotide-binding protein subunit beta-like protein 4932
8 4U3M 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
9 4U3N 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
10 3RFH 1 A, B, C, D Guanine nucleotide-binding protein subunit beta-like protein 4932
11 4U52 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
12 4U4Q 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
13 4U6F 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
14 4U4U 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
15 4U4Z 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
16 4U4Y 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
17 4U4N 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
18 4U55 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
19 5DAT 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
20 5I4L 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
21 4U51 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
22 6HHQ 80 Rb, h Guanine nucleotide-binding protein subunit beta-like protein 4932
23 5OBM 78 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
24 4U53 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
25 5ON6 82 h, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
26 4U50 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
27 5NDV 77 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
28 5LYB 34 SR Guanine nucleotide-binding protein subunit beta-like protein 4932
29 5LYB 83 sR Guanine nucleotide-binding protein subunit beta-like protein 4932
30 4U56 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
31 5TGA 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
32 5MEI 81 h, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
33 5FCJ 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
34 4U4O 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
35 5DGV 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
36 5DGE 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
37 5NDW 79 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
38 5NDG 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
39 5FCI 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
40 5DC3 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
41 5DGF 34 SR, sR Guanine nucleotide-binding protein subunit beta-like protein 4932
42 3RFG 1 A, B Guanine nucleotide-binding protein subunit beta-like protein 4932
43 5TGM 34 SR Guanine nucleotide-binding protein subunit beta-like protein 4932
44 5TGM 83 sR Guanine nucleotide-binding protein subunit beta-like protein 4932
45 4V7R 21 AT, CT Guanine nucleotide-binding protein subunit beta-like protein; RACK-1 4932
46 5VYC 9 g1, g2, g3, g4, g5, g6 Receptor of activated protein C kinase 1 9606
47 4KZZ 33 g 40S Ribosomal Protein RACK1 9986
48 4KZX 33 g 40S ribosomal protein RACK1 9986
49 4KZY 33 g 40S Ribosomal Protein RACK1 9986
50 6ZVH 22 g Receptor of activated protein C kinase 1 9606
51 6ZVI 34 R Guanine nucleotide-binding protein subunit beta-like protein 4932
52 6ZP4 33 V Receptor of activated protein C kinase 1 9606
53 6ZOJ 34 g Receptor of activated protein C kinase 1 9606
54 6ZOL 16 g Receptor of activated protein C kinase 1 9606
55 6ZON 35 V Receptor of activated protein C kinase 1 9606
56 6ZN5 33 j Receptor of activated protein C kinase 1 9606
57 6ZMW 39 c Receptor of activated protein C kinase 1 9606
58 6ZMO 70 Sg Receptor of activated protein C kinase 1 9606
59 6ZMT 32 j Receptor of activated protein C kinase 1 9606
60 6ZME 70 Sg Receptor of activated protein C kinase 1 9606
61 6ZMI 70 Sg Receptor of activated protein C kinase 1 9606
62 6ZLW 34 j Receptor of activated protein C kinase 1 9606
63 6ZM7 70 Sg Receptor of activated protein C kinase 1 9606
64 6XIQ 78 AV Guanine nucleotide-binding protein subunit beta-like protein 4932
65 6XIR 74 AV Guanine nucleotide-binding protein subunit beta-like protein 4932
66 6Z6J 38 Sg Guanine nucleotide-binding protein subunit beta-like protein 4932
67 6Z6K 38 Sg Guanine nucleotide-binding protein subunit beta-like protein 4932
68 6Z6L 68 Sg Receptor of activated protein C kinase 1 9606
69 6Z6M 68 Sg Receptor of activated protein C kinase 1 9606
70 6Z6N 68 Sg Receptor of activated protein C kinase 1 9606
71 6WOO 80 gg RACK1 4932
72 6YBS 2 c Receptor of activated protein C kinase 1 9606
73 6YAL 31 g ribosomal protein RACK1 9986
74 6YAM 31 g ribosomal protein RACK1 9986
75 6YAN 30 g ribosomal protein RACK1 9986
76 6W2S 35 h RACK1 9986
77 6W2T 34 h RACK1 9986
78 6Y57 81 Sg Receptor of activated protein C kinase 1 9606
79 6Y2L 80 Sg Receptor of activated protein C kinase 1 9606
80 6Y0G 82 Sg Receptor of activated protein C kinase 1 9606
81 6TNU 35 O Guanine nucleotide-binding protein subunit beta-like protein 4932
82 6UZ7 80 g KLLA0E12277p 28985
83 6TB3 35 O Guanine nucleotide-binding protein subunit beta-like protein 4932
84 6T83 33 7, gb Guanine nucleotide-binding protein subunit beta-like protein 4932
85 6T7T 35 Sg Guanine nucleotide-binding protein subunit beta-like protein 4932
86 6T7I 33 Sg Guanine nucleotide-binding protein subunit beta-like protein 4932
87 6T4Q 32 Sg Guanine nucleotide-binding protein subunit beta-like protein 4932
88 6SV4 51 O, Ob, Oc Guanine nucleotide-binding protein subunit beta-like protein 4932
89 6SNT 33 g Guanine nucleotide-binding protein subunit beta-like protein 4932
90 6SGC 34 h1 WD_REPEATS_REGION domain-containing protein 9986
91 6S47 78 Bh Guanine nucleotide-binding protein subunit beta-like protein 4932
92 6P5I 34 h RACK1 9986
93 6P5J 34 h RACK1 9986
94 6P5K 80 h RACK1 9986
95 6P5N 80 h RACK1 9986
96 6P4G 34 h RACK1 9986
97 6P4H 35 h RACK1 9986
98 6OM7 22 Sg Receptor of activated protein C kinase 1 9606
99 6OLZ 79 Bg Receptor of activated protein C kinase 1 9606
100 6OM0 22 Sg Receptor of activated protein C kinase 1 9606
101 6OLE 22 Sg Receptor of activated protein C kinase 1 9606
102 6OLF 22 Sg Receptor of activated protein C kinase 1 9606
103 6OLG 82 Bg Receptor of activated protein C kinase 1 9606
104 6OLI 22 Sg Receptor of activated protein C kinase 1 9606
105 6RBE 33 g Guanine nucleotide-binding protein subunit beta-like protein 4932
106 6R7Q 20 6 ribosomal protein RACK1 9986
107 6R6G 7 6 ribosomal protein RACK1 9986
108 6R6P 84 6 ribosomal protein RACK1 9986
109 6R5Q 84 6 ribosomal protein RACK1 9986
110 6QZP 69 Sg Receptor of activated protein C kinase 1 9606
111 6Q8Y 70 O Guanine nucleotide-binding protein subunit beta-like protein 4932
112 6I7O 51 O, Ob Guanine nucleotide-binding protein subunit beta-like protein 4932
113 6IP5 68 3F Receptor of activated protein C kinase 1 9606
114 6IP6 67 3F Receptor of activated protein C kinase 1 9606
115 6IP8 67 3F Receptor of activated protein C kinase 1 9606
116 6MTB 83 gg Receptor of activated protein C kinase 1 9986
117 6MTC 82 gg Receptor of activated protein C kinase 1 9986
118 6MTD 84 gg RACK1 9986
119 6MTE 83 gg RACK1 9986
120 6HCQ 37 h2 RACK1 9986
121 6HCJ 37 h2 RACK1 9986
122 6HCM 34 h1 RACK1 9986
123 6HCF 34 h1 RACK1 9986
124 6GZ3 20 Bg ribosomal protein RACK 1 9986
125 6GZ4 26 Bg ribosomal protein RACK 1 9986
126 6GZ5 20 Bg ribosomal protein RACK 1 9986
127 6GSM 36 g KLLA0E12277p 28985
128 6GSN 16 g KLLA0E12277p 28985
129 6GQV 79 AV Guanine nucleotide-binding protein subunit beta-like protein 4932
130 6GQ1 79 AV Guanine nucleotide-binding protein subunit beta-like protein 4932
131 6GQB 79 AV Guanine nucleotide-binding protein subunit beta-like protein 4932
132 6D9J 82 hh RACK1 9986
133 6D90 83 hh RACK1 9986
134 6G5H 35 g Receptor of activated protein C kinase 1 9606
135 6G5I 33 g Receptor of activated protein C kinase 1 9606
136 6G51 38 g Receptor of activated protein C kinase 1 9606
137 6G53 37 g Receptor of activated protein C kinase 1 9606
138 6G18 12 g Receptor of activated protein C kinase 1 9606
139 6FYX 36 g KLLA0E12277p 28985
140 6FYY 36 g KLLA0E12277p 28985
141 6FEC 41 m Receptor of activated protein C kinase 1 9606
142 6FAI 5 g Guanine nucleotide-binding protein subunit beta-like protein 4932
143 6EK0 69 Sg Receptor of activated protein C kinase 1 9606
144 5OA3 37 g Receptor of activated protein C kinase 1 9606
145 5MC6 16 O Guanine nucleotide-binding protein subunit beta-like protein 4932
146 5M1J 14 g2 Guanine nucleotide-binding protein subunit beta-like protein 4932
147 5LZS 83 gg RACK1 9986
148 5LZT 84 gg RACK1 9986
149 5LZU 83 gg RACK1 9986
150 5LZV 84 gg RACK1 9986
151 5LZW 84 gg RACK1 9986
152 5LZX 84 gg RACK1 9986
153 5LZY 82 gg RACK1 9986
154 5LZZ 84 gg RACK1 9986
155 5T2C 78 AI Receptor of activated protein C kinase 1 9606
156 5LKS 68 Sg Receptor of activated protein C kinase 1 9606
157 5K0Y 35 m ribosomal protein RACK1 9986
158 5JUO 49 WA RACK1 (yeast Asc1) 4932
159 5JUP 49 WA RACK1 (yeast Asc1) 4932
160 5JUS 49 WA RACK1 (yeast Asc1) 4932
161 5JUT 49 WA RACK1 (yeast Asc1) 4932
162 5JUU 49 WA RACK1 (yeast Asc1) 4932
163 5IT7 80 g KLLA0E12277p 28985
164 5IT9 33 g Ribosomal protein RACK1 28985
165 5FLX 34 g GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1 9986
166 3JAP 36 g RACK1 28985
167 3JAQ 36 g RACK1 28985
168 3JAM 34 g RACK1 28985
169 3JAN 86 Sg Ribosomal protein RACK1 SEE REMARK 999 9986
170 3JAJ 87 Sg Ribosomal protein RACK1 SEE REMARK 999 9986
171 3JAG 84 gg RACK1 9986
172 3JAH 84 gg RACK1 9986
173 3JAI 84 gg RACK1 9986
174 5A2Q 35 g RIBOSOMAL PROTEIN RACK1 9606
175 4UG0 70 Sg GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1 9606
176 5AJ0 82 Bg Guanine nucleotide-binding protein subunit beta-2-like 1 9606
177 4UER 28 R RACK1 4934
178 4D61 34 g GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1 9986
179 4D5L 34 g 40S RIBOSOMAL PROTEIN ES6 9986
180 3J81 32 g RACK1 28985
181 3J80 34 g RACK1 28985
182 3J7P 82 Sg Ribosomal protein RACK1 9823
183 3J7R 83 Sg Ribosomal protein RACK1 9823
184 4UJC 83 Cg 40S RIBOSOMAL PROTEIN RACK1 9986
185 4UJD 83 Cg 40S RIBOSOMAL PROTEIN RACK1 9986
186 3J77 45 RC Guanine nucleotide-binding protein subunit beta-like protein 4932
187 3J78 45 RC Guanine nucleotide-binding protein subunit beta-like protein 4932
188 3J6X 79 RA Guanine nucleotide-binding protein subunit beta-like protein 4932
189 3J6Y 79 RA Guanine nucleotide-binding protein subunit beta-like protein 4932
190 4UJE 37 Bg GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1 9986
191 4V92 35 Bg RACK1 28985
192 4V8Y 7 A6 GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 4932
193 4V8Z 7 A6 GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 4932
194 4V6W 2 Ag Guanine nucleotide-binding protein subunit beta-like protein 7227
195 4V6X 2 Ag Guanine nucleotide-binding protein subunit beta-2-like 1 9606
196 4V6I 1 Aa 40S ribosomal protein RACK1 (RACK1) 4932
197 4V7H 17 AR RACK1 protein 5541
198 4V5Z 9 Aa 40S Ribosomal protein RACK1 9612
199 1TRJ 3 A Guanine nucleotide-binding protein beta subunit-like protein 4932