4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 234 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 89 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 107 384
70 % 2 115 396
50 % 2 226 232
40 % 2 228 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 108 383
70 % 2 229 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 128 351
90 % 2 110 371
70 % 2 233 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 111 352
90 % 2 111 365
70 % 2 112 412
50 % 2 228 234
40 % 2 239 227
30 % 2 238 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 204 276
40 % 2 205 283
30 % 2 204 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 100 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 209 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 79 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 112 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 110 378
70 % 2 247 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 113 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 63 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 84 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 104 388
90 % 2 103 411
70 % 2 207 244
50 % 2 219 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 355
95 % 2 93 444
90 % 2 103 426
70 % 2 108 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 109 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 190 266
50 % 2 200 286
40 % 2 200 295
30 % 2 205 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 11 487
50 % 2 191 337
40 % 2 191 351
30 % 2 189 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 197 268
40 % 5 203 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 207 267
40 % 47 275 196
30 % 47 271 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 595
95 % 2 85 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 112 345
90 % 2 115 352
70 % 2 114 395
50 % 2 220 251
40 % 2 220 253
30 % 2 221 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 273
95 % 2 116 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 218 254
30 % 2 219 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 200 283
40 % 2 204 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 160 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 112 363
70 % 2 117 394
50 % 2 206 273
40 % 2 207 279
30 % 2 198 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 111 348
90 % 2 128 368
70 % 2 114 403
50 % 2 215 263
40 % 2 215 260
30 % 2 216 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 96 488
50 % 2 190 304
40 % 2 192 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 104 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 212 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 286
95 % 2 111 366
90 % 2 108 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 200 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 276
95 % 2 115 342
90 % 2 113 364
70 % 2 114 398
50 % 2 114 453
40 % 2 131 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 117 325
90 % 2 118 345
70 % 2 205 255
50 % 2 216 253
40 % 2 219 255
30 % 2 215 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 111 369
70 % 2 114 402
50 % 2 207 270
40 % 2 207 275
30 % 2 206 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 52 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 215 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 274
95 % 2 112 346
90 % 2 115 355
70 % 2 131 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 106 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 206 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 127 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 231 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 197 301
30 % 2 209 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 105 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 240 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 26 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 82 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 214 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 298
95 % 2 107 383
90 % 2 106 398
70 % 2 109 431
50 % 2 192 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 209 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 95 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 130 267
95 % 3 112 337
90 % 3 52 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 280
95 % 2 111 353
90 % 2 111 375
70 % 2 112 409
50 % 2 206 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 115 389
50 % 2 204 264
40 % 2 215 261
30 % 2 214 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 283
95 % 2 110 360
90 % 2 112 381
70 % 2 114 411
50 % 2 230 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 197 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 106 433
50 % 2 192 307
40 % 2 192 318
30 % 2 191 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 295
95 % 2 111 358
90 % 2 112 373
70 % 2 112 407
50 % 2 114 461
40 % 2 195 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 113 336
90 % 2 112 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 297
95 % 2 107 381
90 % 2 103 408
70 % 2 108 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 214 255
40 % 2 216 259
30 % 2 210 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 91 484
50 % 1 97 524
40 % 1 96 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 98 417
90 % 2 101 431
70 % 2 194 269
50 % 2 202 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 91 436
90 % 2 97 454
70 % 2 109 435
50 % 2 215 252
40 % 2 219 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 11 487
50 % 3 191 337
40 % 3 191 351
30 % 3 189 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 340
95 % 2 96 437
90 % 2 108 406
70 % 2 104 436
50 % 2 224 243
40 % 2 224 245
30 % 2 226 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DFU 3 P RIBOSOMAL PROTEIN L25 PROTEIN FROM THE LARGE RIBOSOMAL SUBUNIT 562
2 4YBB 43 CW, DW 50S ribosomal protein L25 562
3 5IZN 1 A, B, C, D, E, F, G, H 50S ribosomal protein L25 672
4 5J7L 49 CW, DW 50S ribosomal protein L25 562
5 4WOI 46 BV, CV 50S ribosomal protein L25 562
6 6I7V 46 CW, DW 50S ribosomal protein L25 562
7 5JC9 50 CW, DW 50S ribosomal protein L25 562
8 5J8A 50 CW, DW 50S ribosomal protein L25 562
9 5J5B 49 CW, DW 50S ribosomal protein L25 562
10 4U27 43 BV, DV 50S ribosomal protein L25 562
11 4U26 43 BV, DV 50S ribosomal protein L25 562
12 5IT8 51 CW, DW 50S ribosomal protein L25 562
13 4V9D 46 CV, DV 50S ribosomal protein L25 562
14 4V9P 22 AV, CV, EV, GV 50S ribosomal protein L25 562
15 5J91 50 CW, DW 50S ribosomal protein L25 562
16 5J88 50 CW, DW 50S ribosomal protein L25 562
17 4U24 43 BV, DV 50S ribosomal protein L25 562
18 4V9O 22 AV, CV, EV, GV 50S ribosomal protein L25 562
19 4WF1 43 BV, DV 50S ribosomal protein L25 562
20 4U25 43 BV, DV 50S ribosomal protein L25 562
21 4WWW 22 RV, YV 50S ribosomal protein L25 562
22 4V7T 43 BV, DV 50S ribosomal protein L25 562
23 4V7U 43 BV, DV 50S ribosomal protein L25 562
24 4V6C 43 BV, DV 50S ribosomal protein L25 562
25 4V7V 43 BV, DV 50S ribosomal protein L25 562
26 4V7S 43 BV, DV 50S ribosomal protein L25 562
27 6LKQ 39 d 50S ribosomal protein L25 562
28 4U20 43 BV, DV 50S ribosomal protein L25 562
29 4U1V 43 BV, DV 50S ribosomal protein L25 562
30 4V9C 45 BV, DV 50S ribosomal protein L25 562
31 4V85 56 BZ 50S ribosomal protein L25 1 562
32 4U1U 43 BV, DV 50S ribosomal protein L25 562
33 4V6D 45 BV, DV 50S ribosomal protein L25 562
34 4V6E 45 BV, DV 50S ribosomal protein L25 562
35 4V52 35 BV, DV 50S ribosomal protein L25 562
36 4V89 55 BZ 50S ribosomal protein L25 562
37 4V54 35 BV, DV 50S ribosomal protein L25 562
38 4V50 45 BV, DV 50S ribosomal protein L25 562
39 4V57 35 BV, DV 50S ribosomal protein L25 562
40 4V64 24 BV, DV 50S ribosomal protein L25 562
41 4V4H 24 BV, DV 50S RIBOSOMAL PROTEIN L25 562
42 4V4Q 24 BV, DV 50S ribosomal protein L25 562
43 4V5B 28 AV, CV 50S RIBOSOMAL PROTEIN L25 562
44 6BY1 25 CV, DV 50S ribosomal protein L25 562
45 4V53 35 BV, DV 50S ribosomal protein L25 562
46 4V56 35 BV, DV 50S ribosomal protein L25 562
47 4V55 35 BV, DV 50S ribosomal protein L25 562
48 4V5Y 35 BV, DV 50S ribosomal protein L25 562
49 6ZU1 45 BW 50S ribosomal protein L25 562
50 6ZTJ 48 BW 50S ribosomal protein L25 562
51 6ZTL 45 BW 50S ribosomal protein L25 562
52 6ZTM 45 BW 50S ribosomal protein L25 562
53 6ZTN 45 BW 50S ribosomal protein L25 562
54 6ZTP 45 BW 50S ribosomal protein L25 562
55 6XII 5 4 50S ribosomal protein L25 562
56 6XIJ 5 4 50S ribosomal protein L25 562
57 6XGF 5 4 50S ribosomal protein L25 562
58 6XDQ 5 4 50S ribosomal protein L25 562
59 6XDR 5 4 50S ribosomal protein L25 562
60 6X9Q 5 4 50S ribosomal protein L25 562
61 6X7K 5 4 50S ribosomal protein L25 562
62 6X6T 5 4 50S ribosomal protein L25 562
63 6X7F 5 4 50S ribosomal protein L25 562
64 6WNT 20 v 50S ribosomal protein L25 562
65 6WNV 20 v 50S ribosomal protein L25 562
66 6WNW 21 v 50S ribosomal protein L25 562
67 6YSR 29 V 50S ribosomal protein L25 562
68 6YSS 29 V 50S ribosomal protein L25 562
69 6YST 29 V 50S ribosomal protein L25 562
70 6YSU 28 V 50S ribosomal protein L25 562
71 6YSI 18 R 50S ribosomal protein L25 470
72 7BV8 23 W 50S ribosomal protein L25 562
73 6WD0 21 v 50S ribosomal protein L25 562
74 6WD1 21 v 50S ribosomal protein L25 562
75 6WD2 21 v 50S ribosomal protein L25 562
76 6WD3 21 v 50S ribosomal protein L25 562
77 6WD4 21 v 50S ribosomal protein L25 562
78 6WD5 21 v 50S ribosomal protein L25 562
79 6WD6 21 v 50S ribosomal protein L25 562
80 6WD7 21 v 50S ribosomal protein L25 562
81 6WD8 21 v 50S ribosomal protein L25 562
82 6WD9 21 v 50S ribosomal protein L25 562
83 6WDA 21 v 50S ribosomal protein L25 562
84 6WDB 21 v 50S ribosomal protein L25 562
85 6WDC 21 v 50S ribosomal protein L25 562
86 6WDD 21 v 50S ribosomal protein L25 562
87 6WDE 21 v 50S ribosomal protein L25 562
88 6WDF 21 v 50S ribosomal protein L25 562
89 6WDG 21 v 50S ribosomal protein L25 562
90 6WDH 21 v 50S ribosomal protein L25 562
91 6WDI 21 v 50S ribosomal protein L25 562
92 6WDJ 21 v 50S ribosomal protein L25 562
93 6WDK 21 v 50S ribosomal protein L25 562
94 6WDL 21 v 50S ribosomal protein L25 562
95 6WDM 21 v 50S ribosomal protein L25 562
96 6YHS 21 R 50S ribosomal protein L25 470
97 6VZJ 5 4 50S ribosomal protein L25 562
98 6VYQ 5 4 50S ribosomal protein L25 562
99 6VYR 5 4 50S ribosomal protein L25 562
100 6VYS 5 4 50S ribosomal protein L25 562
101 6VYT 5 4 50S ribosomal protein L25 562
102 6VYU 5 4 50S ribosomal protein L25 562
103 6VYW 5 4 50S ribosomal protein L25 562
104 6VYX 5 4 50S ribosomal protein L25 562
105 6VYY 5 4 50S ribosomal protein L25 562
106 6VYZ 5 4 50S ribosomal protein L25 562
107 6VZ2 5 4 50S ribosomal protein L25 562
108 6VZ3 5 4 50S ribosomal protein L25 562
109 6VZ5 5 4 50S ribosomal protein L25 562
110 6VZ7 5 4 50S ribosomal protein L25 562
111 6Y69 42 V 50S ribosomal protein L25 562
112 6VWL 19 T 50S ribosomal protein L25 562
113 6VWM 21 T 50S ribosomal protein L25 562
114 6VWN 21 T 50S ribosomal protein L25 562
115 6VU3 5 4 50S ribosomal protein L25 562
116 6XZ7 22 V 50S ribosomal protein L25 562
117 6V39 25 U 50S ribosomal protein L25 470
118 6V3A 25 U 50S ribosomal protein L25 470
119 6V3B 25 U 50S ribosomal protein L25 470
120 6V3D 25 U 50S ribosomal protein L25 470
121 6TC3 43 L251 50S ribosomal protein L25 562
122 6TBV 43 L251 50S ribosomal protein L25 562
123 6SZS 27 V 50S ribosomal protein L25 562
124 6U48 22 CW 50S ribosomal protein bL25 562
125 6PJ6 22 d 50S ribosomal protein L25 562
126 6S0K 24 W 50S ribosomal protein L25 562
127 6OUO 23 V 50S ribosomal protein L25 562
128 6OSQ 24 V 50S ribosomal protein L25 562
129 6OST 22 V 50S ribosomal protein L25 562
130 6OT3 23 V 50S ribosomal protein L25 562
131 6OSK 23 V 50S ribosomal protein L25 562
132 6ORE 25 V 50S ribosomal protein L25 562
133 6ORL 22 V 50S ribosomal protein L25 562
134 6OGF 19 v 50S ribosomal protein L25 562
135 6OGG 19 v 50S ribosomal protein L25 562
136 6OGI 19 v 50S ribosomal protein L25 562
137 6OFX 19 v 50S ribosomal protein L25 562
138 6OG7 19 v 50S ribosomal protein L25 562
139 6O9J 3 V 50S ribosomal protein L25 562
140 6O9K 43 V 50S ribosomal protein L25 562
141 6QUL 22 W 50S ribosomal protein L25 562
142 6QDW 30 w 50S ribosomal protein L25 562
143 6Q97 28 V 50S ribosomal protein L25 562
144 6Q98 26 V 50S ribosomal protein L25 562
145 6Q9A 26 V 50S ribosomal protein L25 562
146 6I0Y 10 8 50S ribosomal protein L25 562
147 6HRM 23 V 50S ribosomal protein L25 562
148 6H58 27 V, VV 50S ribosomal protein L25 562
149 6H4N 42 V 50S ribosomal protein L25 562
150 6GXM 22 V 50S ribosomal protein L25 562
151 6GXN 22 V 50S ribosomal protein L25 562
152 6GXO 22 V 50S ribosomal protein L25 562
153 6GXP 22 V 50S ribosomal protein L25 562
154 6GWT 22 V 50S ribosomal protein L25 562
155 6DNC 26 Z 50S ribosomal protein L25 562
156 6GC4 1 V 50S ribosomal protein L25 562
157 6GC8 21 V 50S ribosomal protein L25 562
158 6GBZ 19 V 50S ribosomal protein L25 562
159 6GC0 20 V 50S ribosomal protein L25 562
160 6C4I 23 W 50S ribosomal protein L25 562
161 6BU8 21 24 50S ribosomal protein L25 562
162 6ENU 43 V 50S ribosomal protein L25 562
163 6ENJ 20 V 50S ribosomal protein L25 562
164 6ENF 42 V 50S ribosomal protein L25 562
165 5WFK 22 V 50S ribosomal protein L25 562
166 5WFS 22 V 50S ribosomal protein L25 562
167 5WF0 22 V 50S ribosomal protein L25 562
168 5WE4 22 V 50S ribosomal protein L25 562
169 5WE6 22 V 50S ribosomal protein L25 562
170 5WDT 22 V 50S ribosomal protein L25 562
171 5O2R 22 V 50S ribosomal protein L25 562
172 5NWY 23 i 50S ribosomal protein L25 562
173 5NP6 46 t 50S ribosomal protein L25 562
174 5NCO 25 W 50S ribosomal protein L25 562
175 5UYK 21 24 50S ribosomal protein L25 562
176 5UYL 21 24 50S ribosomal protein L25 562
177 5UYM 21 24 50S ribosomal protein L25 562
178 5UYN 21 24 50S ribosomal protein L25 562
179 5UYP 21 24 50S ribosomal protein L25 562
180 5UYQ 21 24 50S ribosomal protein L25 562
181 5U9F 27 24 50S ribosomal protein L25 562
182 5U9G 27 24 50S ribosomal protein L25 562
183 5U4I 22 W 50S ribosomal protein L25 Gene Name(s): rplY b2185 JW2173 562
184 5MGP 21 V 50S ribosomal protein L25 562
185 5MDV 28 V 50S ribosomal protein L25 562
186 5MDW 28 V 50S ribosomal protein L25 562
187 5MDY 28 V 50S ribosomal protein L25 562
188 5MDZ 26 V 50S ribosomal protein L25 562
189 5H5U 29 W 50S ribosomal protein L25 562
190 5LZA 45 V 50S ribosomal protein L25 562
191 5LZB 47 V 50S ribosomal protein L25 562
192 5LZC 47 V 50S ribosomal protein L25 562
193 5LZD 47 V 50S ribosomal protein L25 562
194 5LZE 46 V 50S ribosomal protein L25 562
195 5LZF 46 V 50S ribosomal protein L25 562
196 5KPS 22 V 50S ribosomal protein L25 562
197 5KPV 21 U 50S ribosomal protein L25 562
198 5KPW 21 U 50S ribosomal protein L25 562
199 5KPX 21 U 50S ribosomal protein L25 562
200 5KCR 23 1Z 50S ribosomal protein L25 562
201 5KCS 24 1Z 50S ribosomal protein L25 562
202 5L3P 21 Z 50S ribosomal protein L25 562
203 5JU8 46 BV 50S ribosomal protein L25 562
204 5JTE 47 BV 50S ribosomal protein L25 562
205 5IQR 21 V 50S ribosomal protein L25 562
206 3JCN 27 V 50S ribosomal protein L25 562
207 3JCJ 26 U 50S ribosomal protein L25 562
208 3JCD 46 V 50S ribosomal protein L25 562
209 3JCE 49 V 50S ribosomal protein L25 562
210 5GAG 25 W 50S ribosomal protein L25 562
211 5GAH 25 W 50S ribosomal protein L25 562
212 5GAE 23 W 50S ribosomal protein L25 562
213 5GAF 25 W 50S ribosomal protein L25 562
214 5GAD 25 W 50S ribosomal protein L25 562
215 3JBU 47 w 50S ribosomal protein L25 562
216 3JBV 54 w 50S ribosomal protein L25 562
217 5ADY 30 V 50S RIBOSOMAL PROTEIN L25 562
218 3JA1 31 LX 50S ribosomal protein L25 562
219 3J9Z 35 LT 50S ribosomal protein L25 562
220 3J9Y 46 V 50S ribosomal protein L25 562
221 5AKA 30 V 50S RIBOSOMAL PROTEIN L25 562
222 5AFI 47 V 50S ribosomal protein L25 562
223 3J8G 18 W 50S ribosomal protein L25 562
224 4UY8 9 8 50S RIBOSOMAL PROTEIN L25 562
225 3J7Z 30 V 50S ribosomal protein L25 562
226 4CSU 32 W 50S RIBOSOMAL PROTEIN L25 562
227 4V7D 25 AY 50S ribosomal protein L25 562
228 4V7C 48 BX 50S ribosomal protein L25 562
229 4V7B 47 BV 50S ribosomal protein L25 562
230 3J5L 30 V 50S ribosomal protein L25 562
231 4V6Y 44 BV 50S ribosomal protein L23 562
232 4V6Z 44 BV 50S ribosomal protein L25 562
233 4V70 44 BV 50S ribosomal protein L25 562
234 4V71 44 BV 50S ribosomal protein L25 562
235 4V72 44 BV 50S ribosomal protein L25 562
236 4V73 44 BV 50S ribosomal protein L25 562
237 4V74 44 BV 50S ribosomal protein L25 562
238 4V75 44 BV 50S ribosomal protein L25 562
239 4V76 44 BV 50S ribosomal protein L25 562
240 4V77 44 BV 50S ribosomal protein L25 562
241 4V78 44 BV 50S ribosomal protein L25 562
242 4V79 44 BV 50S ribosomal protein L25 562
243 4V7A 43 BV 50S ribosomal protein L25 562
244 4V6V 41 BZ 50S ribosomal protein L25 562
245 4V6T 46 BV 50S ribosomal protein L25 562
246 4V6S 24 AX 50S ribosomal protein L25 562
247 4V6P 48 BX 50S ribosomal protein L25 562
248 4V6Q 48 BX 50S ribosomal protein L25 562
249 4V6R 48 BX 50S ribosomal protein L25 562
250 4V6N 24 AX 50S ribosomal protein L25 562
251 4V6O 48 BX 50S ribosomal protein L25 562
252 4V6M 50 BV 50S ribosomal protein L25 562
253 4V6K 23 AW 50S ribosomal protein L25 562
254 4V6L 47 BW 50S ribosomal protein L25 562
255 4V5H 55 BW 50S RIBOSOMAL PROTEIN L25 562
256 4V7I 26 AV 50S ribosomal protein L25 562
257 4V69 41 BV 50S ribosomal protein L25 562
258 4V65 26 BC 50S ribosomal protein L25 562
259 4V66 26 BC 50S ribosomal protein L25 562
260 3BBX 3 V 50S ribosomal protein L25 562
261 2RDO 3 V 50S ribosomal protein L25 562
262 2J28 30 V 50S RIBOSOMAL PROTEIN L25 562
263 4V4V 44 BT 50S ribosomal protein L25 562
264 4V4W 44 BT 50S ribosomal protein L25 562
265 4V47 21 AT 50S ribosomal protein L25 562
266 4V48 22 AT 50S ribosomal protein L25 562
267 1ML5 43 v 50S RIBOSOMAL PROTEIN L25 562
268 4V42 45 BV 50S RIBOSOMAL PROTEIN L25 274
269 487D 7 N PROTEIN (50S L25 RIBOSOMAL PROTEIN) 562
270 1D6K 2 A RIBOSOMAL PROTEIN L25 562
271 1B75 1 A PROTEIN (50S RIBOSOMAL PROTEIN L25) 562