4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 238 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 90 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 110 384
70 % 2 115 396
50 % 2 234 232
40 % 2 234 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 110 383
70 % 2 232 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 112 351
90 % 2 112 371
70 % 2 236 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 112 352
90 % 2 113 365
70 % 2 113 412
50 % 2 228 234
40 % 2 239 227
30 % 2 240 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 202 276
40 % 2 202 283
30 % 2 202 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 102 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 204 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 80 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 114 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 111 378
70 % 2 242 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 115 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 64 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 49 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 106 388
90 % 2 106 411
70 % 2 212 244
50 % 2 224 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 355
95 % 2 93 444
90 % 2 103 426
70 % 2 110 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 111 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 192 266
50 % 2 200 286
40 % 2 200 295
30 % 2 200 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 111 487
50 % 2 191 337
40 % 2 191 351
30 % 2 191 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 199 268
40 % 5 205 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 208 267
40 % 47 282 196
30 % 47 282 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 55 595
95 % 2 55 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 113 345
90 % 2 115 352
70 % 2 115 395
50 % 2 220 251
40 % 2 220 253
30 % 2 222 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 273
95 % 2 117 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 220 254
30 % 2 220 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 203 283
40 % 2 205 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 121 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 113 363
70 % 2 115 394
50 % 2 207 273
40 % 2 207 279
30 % 2 206 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 112 348
90 % 2 112 368
70 % 2 114 403
50 % 2 215 263
40 % 2 216 260
30 % 2 218 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 90 488
50 % 2 190 304
40 % 2 190 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 106 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 210 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 286
95 % 2 111 366
90 % 2 111 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 205 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 276
95 % 2 113 342
90 % 2 113 364
70 % 2 115 398
50 % 2 115 453
40 % 2 115 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 118 325
90 % 2 118 345
70 % 2 205 255
50 % 2 219 253
40 % 2 219 255
30 % 2 219 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 112 369
70 % 2 114 402
50 % 2 207 270
40 % 2 208 275
30 % 2 208 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 116 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 217 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 274
95 % 2 113 346
90 % 2 115 355
70 % 2 115 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 107 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 208 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 113 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 200 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 203 301
30 % 2 210 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 109 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 244 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 89 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 118 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 215 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 298
95 % 2 107 383
90 % 2 109 398
70 % 2 109 431
50 % 2 193 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 210 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 96 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 113 267
95 % 3 113 337
90 % 3 115 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 280
95 % 2 111 353
90 % 2 111 375
70 % 2 113 409
50 % 2 207 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 116 389
50 % 2 211 264
40 % 2 215 261
30 % 2 216 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 283
95 % 2 112 360
90 % 2 112 381
70 % 2 114 411
50 % 2 203 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 239 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 109 433
50 % 2 192 307
40 % 2 192 318
30 % 2 192 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 295
95 % 2 112 358
90 % 2 112 373
70 % 2 114 407
50 % 2 114 461
40 % 2 200 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 114 336
90 % 2 114 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 297
95 % 2 107 381
90 % 2 107 408
70 % 2 109 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 216 255
40 % 2 216 259
30 % 2 217 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 97 484
50 % 1 97 524
40 % 1 97 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 99 417
90 % 2 101 431
70 % 2 194 269
50 % 2 201 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 97 436
90 % 2 97 454
70 % 2 109 435
50 % 2 219 252
40 % 2 224 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 111 487
50 % 3 191 337
40 % 3 191 351
30 % 3 191 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 340
95 % 2 96 437
90 % 2 108 406
70 % 2 108 436
50 % 2 226 243
40 % 2 226 245
30 % 2 229 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 3 A 50S ribosomal protein L2P 2238
2 1VQO 4 A 50S ribosomal protein L2P 2238
3 1VQ8 4 A 50S ribosomal protein L2P 2238
4 1S72 3 A 50S ribosomal protein L2P 2238
5 1JJ2 3 A RIBOSOMAL PROTEIN L2 2238
6 1YHQ 3 A 50S ribosomal protein L2P 2238
7 1VQP 4 A 50S ribosomal protein L2P 2238
8 1VQM 4 A 50S ribosomal protein L2P 2238
9 3CC2 1 A 50S ribosomal protein L2P 2238
10 1VQL 4 A 50S ribosomal protein L2P 2238
11 1VQK 4 A 50S ribosomal protein L2P 2238
12 1VQN 5 A 50S ribosomal protein L2P 2238
13 1YIJ 3 A 50S ribosomal protein L2P 2238
14 1YI2 3 A 50S ribosomal protein L2P 2238
15 1VQ9 4 A 50S ribosomal protein L2P 2238
16 1VQ7 4 A 50S ribosomal protein L2P 2238
17 3CCM 1 A 50S ribosomal protein L2P 2238
18 1VQ5 4 A 50S ribosomal protein L2P 2238
19 3CC7 1 A 50S ribosomal protein L2P 2238
20 1YIT 7 A 50S RIBOSOMAL PROTEIN L2P 2238
21 3CCE 1 A 50S ribosomal protein L2P 2238
22 3G6E 2 A 50S ribosomal protein L2P Residues 143-264 2238
23 3CPW 3 A 50S ribosomal protein L2P 2238
24 3CCU 1 A 50S ribosomal protein L2P 2238
25 1VQ6 5 A 50S ribosomal protein L2P 2238
26 1M90 4 C RIBOSOMAL PROTEIN L2 2238
27 3CCL 1 A 50S ribosomal protein L2P 2238
28 1YJW 7 A 50S RIBOSOMAL PROTEIN L2P 2238
29 1YJ9 3 A 50S ribosomal protein L2P 2238
30 3CD6 1 A 50S ribosomal protein L2P 2238
31 3CCV 1 A 50S ribosomal protein L2P 2238
32 3CC4 1 A 50S ribosomal protein L2P 2238
33 2OTL 3 A 50S ribosomal protein L2P 2238
34 3G71 2 A 50S ribosomal protein L2P Residues 143-264 2238
35 1FFK 3 A RIBOSOMAL PROTEIN L2 2238
36 1VQ4 4 A 50S ribosomal protein L2P 2238
37 1YJN 3 A 50S ribosomal protein L2P 2238
38 3CMA 1 A 50S ribosomal protein L2P 2238
39 3CCS 1 A 50S ribosomal protein L2P 2238
40 3CCQ 1 A 50S ribosomal protein L2P 2238
41 3I56 1 A 50S ribosomal protein L2P 2238
42 3CCR 1 A 50S ribosomal protein L2P 2238
43 2OTJ 3 A 50S ribosomal protein L2P 2238
44 4V88 39 BA, DA 60S ribosomal protein L2-A 4932
45 1KQS 5 A RIBOSOMAL PROTEIN L2 2238
46 3OW2 3 A 50S ribosomal protein L2P 2238
47 4U4R 39 L2, l2 60S ribosomal protein L2-A 4932
48 3CXC 4 A RIBOSOMAL PROTEIN L2 2238
49 1QVG 4 A 50S ribosomal protein L2P 2238
50 3CME 1 A 50S ribosomal protein L2P 2238
51 2QEX 3 A 50S ribosomal protein L2P 2238
52 4U3U 39 L2, l2 60S ribosomal protein L2-A 4932
53 5TBW 4 CD, j 60S ribosomal protein L2-A 4932
54 1KC8 3 C RIBOSOMAL PROTEIN L2 2238
55 4U3M 39 L2, l2 60S ribosomal protein L2-A 4932
56 1N8R 3 C 50S ribosomal protein L2P 2238
57 4U3N 39 L2, l2 60S ribosomal protein L2-A 4932
58 1Q81 4 C 50S ribosomal protein L2P 2238
59 1Q82 4 C 50S ribosomal protein L2P 2238
60 1QVF 4 A 50S ribosomal protein L2P 2238
61 4U52 39 L2, l2 60S ribosomal protein L2-A 4932
62 4U4Q 39 L2, l2 60S ribosomal protein L2-A 4932
63 1NJI 3 C 50S ribosomal protein L2P 2238
64 4U6F 39 L2, l2 60S ribosomal protein L2-A 4932
65 4U4U 39 L2, l2 60S ribosomal protein L2-A 4932
66 1K73 3 C RIBOSOMAL PROTEIN L2 2238
67 4U4Z 39 L2, l2 60S ribosomal protein L2-A 4932
68 4U4Y 39 L2, l2 60S ribosomal protein L2-A 4932
69 4U4N 39 L2, l2 60S ribosomal protein L2-A 4932
70 4U55 39 L2, l2 60S ribosomal protein L2-A 4932
71 1K9M 3 C RIBOSOMAL PROTEIN L2 2238
72 1KD1 3 C RIBOSOMAL PROTEIN L2 2238
73 5DAT 39 L2, l2 60S ribosomal protein L2-A 4932
74 3I55 2 A 50S ribosomal protein L2P 2238
75 5I4L 39 L2, l2 60S ribosomal protein L2-A 4932
76 4U51 39 L2, l2 60S ribosomal protein L2-A 4932
77 1K8A 3 C RIBOSOMAL PROTEIN L2 2238
78 6HHQ 4 CD, j 60S ribosomal protein L2-A 4932
79 5OBM 4 L2, l2 60S ribosomal protein L2-A 4932
80 4U53 39 L2, l2 60S ribosomal protein L2-A 4932
81 5ON6 4 CD, j 60S ribosomal protein L2-A 4932
82 1Q86 4 C 50S ribosomal protein L2P 2238
83 4U50 39 L2, l2 60S ribosomal protein L2-A 4932
84 5NDV 4 L2, l2 60S ribosomal protein L2-A 4932
85 5LYB 39 L2, l2 60S ribosomal protein L2-A 4932
86 1M1K 3 C RIBOSOMAL PROTEIN L2 2238
87 3G4S 2 A 50S ribosomal protein L2P Residues 143-264 2238
88 3CCJ 1 A 50S ribosomal protein L2P 2238
89 1W2B 6 A 50S RIBOSOMAL PROTEIN L2P 2238
90 4U56 39 L2, l2 60S ribosomal protein L2-A 4932
91 2QA4 3 A 50S ribosomal protein L2P 2238
92 5TGA 39 L2, l2 60S ribosomal protein L2-A 4932
93 5MEI 4 CD, j 60S ribosomal protein L2-A 4932
94 1Q7Y 4 C 50S ribosomal protein L2P 2238
95 5FCJ 39 L2, l2 60S ribosomal protein L2-A 4932
96 4U4O 39 L2, l2 60S ribosomal protein L2-A 4932
97 5DGV 39 L2, l2 60S ribosomal protein L2-A 4932
98 5DGE 39 L2, l2 60S ribosomal protein L2-A 4932
99 5NDW 27 L2, l2 60S ribosomal protein L2-A 4932
100 4V8P 22 BA, CA, EA, GA RPL8 5911
101 5NDG 39 L2, l2 60S ribosomal protein L2-A 4932
102 5FCI 39 L2, l2 60S ribosomal protein L2-A 4932
103 5DC3 39 L2, l2 60S ribosomal protein L2-A 4932
104 5DGF 39 L2, l2 60S ribosomal protein L2-A 4932
105 5TGM 39 L2, l2 60S ribosomal protein L2-A 4932
106 4V7R 33 BB, DB 60S ribosomal protein L2 4932
107 6ZMO 4 LA 60S ribosomal protein L8 9606
108 6ZME 4 LA 60S ribosomal protein L8 9606
109 6ZMI 4 LA 60S ribosomal protein L8 9606
110 6ZM7 4 LA 60S ribosomal protein L8 9606
111 6XIQ 1 A 60S ribosomal protein L2-A 4932
112 6XIR 1 A 60S ribosomal protein L2-A 4932
113 6Z6J 39 LA 60S ribosomal protein L2-A 4932
114 6Z6K 39 LA 60S ribosomal protein L2-A 4932
115 6Z6L 4 LA 60S ribosomal protein L8 9606
116 6Z6M 4 LA 60S ribosomal protein L8 9606
117 6Z6N 4 LA 60S ribosomal protein L8 9606
118 6WOO 4 A uL2 4932
119 6YLG 6 A 60S ribosomal protein L2-A 4932
120 6YLH 6 A 60S ribosomal protein L2-A 4932
121 6YLY 1 A 60S ribosomal protein L2-A 4932
122 6W6L 1 A 60S ribosomal protein L8 9606
123 6M62 7 A 60S ribosomal protein L2-A 4932
124 6Y6X 4 LA 60S ribosomal protein L8 9606
125 6Y57 7 LA 60S ribosomal protein L8 9606
126 6Y2L 7 LA 60S ribosomal protein L8 9606
127 6Y0G 7 LA 60S ribosomal protein L8 9606
128 6LU8 45 m 60S ribosomal protein L8 9606
129 6LSR 42 m 60S ribosomal protein L8 9606
130 6LSS 43 m 60S ribosomal protein L8 9606
131 6LQM 43 m 60S ribosomal protein L8 9606
132 6TNU 41 AW 60S ribosomal protein L2-A 4932
133 6TH6 29 BC 50S ribosomal protein L2 311400
134 6UZ7 4 AA KLLA0D16027p 28985
135 6TB3 41 AW 60S ribosomal protein L2-A 4932
136 6T83 37 Ay, Da 60S ribosomal protein L2-A 4932
137 6T7T 1 LA 60S ribosomal protein L2-A 4932
138 6T7I 37 LA 60S ribosomal protein L2-A 4932
139 6T59 1 A3 Ribosomal protein L8 9986
140 6T4Q 36 LA 60S ribosomal protein L2-A 4932
141 6SV4 4 AW, XW, zW 60S ribosomal protein L2-A 4932
142 6SNT 37 h 60S ribosomal protein L2-A 4932
143 6SKF 29 BC 50S ribosomal protein L2 311400
144 6SKG 29 BC 50S ribosomal protein L2 311400
145 6SGC 36 A2 Ribosomal protein L8 9986
146 6S47 4 AD 60S ribosomal protein L2-A 4932
147 6RZZ 2 B 60S ribosomal protein L2-A 4932
148 6S05 2 B 60S ribosomal protein L2-A 4932
149 6P5I 39 AA uL2 9986
150 6P5J 39 AA uL2 9986
151 6P5K 4 AA uL2 9986
152 6P5N 4 AA uL2 9986
153 6RM3 3 LA0 uL2 6039
154 6RI5 2 B 60S ribosomal protein L2-A 4932
155 6OM7 35 A 60S ribosomal protein L8 9606
156 6OLZ 1 AA 60S ribosomal protein L8 9606
157 6OM0 35 A 60S ribosomal protein L8 9606
158 6OLE 35 A 60S ribosomal protein L8 9606
159 6OLF 35 A 60S ribosomal protein L8 9606
160 6OLG 1 AA 60S ribosomal protein L8 9606
161 6OLI 35 A 60S ribosomal protein L8 9606
162 6R84 40 E 60S ribosomal protein L2-A 4932
163 6R86 38 E 60S ribosomal protein L2-A 4932
164 6R87 39 E 60S ribosomal protein L2-A 4932
165 6R7Q 29 A uL2 9986
166 6R6G 11 A uL2 9986
167 6R6P 4 A uL2 9986
168 6R5Q 7 A uL2 9986
169 6QZP 4 LA 60S ribosomal protein L8 9606
170 6QTZ 2 B 60S ribosomal protein L2-A 4932
171 6QT0 2 B 60S ribosomal protein L2-A 4932
172 6QIK 2 B 60S ribosomal protein L2-A 4932
173 6Q8Y 24 AW 60S ribosomal protein L2-A 4932
174 6N8J 3 A 60S ribosomal protein L2-A 4932
175 6N8K 3 A 60S ribosomal protein L2-A 4932
176 6N8L 3 A 60S ribosomal protein L2-A 4932
177 6N8M 5 D 60S ribosomal protein L2-A 4932
178 6N8N 8 D 60S ribosomal protein L2-A 4932
179 6N8O 9 D 60S ribosomal protein L2-A 4932
180 6I7O 4 AW, XW 60S ribosomal protein L2-A 4932
181 6IP5 4 1D 60S ribosomal protein L8 9606
182 6IP6 4 1D 60S ribosomal protein L8 9606
183 6IP8 4 1D 60S ribosomal protein L8 9606
184 6MTB 7 A 60S ribosomal protein L8 9986
185 6MTC 5 A 60S ribosomal protein L8 9986
186 6MTD 4 A uL2 9986
187 6MTE 4 A uL2 9986
188 6HD7 8 E 60S ribosomal protein L2-A 4932
189 6HCQ 38 A3 Ribosomal protein L8 9986
190 6HCJ 38 A3 Ribosomal protein L8 9986
191 6HCM 40 A3 Ribosomal protein L8 9986
192 6HCF 40 A3 Ribosomal protein L8 9986
193 6GZ3 41 AA Ribosomal protein L8 9986
194 6GZ4 1 AA ribosomal protein uL2 9986
195 6GZ5 41 AA ribosomal protein uL2 9986
196 6GQV 6 A 60S ribosomal protein L2-A 4932
197 6GQ1 6 A 60S ribosomal protein L2-A 4932
198 6GQB 6 A 60S ribosomal protein L2-A 4932
199 6D9J 1 A uL2 9986
200 6D90 1 A uL2 9986
201 6FTG 1 A uL2 9986
202 6FTI 1 A uL2 9986
203 6FTJ 1 A uL2 9986
204 6FT6 2 A 60S ribosomal protein L2-A 4932
205 6FRK 9 A Ribosomal protein L8 9986
206 6EK0 4 LA 60S ribosomal protein L8 9606
207 6AZ3 1 A ribosomal protein uL2 5661
208 5XY3 4 A Ribosomal protein L8, putative 5722
209 5XXB 4 A Ribosomal protein uL2 5811
210 5UMD 4 D 60S ribosomal protein L2 5833
211 5MC6 63 AW 60S ribosomal protein L2-A 4932
212 5H4P 4 A 60S ribosomal protein L2-A 4932
213 5M1J 40 A5 60S ribosomal protein L2-A 4932
214 5LZS 1 A uL2 9986
215 5LZT 1 A uL2 9986
216 5LZU 1 A uL2 9986
217 5LZV 1 A uL2 9986
218 5LZW 1 A uL2 9986
219 5LZX 1 A uL2 9986
220 5LZY 1 A uL2 9986
221 5LZZ 1 A uL2 9986
222 5T62 5 D 60S ribosomal protein L2-A 4932
223 5T6R 4 D 60S ribosomal protein L2-A 4932
224 5T5H 28 e 60S ribosomal protein L2 5693
225 5T2A 29 c uL2 5661
226 5T2C 3 D 60S ribosomal protein L8 9606
227 5LKS 4 LA 60S ribosomal protein L8 9606
228 5JUO 6 F uL2 (yeast L2) 4932
229 5JUP 6 F uL2 (yeast L2) 4932
230 5JUS 6 F uL2 (yeast L2) 4932
231 5JUT 6 F uL2 (yeast L2) 4932
232 5JUU 6 F uL2 (yeast L2) 4932
233 5JCS 1 A 60S ribosomal protein L2-A 4932
234 5IT7 4 AA KLLA0D16027p 28985
235 3JCT 1 A 60S ribosomal protein L2-A 4932
236 3JCS 9 A ribosomal protein L2 5661
237 5GAK 15 E 60S ribosomal protein L2-A 4932
238 5FL8 1 A 60S ribosomal protein L2-A 4932
239 5APN 4 A 60S ribosomal protein L2-A 4932
240 5APO 4 A 60S ribosomal protein L2-A 4932
241 3JBN 69 AD 60S ribosomal protein uL2 5833
242 3JBO 69 AD 60S ribosomal protein uL2 5833
243 3JBP 69 AD 60S ribosomal protein uL2 5833
244 3JAN 1 A Ribosomal protein uL2 SEE REMARK 999 9986
245 3JAJ 1 A Ribosomal protein uL2 SEE REMARK 999 9986
246 3JAG 1 A uL2 9986
247 3JAH 1 A uL2 9986
248 3JAI 1 A uL2 9986
249 4UG0 4 LA 60S RIBOSOMAL PROTEIN L8 9606
250 5AJ0 3 AA 60S ribosomal protein L8 9606
251 3J92 1 A uL2 9986
252 4D67 1 A 60S RIBOSOMAL PROTEIN L8 9986
253 4D5Y 1 A 60S RIBOSOMAL PROTEIN UL2 9986
254 4V3P 37 LB 60S ribosomal protein L2 4565
255 3J7O 4 A Ribosomal protein uL2 9823
256 3J7P 4 A Ribosomal protein uL2 9823
257 3J7Q 4 A Ribosomal protein uL2 9823
258 3J7R 4 A Ribosomal protein uL2 9823
259 4UJC 7 BA 60S RIBOSOMAL PROTEIN L8 9986
260 4UJD 4 AA 60S RIBOSOMAL PROTEIN L8 9986
261 3J79 4 D 60S ribosomal protein uL2 5833
262 3J77 2 L2 60S ribosomal protein L2 4932
263 3J78 2 L2 60S ribosomal protein L2 4932
264 3J6X 5 L2 60S ribosomal protein L2 4932
265 3J6Y 5 L2 60S ribosomal protein L2 4932
266 4UJE 38 CA 60S RIBOSOMAL PROTEIN L8 9986
267 4V91 4 A UL2 RIBOSOMAL PROTEIN UL2 28985
268 4V7F 5 B 60S ribosomal protein L2 4932
269 4V7E 41 CA 60S ribosomal protein L2 4565
270 4V8Y 35 BA 60S RIBOSOMAL PROTEIN L2-B 4932
271 4V8Z 35 BA 60S RIBOSOMAL PROTEIN L2-B 4932
272 4V4N 43 AB 50S ribosomal protein L2 SEE REMARK 999 2190
273 4V6W 51 CA 60S ribosomal protein L8 7227
274 4V6X 51 CA 60S ribosomal protein L8 9606
275 4V8M 64 Be 60S RIBOSOMAL PROTEIN L2, PUTATIVE 185431
276 4V6U 52 BB 50S ribosomal protein L2P 2261
277 4V8T 1 A 60S RIBOSOMAL PROTEIN L2-B 4932
278 4ADX 11 A RPL2 145262
279 4V6I 31 BB 60S ribosomal protein rpL2 (L2p) 4932
280 4V7H 26 BB 60S ribosomal protein L2 5541
281 4V5Z 53 Ba 60S Ribosomal protein L8 9612
282 4V4B 21 BB 60S ribosomal protein L2 4932