4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 234 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 89 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 107 384
70 % 2 115 396
50 % 2 226 232
40 % 2 228 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 108 383
70 % 2 229 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 128 351
90 % 2 110 371
70 % 2 233 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 111 352
90 % 2 111 365
70 % 2 112 412
50 % 2 228 234
40 % 2 239 227
30 % 2 238 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 204 276
40 % 2 205 283
30 % 2 204 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 100 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 209 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 79 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 112 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 110 378
70 % 2 247 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 113 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 63 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 84 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 104 388
90 % 2 103 411
70 % 2 207 244
50 % 2 219 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 355
95 % 2 93 444
90 % 2 103 426
70 % 2 108 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 109 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 190 266
50 % 2 200 286
40 % 2 200 295
30 % 2 205 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 11 487
50 % 2 191 337
40 % 2 191 351
30 % 2 189 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 197 268
40 % 5 203 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 207 267
40 % 47 275 196
30 % 47 271 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 595
95 % 2 85 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 112 345
90 % 2 115 352
70 % 2 114 395
50 % 2 220 251
40 % 2 220 253
30 % 2 221 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 273
95 % 2 116 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 218 254
30 % 2 219 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 200 283
40 % 2 204 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 160 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 112 363
70 % 2 117 394
50 % 2 206 273
40 % 2 207 279
30 % 2 198 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 111 348
90 % 2 128 368
70 % 2 114 403
50 % 2 215 263
40 % 2 215 260
30 % 2 216 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 96 488
50 % 2 190 304
40 % 2 192 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 104 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 212 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 286
95 % 2 111 366
90 % 2 108 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 200 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 276
95 % 2 115 342
90 % 2 113 364
70 % 2 114 398
50 % 2 114 453
40 % 2 131 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 117 325
90 % 2 118 345
70 % 2 205 255
50 % 2 216 253
40 % 2 219 255
30 % 2 215 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 111 369
70 % 2 114 402
50 % 2 207 270
40 % 2 207 275
30 % 2 206 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 52 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 215 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 274
95 % 2 112 346
90 % 2 115 355
70 % 2 131 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 106 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 206 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 127 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 231 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 197 301
30 % 2 209 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 105 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 240 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 26 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 82 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 214 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 298
95 % 2 107 383
90 % 2 106 398
70 % 2 109 431
50 % 2 192 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 209 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 95 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 130 267
95 % 3 112 337
90 % 3 52 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 280
95 % 2 111 353
90 % 2 111 375
70 % 2 112 409
50 % 2 206 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 115 389
50 % 2 204 264
40 % 2 215 261
30 % 2 214 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 283
95 % 2 110 360
90 % 2 112 381
70 % 2 114 411
50 % 2 230 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 197 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 106 433
50 % 2 192 307
40 % 2 192 318
30 % 2 191 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 295
95 % 2 111 358
90 % 2 112 373
70 % 2 112 407
50 % 2 114 461
40 % 2 195 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 113 336
90 % 2 112 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 297
95 % 2 107 381
90 % 2 103 408
70 % 2 108 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 214 255
40 % 2 216 259
30 % 2 210 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 91 484
50 % 1 97 524
40 % 1 96 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 98 417
90 % 2 101 431
70 % 2 194 269
50 % 2 202 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 91 436
90 % 2 97 454
70 % 2 109 435
50 % 2 215 252
40 % 2 219 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 11 487
50 % 3 191 337
40 % 3 191 351
30 % 3 189 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 340
95 % 2 96 437
90 % 2 108 406
70 % 2 104 436
50 % 2 224 243
40 % 2 224 245
30 % 2 226 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 46 BH, DH 60S ribosomal protein L9-A 4932
2 4U4R 46 L9, l9 60S ribosomal protein L9-A 4932
3 4U3U 46 L9, l9 60S ribosomal protein L9-A 4932
4 5TBW 11 CK, q 60S ribosomal protein L9-A 4932
5 4U3M 46 L9, l9 60S ribosomal protein L9-A 4932
6 4U3N 46 L9, l9 60S ribosomal protein L9-A 4932
7 4U52 46 L9, l9 60S ribosomal protein L9-A 4932
8 4U4Q 46 L9, l9 60S ribosomal protein L9-A 4932
9 4U6F 46 L9, l9 60S ribosomal protein L9-A 4932
10 4U4U 46 L9, l9 60S ribosomal protein L9-A 4932
11 4U4Z 46 L9, l9 60S ribosomal protein L9-A 4932
12 4U4Y 46 L9, l9 60S ribosomal protein L9-A 4932
13 4U4N 46 L9, l9 60S ribosomal protein L9-A 4932
14 4U55 46 L9, l9 60S ribosomal protein L9-A 4932
15 5DAT 46 L9, l9 60S ribosomal protein L9-A 4932
16 5I4L 46 L9, l9 60S ribosomal protein L9-A 4932
17 4U51 46 L9, l9 60S ribosomal protein L9-A 4932
18 6HHQ 11 CK, q 60S ribosomal protein L9-A 4932
19 5OBM 11 L9, l9 60S ribosomal protein L9-A 4932
20 4U53 46 L9, l9 60S ribosomal protein L9-A 4932
21 5ON6 11 CK, q 60S ribosomal protein L9-A 4932
22 4U50 46 L9, l9 60S ribosomal protein L9-A 4932
23 5NDV 11 L9, l9 60S ribosomal protein L9-A 4932
24 5LYB 46 L9, l9 60S ribosomal protein L9-A 4932
25 4U56 46 L9, l9 60S ribosomal protein L9-A 4932
26 5TGA 46 L9, l9 60S ribosomal protein L9-A 4932
27 5MEI 11 CK, q 60S ribosomal protein L9-A 4932
28 5FCJ 46 L9, l9 60S ribosomal protein L9-A 4932
29 4U4O 46 L9, l9 60S ribosomal protein L9-A 4932
30 5DGV 46 L9, l9 60S ribosomal protein L9-A 4932
31 5DGE 46 L9, l9 60S ribosomal protein L9-A 4932
32 5NDW 34 L9, l9 60S ribosomal protein L9-A 4932
33 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911
34 5NDG 46 L9, l9 60S ribosomal protein L9-A 4932
35 5FCI 46 L9, l9 60S ribosomal protein L9-A 4932
36 5DC3 46 L9, l9 60S ribosomal protein L9-A 4932
37 5DGF 46 L9, l9 60S ribosomal protein L9-A 4932
38 5TGM 46 L9, l9 60S ribosomal protein L9-A 4932
39 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932
40 6ZMO 11 LH 60S ribosomal protein L9 9606
41 6ZME 11 LH 60S ribosomal protein L9 9606
42 6ZMI 11 LH 60S ribosomal protein L9 9606
43 6ZM7 11 LH 60S ribosomal protein L9 9606
44 6XIQ 8 H RPL9A isoform 1 4932
45 6XIR 8 H RPL9A isoform 1 4932
46 6Z6J 46 LH 60S ribosomal protein L9-A 4932
47 6Z6K 46 LH 60S ribosomal protein L9-A 4932
48 6Z6L 11 LH 60S ribosomal protein L9 9606
49 6Z6M 11 LH 60S ribosomal protein L9 9606
50 6Z6N 11 LH 60S ribosomal protein L9 9606
51 6WOO 11 H uL6 4932
52 6YLG 13 H 60S ribosomal protein L9-A 4932
53 6YLH 13 H 60S ribosomal protein L9-A 4932
54 6YLX 6 H 60S ribosomal protein L9-A 4932
55 6YLY 15 H 60S ribosomal protein L9-A 4932
56 6W6L 10 J 60S ribosomal protein L9 9606
57 6M62 14 H 60S ribosomal protein L9-A 4932
58 6Y6X 11 LH 60S ribosomal protein L9 9606
59 6Y57 14 LH 60S ribosomal protein L9 9606
60 6Y2L 14 LH 60S ribosomal protein L9 9606
61 6Y0G 14 LH 60S ribosomal protein L9 9606
62 6LU8 18 I 60S ribosomal protein L9 9606
63 6LSR 16 I 60S ribosomal protein L9 9606
64 6LSS 16 I 60S ribosomal protein L9 9606
65 6LQM 15 I 60S ribosomal protein L9 9606
66 6TNU 48 AD 60S ribosomal protein L9-A 4932
67 6UZ7 11 AH KLLA0F04499p 28985
68 6TB3 48 AD 60S ribosomal protein L9-A 4932
69 6T83 44 Hy, Ka 60S ribosomal protein L9-A 4932
70 6T7T 44 LH 60S ribosomal protein L9-A 4932
71 6T7I 44 LH 60S ribosomal protein L9-A 4932
72 6T59 8 H3 uL6 9986
73 6T4Q 43 LH 60S ribosomal protein L9-A 4932
74 6SV4 11 AD, XD, zD 60S ribosomal protein L9-A 4932
75 6SNT 44 o 60S ribosomal protein L9-A 4932
76 6SGC 43 H2 uL6 9986
77 6S47 11 AK 60S ribosomal protein L9-A 4932
78 6RZZ 6 F 60S ribosomal protein L9-A 4932
79 6S05 6 F 60S ribosomal protein L9-A 4932
80 6P5I 46 AH uL6 9986
81 6P5J 46 AH uL6 9986
82 6P5K 11 AH uL6 9986
83 6P5N 11 AH uL6 9986
84 6RM3 31 LH0 uL6 6039
85 6RI5 6 F 60S ribosomal protein L9-A 4932
86 6OM7 44 J 60S ribosomal protein L9 9606
87 6OLZ 13 AH 60S ribosomal protein L9 9606
88 6OM0 44 J 60S ribosomal protein L9 9606
89 6OLE 44 J 60S ribosomal protein L9 9606
90 6OLF 44 J 60S ribosomal protein L9 9606
91 6OLG 13 AH 60S ribosomal protein L9 9606
92 6OLI 44 J 60S ribosomal protein L9 9606
93 6R84 9 7 60S ribosomal protein L9-A 4932
94 6R86 8 7 60S ribosomal protein L9-A 4932
95 6R87 8 7 60S ribosomal protein L9-A 4932
96 6R7Q 36 H uL6 9986
97 6R6G 25 H uL6 9986
98 6R6P 11 H uL6 9986
99 6R5Q 14 H uL6 9986
100 6QZP 11 LH 60S ribosomal protein L9 9606
101 6QTZ 6 F 60S ribosomal protein L9-A 4932
102 6QT0 6 F 60S ribosomal protein L9-A 4932
103 6QKL 3 B 60S ribosomal protein L9 44689
104 6QIK 6 F 60S ribosomal protein L9-A 4932
105 6Q8Y 5 AD 60S ribosomal protein L9-A 4932
106 6N8J 17 H 60S ribosomal protein L9-A 4932
107 6N8K 17 H 60S ribosomal protein L9-A 4932
108 6N8L 17 H 60S ribosomal protein L9-A 4932
109 6N8M 12 K 60S ribosomal protein L9-A 4932
110 6N8N 15 K 60S ribosomal protein L9-A 4932
111 6N8O 16 K 60S ribosomal protein L9-A 4932
112 6I7O 11 AD, XD 60S ribosomal protein L9-A 4932
113 6IP5 11 2C 60S ribosomal protein L9 9606
114 6IP6 11 2C 60S ribosomal protein L9 9606
115 6IP8 11 2C 60S ribosomal protein L9 9606
116 6MTB 14 H 60S ribosomal protein L9 9986
117 6MTC 12 H 60S ribosomal protein L9 9986
118 6MTD 11 H uL6 9986
119 6MTE 11 H uL6 9986
120 6HD7 15 L 60S ribosomal protein L9-A 4932
121 6HCQ 45 H3 uL6 9986
122 6HCJ 45 H3 uL6 9986
123 6HCM 45 H3 uL6 9986
124 6HCF 45 H3 uL6 9986
125 6GZ3 48 AH ribosomal protein uL6 9986
126 6GZ4 48 AH ribosomal protein uL6 9986
127 6GZ5 48 AH ribosomal protein uL6 9986
128 6GQV 13 H 60S ribosomal protein L9-A 4932
129 6GQ1 13 H 60S ribosomal protein L9-A 4932
130 6GQB 13 H 60S ribosomal protein L9-A 4932
131 6D9J 8 H uL6 9986
132 6D90 8 H uL6 9986
133 6FTG 8 H uL6 9986
134 6FTI 8 H uL6 9986
135 6FTJ 8 H uL6 9986
136 6FT6 9 H 60S ribosomal protein L9-A 4932
137 6FRK 16 H Ribosomal protein uL6 9986
138 5Z3G 12 L 60S ribosomal protein L9-A 4932
139 6EM1 23 H 60S ribosomal protein L9-A 4932
140 6EM5 29 H 60S ribosomal protein L9-A Backbone model 4932
141 6ELZ 30 H 60S ribosomal protein L9-A 4932
142 6EK0 11 LH 60S ribosomal protein L9 9606
143 6AZ3 5 E ribosomal protein uL6 5661
144 5XY3 11 H Ribosomal protein L6, putative 5722
145 5XXB 11 H Ribosomal protein uL6 5811
146 5UMD 8 H 60S ribosomal protein L6, putative 5833
147 5MC6 44 AD 60S ribosomal protein L9-A 4932
148 5H4P 11 H 60S ribosomal protein L9-A 4932
149 5M1J 53 H5 60S ribosomal protein L9-A 4932
150 5LZS 8 H uL6 9986
151 5LZT 8 H uL6 9986
152 5LZU 8 H uL6 9986
153 5LZV 8 H uL6 9986
154 5LZW 8 H uL6 9986
155 5LZX 8 H uL6 9986
156 5LZY 8 H uL6 9986
157 5LZZ 8 H uL6 9986
158 5T62 12 K 60S ribosomal protein L9-A 4932
159 5T6R 11 K 60S ribosomal protein L9-A 4932
160 5T2A 49 w uL6 5661
161 5T2C 32 o 60S ribosomal protein L9 9606
162 5LKS 11 LH 60S ribosomal protein L9 9606
163 5JUO 13 M uL6 (yeast L9) 4932
164 5JUP 13 M uL6 (yeast L9) 4932
165 5JUS 13 M uL6 (yeast L9) 4932
166 5JUT 13 M uL6 (yeast L9) 4932
167 5JUU 13 M uL6 (yeast L9) 4932
168 5JCS 15 H 60S ribosomal protein L9-A 4932
169 5IT7 11 HH KLLA0F04499p 28985
170 3JCT 8 H 60S ribosomal protein L9-A 4932
171 3JCS 13 E ribosomal protein L6 5661
172 5GAK 29 L 60S ribosomal protein L9-A 4932
173 5FL8 8 H Rpl9ap 4932
174 5APN 11 H 60S ribosomal protein L9-A 4932
175 5APO 11 H 60S ribosomal protein L9-A 4932
176 3JBN 74 AH 60S ribosomal protein uL6 5833
177 3JBO 74 AH 60S ribosomal protein uL6 5833
178 3JBP 74 AH 60S ribosomal protein uL6 5833
179 5AN9 2 B 60S RIBOSOMAL PROTEIN L9 44689
180 5ANB 2 B 60S RIBOSOMAL PROTEIN L9 44689
181 5ANC 2 B 60S RIBOSOMAL PROTEIN L9 44689
182 3JAN 4 H Ribosomal protein uL6 SEE REMARK 999 9986
183 3JAJ 4 H Ribosomal protein uL6 SEE REMARK 999 9986
184 3JAG 8 H uL6 9986
185 3JAH 8 H uL6 9986
186 3JAI 8 H uL6 9986
187 4UG0 11 LH 60S RIBOSOMAL PROTEIN L9 9606
188 5AJ0 10 AH 60S ribosomal protein L9 9606
189 3J92 8 H uL6 9986
190 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986
191 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986
192 4V3P 39 LF 60S ribosomal protein L9 4565
193 3J7O 11 H Ribosomal protein uL6 9823
194 3J7P 11 H Ribosomal protein uL6 9823
195 3J7Q 11 H Ribosomal protein uL6 9823
196 3J7R 11 H Ribosomal protein uL6 9823
197 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986
198 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986
199 3J79 8 H 60S ribosomal protein uL6 5833
200 3J77 9 L9 60S ribosomal protein L9 4932
201 3J78 9 L9 60S ribosomal protein L9 4932
202 3J6X 12 L9 60S ribosomal protein L9 4932
203 3J6Y 12 L9 60S ribosomal protein L9 4932
204 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986
205 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985
206 4V7F 9 F 60S ribosomal protein L9 4932
207 4V7E 43 CH 60S ribosomal protein L6 4565
208 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
209 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
210 4V6W 80 CH 60S ribosomal protein L9 7227
211 4V6X 80 CH 60S ribosomal protein L9 9606
212 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431
213 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 4932
214 3J16 6 F 60S ribosomal protein L6 4932
215 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932
216 4V7H 32 BH 60S ribosomal protein L9(A) 5541
217 4V5Z 57 Be 60S Ribosomal protein L9 9612
218 4V4B 27 BH 60S ribosomal protein L9-A 4932