4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 412
95 % 2 70 528
90 % 2 76 510
70 % 2 93 460
50 % 2 190 260
40 % 2 194 260
30 % 2 194 272
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 350
95 % 2 80 459
90 % 2 92 428
70 % 2 185 250
50 % 2 200 236
40 % 2 208 236
30 % 2 208 246
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1547
95 % 2 65 614
90 % 2 68 624
70 % 2 84 537
50 % 2 84 564
40 % 2 84 604
30 % 2 84 621
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 358
95 % 2 78 471
90 % 2 90 438
70 % 2 95 449
50 % 2 197 244
40 % 2 197 253
30 % 2 197 264
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1147
95 % 2 51 774
90 % 2 53 771
70 % 2 85 506
50 % 2 85 533
40 % 2 88 559
30 % 2 88 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 362
95 % 2 78 472
90 % 2 90 441
70 % 2 190 248
50 % 2 197 246
40 % 2 205 239
30 % 2 206 248
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 349
95 % 2 92 413
90 % 2 92 427
70 % 2 198 227
50 % 2 199 238
40 % 2 199 247
30 % 2 199 259
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 533
95 % 2 68 548
90 % 2 68 576
70 % 2 86 499
50 % 2 179 302
40 % 2 187 286
30 % 2 187 304
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 348
95 % 2 91 416
90 % 2 92 430
70 % 2 92 461
50 % 2 190 253
40 % 2 198 249
30 % 2 199 260
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 415
95 % 2 70 531
90 % 2 82 491
70 % 2 82 518
50 % 2 176 304
40 % 2 176 310
30 % 2 176 327
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 606
95 % 2 51 787
90 % 2 51 820
70 % 2 59 759
50 % 2 68 715
40 % 2 133 403
30 % 2 133 414
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 371
95 % 2 76 479
90 % 2 88 452
70 % 2 183 254
50 % 2 192 252
40 % 2 202 242
30 % 2 202 255
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 375
95 % 2 74 488
90 % 2 74 515
70 % 2 86 492
50 % 2 87 519
40 % 2 87 554
30 % 2 88 574
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 381
95 % 2 74 494
90 % 2 74 523
70 % 2 86 496
50 % 2 86 525
40 % 2 88 537
30 % 2 88 564
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 386
95 % 2 73 501
90 % 2 85 473
70 % 2 85 501
50 % 2 171 317
40 % 2 171 327
30 % 2 171 341
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 364
95 % 2 94 411
90 % 2 94 425
70 % 2 201 234
50 % 2 203 231
40 % 3 212 230
30 % 38 808 23
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 366
95 % 2 90 421
90 % 2 90 435
70 % 2 204 222
50 % 2 214 221
40 % 2 214 227
30 % 2 214 235
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 365
95 % 2 78 476
90 % 2 90 446
70 % 2 90 474
50 % 2 192 267
40 % 2 192 280
30 % 2 192 292
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 590
95 % 2 50 796
90 % 2 50 831
70 % 2 58 775
50 % 2 58 807
40 % 2 58 837
30 % 2 60 857
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 570
95 % 1 47 762
90 % 1 51 757
70 % 1 51 779
50 % 1 85 552
40 % 1 85 591
30 % 1 85 608
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 378
95 % 2 87 441
90 % 2 87 468
70 % 2 175 270
50 % 2 187 268
40 % 2 187 281
30 % 2 187 295
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 384
95 % 2 74 499
90 % 2 84 478
70 % 2 91 470
50 % 2 97 470
40 % 2 161 336
30 % 2 161 355
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 632
95 % 2 90 419
90 % 2 90 436
70 % 2 191 247
50 % 2 202 232
40 % 2 203 241
30 % 2 203 252
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 383
95 % 2 72 504
90 % 2 73 528
70 % 2 168 281
50 % 2 176 294
40 % 2 176 305
30 % 2 176 325
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 370
95 % 2 95 481
90 % 2 107 456
70 % 2 107 484
50 % 2 171 360
40 % 2 171 371
30 % 2 171 385
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 774
95 % 1 43 949
90 % 1 43 982
70 % 1 78 627
50 % 1 82 628
40 % 1 82 667
30 % 1 82 685
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 394
95 % 3 77 452
90 % 3 77 481
70 % 3 77 508
50 % 5 176 280
40 % 5 182 271
30 % 5 183 283
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1033
95 % 1 27 1370
90 % 1 27 1410
70 % 3 33 1227
50 % 3 33 1278
40 % 3 33 1315
30 % 3 33 1349
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 292
95 % 2 97 392
90 % 2 99 397
70 % 2 174 278
50 % 2 187 277
40 % 47 258 200
30 % 47 258 210
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 581
95 % 2 51 785
90 % 2 51 819
70 % 2 59 761
50 % 2 66 732
40 % 2 66 760
30 % 2 66 800
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 288
95 % 2 103 355
90 % 2 105 362
70 % 2 105 402
50 % 2 198 250
40 % 2 198 262
30 % 2 200 269
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 270
95 % 2 107 329
90 % 2 107 346
70 % 2 109 385
50 % 2 157 345
40 % 2 198 263
30 % 2 198 275
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 316
95 % 2 95 405
90 % 2 95 421
70 % 2 97 442
50 % 2 183 290
40 % 2 185 292
30 % 2 185 311
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 298
95 % 2 102 356
90 % 2 103 369
70 % 2 106 393
50 % 2 107 444
40 % 2 111 456
30 % 2 111 474
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 267
95 % 2 103 352
90 % 2 103 371
70 % 2 105 398
50 % 2 185 284
40 % 2 185 295
30 % 2 184 319
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 106 350
90 % 2 106 375
70 % 2 108 397
50 % 2 169 328
40 % 2 171 333
30 % 2 171 350
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 272
95 % 2 102 357
90 % 2 102 378
70 % 2 104 405
50 % 2 193 270
40 % 47 265 193
30 % 47 266 203
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 341
95 % 2 83 449
90 % 2 85 470
70 % 2 85 498
50 % 2 176 310
40 % 2 176 319
30 % 2 176 334
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1157
95 % 2 98 385
90 % 2 100 392
70 % 3 186 257
50 % 3 190 271
40 % 3 190 283
30 % 3 190 298
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 280
95 % 2 101 372
90 % 2 101 390
70 % 2 103 412
50 % 2 103 462
40 % 2 183 303
30 % 2 183 324
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 387
95 % 3 72 505
90 % 3 72 534
70 % 3 84 503
50 % 3 168 323
40 % 3 168 332
30 % 3 168 349
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 268
95 % 2 103 354
90 % 2 103 372
70 % 2 105 399
50 % 2 105 456
40 % 2 105 484
30 % 2 105 501
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 262
95 % 2 108 328
90 % 2 108 345
70 % 2 183 265
50 % 2 197 256
40 % 2 197 267
30 % 2 197 281
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 305
95 % 2 95 402
90 % 2 102 377
70 % 2 104 404
50 % 2 185 281
40 % 2 186 291
30 % 2 186 309
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 256
95 % 2 106 334
90 % 2 108 340
70 % 2 108 389
50 % 2 195 259
40 % 2 195 272
30 % 2 195 285
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 266
95 % 2 103 349
90 % 2 105 355
70 % 2 105 396
50 % 2 186 289
40 % 2 191 287
30 % 2 191 305
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 293
95 % 2 97 391
90 % 2 97 408
70 % 2 100 419
50 % 2 185 286
40 % 2 186 297
30 % 2 186 312
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 283
95 % 2 101 377
90 % 2 103 382
70 % 2 103 414
50 % 2 176 319
40 % 2 177 320
30 % 2 178 332
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 295
95 % 2 97 389
90 % 2 99 398
70 % 2 99 423
50 % 2 175 318
40 % 2 181 315
30 % 2 188 303
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 456
95 % 2 72 597
90 % 2 72 629
70 % 2 73 650
50 % 2 73 683
40 % 2 73 715
30 % 2 74 717
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 263
95 % 2 104 346
90 % 2 106 353
70 % 2 197 240
50 % 2 198 251
40 % 2 198 264
30 % 2 198 274
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 368
95 % 2 77 480
90 % 2 89 455
70 % 2 181 261
50 % 2 191 255
40 % 2 195 258
30 % 2 204 254
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 477
95 % 2 66 627
90 % 2 66 654
70 % 2 67 680
50 % 2 67 720
40 % 2 114 489
30 % 2 114 511
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 425
95 % 2 77 556
90 % 2 78 573
70 % 2 78 599
50 % 2 78 638
40 % 2 80 655
30 % 2 81 669
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 249
95 % 2 108 324
90 % 2 110 335
70 % 2 110 381
50 % 2 193 266
40 % 2 193 278
30 % 2 193 291
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 302
95 % 2 97 397
90 % 2 99 403
70 % 2 99 435
50 % 2 171 326
40 % 2 184 298
30 % 2 186 314
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 309
95 % 2 98 387
90 % 2 100 393
70 % 2 100 418
50 % 2 188 275
40 % 2 189 284
30 % 2 191 296
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 329
95 % 2 89 432
90 % 2 91 440
70 % 2 91 466
50 % 2 91 505
40 % 2 91 540
30 % 2 91 566
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 261
95 % 3 103 341
90 % 3 105 351
70 % 3 105 392
50 % 3 146 363
40 % 3 146 374
30 % 3 146 388
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 276
95 % 2 101 364
90 % 2 101 385
70 % 2 103 410
50 % 2 185 283
40 % 2 185 296
30 % 2 185 316
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 265
95 % 2 104 348
90 % 2 104 368
70 % 2 106 395
50 % 2 189 274
40 % 2 193 279
30 % 2 194 287
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 274
95 % 2 102 362
90 % 2 102 383
70 % 2 104 408
50 % 2 181 308
40 % 2 183 311
30 % 2 183 328
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 361
95 % 2 79 462
90 % 2 91 432
70 % 2 91 462
50 % 2 201 234
40 % 2 201 244
30 % 2 201 258
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 300
95 % 2 97 400
90 % 2 97 412
70 % 2 99 430
50 % 2 170 329
40 % 2 170 335
30 % 2 170 354
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 253
95 % 2 107 330
90 % 2 107 347
70 % 2 109 387
50 % 2 188 282
40 % 2 199 261
30 % 2 201 268
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 294
95 % 2 102 365
90 % 2 102 386
70 % 2 104 411
50 % 2 104 461
40 % 2 178 316
30 % 2 178 331
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 264
95 % 2 104 343
90 % 2 104 366
70 % 2 148 306
50 % 2 193 264
40 % 2 193 276
30 % 2 193 289
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 303
95 % 2 97 401
90 % 2 97 416
70 % 2 99 437
50 % 2 99 484
40 % 2 106 472
30 % 2 106 493
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 278
95 % 2 101 363
90 % 2 101 384
70 % 2 176 276
50 % 2 189 273
40 % 2 191 282
30 % 2 192 294
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 543
95 % 1 50 730
90 % 1 50 766
70 % 1 96 467
50 % 1 96 506
40 % 1 96 541
30 % 1 96 567
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 346
95 % 2 81 460
90 % 2 81 490
70 % 2 163 284
50 % 2 163 334
40 % 2 163 344
30 % 2 163 361
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 307
95 % 2 94 408
90 % 2 96 410
70 % 2 174 279
50 % 2 181 298
40 % 2 182 306
30 % 2 182 326
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 308
95 % 2 94 406
90 % 2 94 422
70 % 2 96 444
50 % 2 184 285
40 % 2 185 293
30 % 23 208 256
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 374
95 % 2 77 485
90 % 2 77 509
70 % 2 89 489
50 % 2 182 296
40 % 2 187 289
30 % 2 187 306
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 370
95 % 3 95 481
90 % 3 107 456
70 % 3 107 484
50 % 3 171 360
40 % 3 171 371
30 % 3 171 385
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54937
95 % 1 43 1535
90 % 2 47 1454
70 % 2 48 1448
50 % 2 69 1016
40 % 2 69 1043
30 % 2 69 1093
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 372
95 % 2 76 483
90 % 2 88 460
70 % 2 88 485
50 % 2 188 272
40 % 2 188 285
30 % 2 191 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CC7 5 E 50S ribosomal protein L6P 2238
20 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
21 3CCE 5 E 50S ribosomal protein L6P 2238
22 3G6E 6 E 50S ribosomal protein L6P 2238
23 3CPW 7 E 50S ribosomal protein L6P 2238
24 3CCU 5 E 50S ribosomal protein L6P 2238
25 1VQ6 9 E 50S ribosomal protein L6P 2238
26 1M90 8 G RIBOSOMAL PROTEIN L6 2238
27 3CCL 5 E 50S ribosomal protein L6P 2238
28 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
29 1YJ9 7 E 50S ribosomal protein L6P 2238
30 3CD6 5 E 50S ribosomal protein L6P 2238
31 3CCV 5 E 50S ribosomal protein L6P 2238
32 3CC4 5 E 50S ribosomal protein L6P 2238
33 2OTL 7 E 50S ribosomal protein L6P 2238
34 3G71 6 E 50S ribosomal protein L6P 2238
35 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
36 1VQ4 8 E 50S ribosomal protein L6P 2238
37 1YJN 7 E 50S ribosomal protein L6P 2238
38 3CMA 5 E 50S ribosomal protein L6P 2238
39 3CCS 5 E 50S ribosomal protein L6P 2238
40 3CCQ 5 E 50S ribosomal protein L6P 2238
41 3I56 5 E 50S ribosomal protein L6P 2238
42 3CCR 5 E 50S ribosomal protein L6P 2238
43 2OTJ 7 E 50S ribosomal protein L6P 2238
44 4V88 46 BH, DH 60S ribosomal protein L9-A 4932
45 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
46 3OW2 7 E 50S ribosomal protein L6P 2238
47 4U4R 46 L9, l9 60S ribosomal protein L9-A 4932
48 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
49 1QVG 8 E 50S ribosomal protein L6P 2238
50 3CME 5 E 50S ribosomal protein L6P 2238
51 2QEX 7 E 50S ribosomal protein L6P 2238
52 4U3U 46 L9, l9 60S ribosomal protein L9-A 4932
53 5TBW 11 CK, q 60S ribosomal protein L9-A 4932
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 4932
56 1N8R 7 G 50S ribosomal protein L6P 2238
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 4932
58 1Q81 8 G 50S ribosomal protein L6P 2238
59 1Q82 8 G 50S ribosomal protein L6P 2238
60 1QVF 8 E 50S ribosomal protein L6P 2238
61 4U52 46 L9, l9 60S ribosomal protein L9-A 4932
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 4932
63 1NJI 7 G 50S ribosomal protein L6P 2238
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 4932
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 4932
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 4932
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 4932
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 4932
70 4U55 46 L9, l9 60S ribosomal protein L9-A 4932
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
73 5DAT 46 L9, l9 60S ribosomal protein L9-A 4932
74 3I55 6 E 50S ribosomal protein L6P 2238
75 5I4L 46 L9, l9 60S ribosomal protein L9-A 4932
76 4U51 46 L9, l9 60S ribosomal protein L9-A 4932
77 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
78 6HHQ 11 CK, q 60S ribosomal protein L9-A 4932
79 5OBM 11 L9, l9 60S ribosomal protein L9-A 4932
80 4U53 46 L9, l9 60S ribosomal protein L9-A 4932
81 5ON6 11 CK, q 60S ribosomal protein L9-A 4932
82 1Q86 8 G 50S ribosomal protein L6P 2238
83 4U50 46 L9, l9 60S ribosomal protein L9-A 4932
84 5NDV 11 L9, l9 60S ribosomal protein L9-A 4932
85 5LYB 46 L9, l9 60S ribosomal protein L9-A 4932
86 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
87 3G4S 6 E 50S ribosomal protein L6P 2238
88 3CCJ 5 E 50S ribosomal protein L6P 2238
89 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
90 4U56 46 L9, l9 60S ribosomal protein L9-A 4932
91 2QA4 7 E 50S ribosomal protein L6P 2238
92 5TGA 46 L9, l9 60S ribosomal protein L9-A 4932
93 5MEI 11 CK, q 60S ribosomal protein L9-A 4932
94 1Q7Y 8 G 50S ribosomal protein L6P 2238
95 5FCJ 46 L9, l9 60S ribosomal protein L9-A 4932
96 4U4O 46 L9, l9 60S ribosomal protein L9-A 4932
97 5DGV 46 L9, l9 60S ribosomal protein L9-A 4932
98 5DGE 46 L9, l9 60S ribosomal protein L9-A 4932
99 5NDW 34 L9, l9 60S ribosomal protein L9-A 4932
100 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911
101 5NDG 46 L9, l9 60S ribosomal protein L9-A 4932
102 5FCI 46 L9, l9 60S ribosomal protein L9-A 4932
103 5DC3 46 L9, l9 60S ribosomal protein L9-A 4932
104 5DGF 46 L9, l9 60S ribosomal protein L9-A 4932
105 5TGM 46 L9, l9 60S ribosomal protein L9-A 4932
106 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932
107 6Y6X 11 LH 60S ribosomal protein L9 9606
108 6Y57 14 LH 60S ribosomal protein L9 9606
109 6Y2L 14 LH 60S ribosomal protein L9 9606
110 6Y0G 14 LH 60S ribosomal protein L9 9606
111 6TNU 48 AD 60S ribosomal protein L9-A 4932
112 6UZ7 11 AH KLLA0F04499p 28985
113 6TB3 48 AD 60S ribosomal protein L9-A 4932
114 6T83 44 Hy, Ka 60S ribosomal protein L9-A 4932
115 6T7T 44 LH 60S ribosomal protein L9-A 4932
116 6T7I 44 LH 60S ribosomal protein L9-A 4932
117 6T59 8 H3 uL6 9986
118 6T4Q 43 LH 60S ribosomal protein L9-A 4932
119 6SV4 11 AD, XD, zD 60S ribosomal protein L9-A 4932
120 6SNT 44 o 60S ribosomal protein L9-A 4932
121 6SGC 43 H2 uL6 9986
122 6S47 11 AK 60S ribosomal protein L9-A 4932
123 6RZZ 6 F 60S ribosomal protein L9-A 4932
124 6S05 6 F 60S ribosomal protein L9-A 4932
125 6P5I 46 AH uL6 9986
126 6P5J 46 AH uL6 9986
127 6P5K 11 AH uL6 9986
128 6P5N 11 AH uL6 9986
129 6RM3 31 LH0 uL6 6039
130 6RI5 6 F 60S ribosomal protein L9-A 4932
131 6OM7 44 J 60S ribosomal protein L9 9606
132 6OLZ 13 AH 60S ribosomal protein L9 9606
133 6OM0 44 J 60S ribosomal protein L9 9606
134 6OLE 44 J 60S ribosomal protein L9 9606
135 6OLF 44 J 60S ribosomal protein L9 9606
136 6OLG 13 AH 60S ribosomal protein L9 9606
137 6OLI 44 J 60S ribosomal protein L9 9606
138 6R84 9 7 60S ribosomal protein L9-A 4932
139 6R86 8 7 60S ribosomal protein L9-A 4932
140 6R87 8 7 60S ribosomal protein L9-A 4932
141 6R7Q 36 H uL6 9986
142 6R6G 25 H uL6 9986
143 6R6P 11 H uL6 9986
144 6R5Q 14 H uL6 9986
145 6QZP 11 LH 60S ribosomal protein L9 9606
146 6QTZ 6 F 60S ribosomal protein L9-A 4932
147 6QT0 6 F 60S ribosomal protein L9-A 4932
148 6QKL 3 B 60S ribosomal protein L9 44689
149 6QIK 6 F 60S ribosomal protein L9-A 4932
150 6Q8Y 5 AD 60S ribosomal protein L9-A 4932
151 6N8J 17 H 60S ribosomal protein L9-A 4932
152 6N8K 17 H 60S ribosomal protein L9-A 4932
153 6N8L 17 H 60S ribosomal protein L9-A 4932
154 6N8M 12 K 60S ribosomal protein L9-A 4932
155 6N8N 15 K 60S ribosomal protein L9-A 4932
156 6N8O 16 K 60S ribosomal protein L9-A 4932
157 6I7O 11 AD, XD 60S ribosomal protein L9-A 4932
158 6IP5 11 2C 60S ribosomal protein L9 9606
159 6IP6 11 2C 60S ribosomal protein L9 9606
160 6IP8 11 2C 60S ribosomal protein L9 9606
161 6MTB 14 H 60S ribosomal protein L9 9986
162 6MTC 12 H 60S ribosomal protein L9 9986
163 6MTD 11 H uL6 9986
164 6MTE 11 H uL6 9986
165 6HD7 15 L 60S ribosomal protein L9-A 4932
166 6HCQ 45 H3 uL6 9986
167 6HCJ 45 H3 uL6 9986
168 6HCM 45 H3 uL6 9986
169 6HCF 45 H3 uL6 9986
170 6GZ3 48 AH ribosomal protein uL6 9986
171 6GZ4 48 AH ribosomal protein uL6 9986
172 6GZ5 48 AH ribosomal protein uL6 9986
173 6GQV 13 H 60S ribosomal protein L9-A 4932
174 6GQ1 13 H 60S ribosomal protein L9-A 4932
175 6GQB 13 H 60S ribosomal protein L9-A 4932
176 6D9J 8 H uL6 9986
177 6D90 8 H uL6 9986
178 6FTG 8 H uL6 9986
179 6FTI 8 H uL6 9986
180 6FTJ 8 H uL6 9986
181 6FT6 9 H 60S ribosomal protein L9-A 4932
182 6FRK 16 H Ribosomal protein uL6 9986
183 5Z3G 12 L 60S ribosomal protein L9-A 4932
184 6EM1 23 H 60S ribosomal protein L9-A 4932
185 6EM5 29 H 60S ribosomal protein L9-A Backbone model 4932
186 6ELZ 30 H 60S ribosomal protein L9-A 4932
187 6EK0 11 LH 60S ribosomal protein L9 9606
188 6AZ3 5 E ribosomal protein uL6 5661
189 5XY3 11 H Ribosomal protein L6, putative 5722
190 5XXB 11 H Ribosomal protein uL6 5811
191 5UMD 8 H 60S ribosomal protein L6, putative 5833
192 5MC6 44 AD 60S ribosomal protein L9-A 4932
193 5H4P 11 H 60S ribosomal protein L9-A 4932
194 5M1J 53 H5 60S ribosomal protein L9-A 4932
195 5LZS 8 H uL6 9986
196 5LZT 8 H uL6 9986
197 5LZU 8 H uL6 9986
198 5LZV 8 H uL6 9986
199 5LZW 8 H uL6 9986
200 5LZX 8 H uL6 9986
201 5LZY 8 H uL6 9986
202 5LZZ 8 H uL6 9986
203 5T62 12 K 60S ribosomal protein L9-A 4932
204 5T6R 11 K 60S ribosomal protein L9-A 4932
205 5T2A 49 w uL6 5661
206 5T2C 32 o 60S ribosomal protein L9 9606
207 5LKS 11 LH 60S ribosomal protein L9 9606
208 5JUO 13 M uL6 (yeast L9) 4932
209 5JUP 13 M uL6 (yeast L9) 4932
210 5JUS 13 M uL6 (yeast L9) 4932
211 5JUT 13 M uL6 (yeast L9) 4932
212 5JUU 13 M uL6 (yeast L9) 4932
213 5JCS 15 H 60S ribosomal protein L9-A 4932
214 5IT7 11 HH KLLA0F04499p 28985
215 3JCT 8 H 60S ribosomal protein L9-A 4932
216 3JCS 13 E ribosomal protein L6 5661
217 5GAK 29 L 60S ribosomal protein L9-A 4932
218 5FL8 8 H Rpl9ap 4932
219 5APN 11 H 60S ribosomal protein L9-A 4932
220 5APO 11 H 60S ribosomal protein L9-A 4932
221 3JBN 74 AH 60S ribosomal protein uL6 5833
222 3JBO 74 AH 60S ribosomal protein uL6 5833
223 3JBP 74 AH 60S ribosomal protein uL6 5833
224 5AN9 2 B 60S RIBOSOMAL PROTEIN L9 44689
225 5ANB 2 B 60S RIBOSOMAL PROTEIN L9 44689
226 5ANC 2 B 60S RIBOSOMAL PROTEIN L9 44689
227 3JAN 4 H Ribosomal protein uL6 SEE REMARK 999 9986
228 3JAJ 4 H Ribosomal protein uL6 SEE REMARK 999 9986
229 3JAG 8 H uL6 9986
230 3JAH 8 H uL6 9986
231 3JAI 8 H uL6 9986
232 4UG0 11 LH 60S RIBOSOMAL PROTEIN L9 9606
233 5AJ0 10 AH 60S ribosomal protein L9 9606
234 3J92 8 H uL6 9986
235 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986
236 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986
237 4V3P 39 LF 60S ribosomal protein L9 4565
238 3J7O 11 H Ribosomal protein uL6 9823
239 3J7P 11 H Ribosomal protein uL6 9823
240 3J7Q 11 H Ribosomal protein uL6 9823
241 3J7R 11 H Ribosomal protein uL6 9823
242 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986
243 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986
244 3J79 8 H 60S ribosomal protein uL6 5833
245 3J77 9 L9 60S ribosomal protein L9 4932
246 3J78 9 L9 60S ribosomal protein L9 4932
247 3J6X 12 L9 60S ribosomal protein L9 4932
248 3J6Y 12 L9 60S ribosomal protein L9 4932
249 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986
250 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985
251 4V7F 9 F 60S ribosomal protein L9 4932
252 4V7E 43 CH 60S ribosomal protein L6 4565
253 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
254 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
255 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190
256 4V6W 80 CH 60S ribosomal protein L9 7227
257 4V6X 80 CH 60S ribosomal protein L9 9606
258 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431
259 4V6U 54 BF 50S ribosomal protein L6P 2261
260 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 4932
261 4ADX 15 E RPL6 145262
262 3J16 6 F 60S ribosomal protein L6 4932
263 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932
264 4V7H 32 BH 60S ribosomal protein L9(A) 5541
265 4V5Z 57 Be 60S Ribosomal protein L9 9612
266 4V4B 27 BH 60S ribosomal protein L9-A 4932