4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 234 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 89 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 107 384
70 % 2 115 396
50 % 2 226 232
40 % 2 228 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 108 383
70 % 2 229 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 128 351
90 % 2 110 371
70 % 2 233 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 111 352
90 % 2 111 365
70 % 2 112 412
50 % 2 228 234
40 % 2 239 227
30 % 2 238 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 204 276
40 % 2 205 283
30 % 2 204 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 100 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 209 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 79 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 112 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 110 378
70 % 2 247 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 113 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 63 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 84 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 104 388
90 % 2 103 411
70 % 2 207 244
50 % 2 219 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 355
95 % 2 93 444
90 % 2 103 426
70 % 2 108 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 109 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 190 266
50 % 2 200 286
40 % 2 200 295
30 % 2 205 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 11 487
50 % 2 191 337
40 % 2 191 351
30 % 2 189 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 197 268
40 % 5 203 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 207 267
40 % 47 275 196
30 % 47 271 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 595
95 % 2 85 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 112 345
90 % 2 115 352
70 % 2 114 395
50 % 2 220 251
40 % 2 220 253
30 % 2 221 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 273
95 % 2 116 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 218 254
30 % 2 219 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 200 283
40 % 2 204 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 160 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 112 363
70 % 2 117 394
50 % 2 206 273
40 % 2 207 279
30 % 2 198 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 111 348
90 % 2 128 368
70 % 2 114 403
50 % 2 215 263
40 % 2 215 260
30 % 2 216 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 96 488
50 % 2 190 304
40 % 2 192 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 104 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 212 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 286
95 % 2 111 366
90 % 2 108 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 200 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 276
95 % 2 115 342
90 % 2 113 364
70 % 2 114 398
50 % 2 114 453
40 % 2 131 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 117 325
90 % 2 118 345
70 % 2 205 255
50 % 2 216 253
40 % 2 219 255
30 % 2 215 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 111 369
70 % 2 114 402
50 % 2 207 270
40 % 2 207 275
30 % 2 206 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 52 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 215 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 274
95 % 2 112 346
90 % 2 115 355
70 % 2 131 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 106 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 206 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 127 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 231 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 197 301
30 % 2 209 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 105 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 240 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 26 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 82 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 214 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 298
95 % 2 107 383
90 % 2 106 398
70 % 2 109 431
50 % 2 192 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 209 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 95 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 130 267
95 % 3 112 337
90 % 3 52 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 280
95 % 2 111 353
90 % 2 111 375
70 % 2 112 409
50 % 2 206 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 115 389
50 % 2 204 264
40 % 2 215 261
30 % 2 214 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 283
95 % 2 110 360
90 % 2 112 381
70 % 2 114 411
50 % 2 230 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 197 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 106 433
50 % 2 192 307
40 % 2 192 318
30 % 2 191 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 295
95 % 2 111 358
90 % 2 112 373
70 % 2 112 407
50 % 2 114 461
40 % 2 195 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 113 336
90 % 2 112 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 297
95 % 2 107 381
90 % 2 103 408
70 % 2 108 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 214 255
40 % 2 216 259
30 % 2 210 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 91 484
50 % 1 97 524
40 % 1 96 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 98 417
90 % 2 101 431
70 % 2 194 269
50 % 2 202 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 91 436
90 % 2 97 454
70 % 2 109 435
50 % 2 215 252
40 % 2 219 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 11 487
50 % 3 191 337
40 % 3 191 351
30 % 3 189 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 340
95 % 2 96 437
90 % 2 108 406
70 % 2 104 436
50 % 2 224 243
40 % 2 224 245
30 % 2 226 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 47 BI, DI 60S ribosomal protein L10 4932
2 4U4R 47 M0, m0 60S ribosomal protein L10 4932
3 4U3U 47 M0, m0 60S ribosomal protein L10 4932
4 5TBW 12 CL, r 60S ribosomal protein L10 4932
5 4U3M 47 M0, m0 60S ribosomal protein L10 4932
6 4U3N 47 M0, m0 60S ribosomal protein L10 4932
7 4U52 47 M0, m0 60S ribosomal protein L10 4932
8 4U4Q 47 M0, m0 60S ribosomal protein L10 4932
9 4U6F 47 M0, m0 60S ribosomal protein L10 4932
10 4U4U 47 M0, m0 60S ribosomal protein L10 4932
11 4U4Z 47 M0, m0 60S ribosomal protein L10 4932
12 4U4Y 47 M0, m0 60S ribosomal protein L10 4932
13 4U4N 47 M0, m0 60S ribosomal protein L10 4932
14 4U55 47 M0, m0 60S ribosomal protein L10 4932
15 5DAT 47 M0, m0 60S ribosomal protein L10 4932
16 5I4L 47 M0, m0 60S ribosomal protein L10 4932
17 4U51 47 M0, m0 60S ribosomal protein L10 4932
18 6HHQ 12 CL, r 60S ribosomal protein L10 4932
19 5OBM 12 M0, m0 60S ribosomal protein L10 4932
20 4U53 47 M0, m0 60S ribosomal protein L10 4932
21 5ON6 12 CL, r 60S ribosomal protein L10 4932
22 4U50 47 M0, m0 60S ribosomal protein L10 4932
23 5NDV 12 M0, m0 60S ribosomal protein L10 4932
24 5LYB 47 M0, m0 60S ribosomal protein L10 4932
25 4U56 47 M0, m0 60S ribosomal protein L10 4932
26 5TGA 47 M0, m0 60S ribosomal protein L10 4932
27 5MEI 12 CL, r 60S ribosomal protein L10 4932
28 5FCJ 47 M0, m0 60S ribosomal protein L10 4932
29 4U4O 47 M0, m0 60S ribosomal protein L10 4932
30 5DGV 47 M0, m0 60S ribosomal protein L10 4932
31 5DGE 47 M0, m0 60S ribosomal protein L10 4932
32 5NDW 35 M0, m0 60S ribosomal protein L10 4932
33 4V8P 29 BH, CH, EH, GH 60S RIBOSOMAL PROTEIN L10 5911
34 5NDG 47 M0, m0 60S ribosomal protein L10 4932
35 5FCI 47 M0, m0 60S ribosomal protein L10 4932
36 5DC3 47 M0, m0 60S ribosomal protein L10 4932
37 5DGF 47 M0, m0 60S ribosomal protein L10 4932
38 5TGM 47 M0, m0 60S ribosomal protein L10 4932
39 4V7R 41 BJ, DJ 60S ribosomal protein L10 4932
40 6ZMO 12 LI 60S ribosomal protein L10-like 9606
41 6ZME 12 LI 60S ribosomal protein L10-like 9606
42 6ZMI 12 LI 60S ribosomal protein L10-like 9606
43 6ZM7 12 LI 60S ribosomal protein L10-like 9606
44 6XIQ 9 I RPL10 isoform 1 4932
45 6XIR 9 I RPL10 isoform 1 4932
46 6Z6J 47 LI 60S ribosomal protein L10 4932
47 6Z6K 47 LI 60S ribosomal protein L10 4932
48 6Z6L 12 LI 60S ribosomal protein L10-like 9606
49 6Z6M 12 LI 60S ribosomal protein L10-like 9606
50 6Z6N 12 LI 60S ribosomal protein L10-like 9606
51 6WOO 12 I uL16 4932
52 6W6L 11 K 60S ribosomal protein L10 9606
53 6Y6X 12 LI 60S ribosomal protein L10-like 9606
54 6Y57 15 LI 60S ribosomal protein L10-like 9606
55 6Y2L 15 LI 60S ribosomal protein L10-like 9606
56 6Y0G 15 LI 60S ribosomal protein L10-like 9606
57 6LQM 16 J 60S ribosomal protein L10-like 9606
58 6TNU 49 BD 60S ribosomal protein L10 4932
59 6UZ7 12 AI KLLA0D05643p 28985
60 6TB3 49 BD 60S ribosomal protein L10 4932
61 6T83 45 Iy, La 60S ribosomal protein L10 4932
62 6T7T 45 LI 60S ribosomal protein L10 4932
63 6T7I 45 LI 60S ribosomal protein L10 4932
64 6T59 9 I3 60S ribosomal protein L10 9986
65 6T4Q 44 LI 60S ribosomal protein L10 4932
66 6SV4 12 BD, YD, ZD 60S ribosomal protein L10 4932
67 6SNT 45 p 60S ribosomal protein L10 4932
68 6SGC 44 I2 60S ribosomal protein L10 9986
69 6S47 12 AL 60S ribosomal protein L10 4932
70 6P5I 47 AI uL16 9986
71 6P5J 47 AI uL16 9986
72 6P5K 12 AI uL16 9986
73 6P5N 12 AI uL16 9986
74 6RM3 34 LI0 uL16 6039
75 6RI5 45 q 60S ribosomal protein L10 4932
76 6OM7 45 K 60S ribosomal protein L10 9606
77 6OLZ 14 AI 60S ribosomal protein L10 9606
78 6OM0 45 K 60S ribosomal protein L10 9606
79 6OLE 45 K 60S ribosomal protein L10 9606
80 6OLF 45 K 60S ribosomal protein L10 9606
81 6OLG 14 AI 60S ribosomal protein L10 9606
82 6OLI 45 K 60S ribosomal protein L10 9606
83 6R84 21 s 60S ribosomal protein L10 4932
84 6R86 20 s 60S ribosomal protein L10 4932
85 6R87 20 s 60S ribosomal protein L10 4932
86 6R7Q 37 I Ribosomal protein L10 (Predicted) 9986
87 6R6G 27 I Ribosomal protein L10 (Predicted) 9986
88 6R6P 12 I Ribosomal protein L10 (Predicted) 9986
89 6R5Q 15 I Ribosomal protein L10 (Predicted) 9986
90 6QZP 12 LI 60S ribosomal protein L10-like 9606
91 6QTZ 45 q 60S ribosomal protein L10 4932
92 6QT0 9 q 60S ribosomal protein L10 4932
93 6QKL 5 F 60S ribosomal protein L10 44689
94 6Q8Y 41 BD 60S ribosomal protein L10 4932
95 6N8O 17 Z 60S ribosomal protein L10 4932
96 6I7O 12 BD, YD 60S ribosomal protein L10 4932
97 6IP5 12 2D 60S ribosomal protein L10-like 9606
98 6IP6 12 2D 60S ribosomal protein L10-like 9606
99 6IP8 12 2D 60S ribosomal protein L10-like 9606
100 6MTB 15 I 60S ribosomal protein L10 9986
101 6MTC 13 I 60S ribosomal protein L10 9986
102 6MTD 12 I uL16 9986
103 6MTE 12 I uL16 9986
104 6HD7 47 s 60S ribosomal protein L10 4932
105 6HCQ 46 I3 60S ribosomal protein L10 9986
106 6HCJ 46 I3 60S ribosomal protein L10 9986
107 6HCM 85 I3 60S ribosomal protein L10 9986
108 6HCF 85 I3 60S ribosomal protein L10 9986
109 6GZ3 49 AI Ribosomal protein L10 (Predicted) 9986
110 6GZ4 49 AI ribosomal protein uL16 9986
111 6GZ5 49 AI ribosomal protein uL16 9986
112 6GQV 14 I 60S ribosomal protein L10 4932
113 6GQ1 14 I 60S ribosomal protein L10 4932
114 6GQB 14 I 60S ribosomal protein L10 4932
115 6D9J 9 I uL16 9986
116 6D90 9 I uL16 9986
117 6FTG 9 I Ribosomal protein L10 (Predicted) 9986
118 6FTI 9 I Ribosomal protein L10 (Predicted) 9986
119 6FTJ 9 I Ribosomal protein L10 (Predicted) 9986
120 6FRK 17 I Ribosomal protein uL16 9986
121 6EK0 12 LI 60S ribosomal protein L10-like 9606
122 6AZ3 14 N ribosomal protein uL16 5661
123 5XY3 12 I Ribosomal protein, putative 5722
124 5XXB 12 I Ribosomal protein uL16 5811
125 5UMD 17 Q 60S ribosomal protein L10, putative 5833
126 5MC6 70 BD 60S ribosomal protein L10 4932
127 5M1J 55 I5 60S ribosomal protein L10 4932
128 5LZS 9 I Ribosomal protein L10 (Predicted) 9986
129 5LZT 9 I uL16 9986
130 5LZU 9 I uL16 9986
131 5LZV 9 I uL16 9986
132 5LZW 9 I uL16 9986
133 5LZX 9 I Ribosomal protein L10 (Predicted) 9986
134 5LZY 9 I Ribosomal protein L10 (Predicted) 9986
135 5LZZ 9 I Ribosomal protein L10 (Predicted) 9986
136 5T62 13 L 60S ribosomal protein L10 4932
137 5T6R 12 L 60S ribosomal protein L10 4932
138 5T2A 10 J uL16 5661
139 5T2C 43 p 60S ribosomal protein L10-like 9606
140 5LKS 12 LI 60S ribosomal protein L10-like 9606
141 5JUO 14 N uL16 (yeast L10) 4932
142 5JUP 14 N uL16 (yeast L10) 4932
143 5JUS 14 N uL16 (yeast L10) 4932
144 5JUT 14 N uL16 (yeast L10) 4932
145 5JUU 14 N uL16 (yeast L10) 4932
146 5IT7 12 II KLLA0D05643p 28985
147 3JCS 22 N ribosomal protein L16 5661
148 5GAK 44 s 60S ribosomal protein L10 4932
149 5APN 12 I 60S ribosomal protein L10 4932
150 5APO 12 I 60S ribosomal protein L10 4932
151 3JBN 61 AQ 60S ribosomal protein uL16 5833
152 3JBO 61 AQ 60S ribosomal protein uL16 5833
153 3JBP 61 AQ 60S ribosomal protein uL16 5833
154 5AN9 6 F 60S RIBOSOMAL PROTEIN L10 44689
155 5ANB 6 F 60S RIBOSOMAL PROTEIN L10 44689
156 5ANC 6 F 60S RIBOSOMAL PROTEIN L10 44689
157 3JAN 39 I Ribosomal protein uL16 SEE REMARK 999 9986
158 3JAJ 39 I Ribosomal protein uL16 SEE REMARK 999 9986
159 3JAG 9 I uL16 9986
160 3JAH 9 I uL16 9986
161 3JAI 9 I uL16 9986
162 4UG0 12 LI 60S RIBOSOMAL PROTEIN L10-LIKE 9606
163 5AJ0 11 AI 60S ribosomal protein L10 9606
164 3J92 9 I uL16 9986
165 4D67 9 I 60S RIBOSOMAL PROTEIN L10 9986
166 4D5Y 9 I 60S RIBOSOMAL PROTEIN UL16 9986
167 3J7O 12 I Ribosomal protein uL16 9823
168 3J7P 12 I Ribosomal protein uL16 9823
169 3J7Q 12 I Ribosomal protein uL16 9823
170 3J7R 12 I Ribosomal protein uL16 9823
171 4UJC 15 BI 60S RIBOSOMAL PROTEIN L10 9986
172 4UJD 12 AI 60S RIBOSOMAL PROTEIN L10 9986
173 3J79 17 Q 60S ribosomal protein uL16 5833
174 3J77 10 60 60S ribosomal protein L10 4932
175 3J78 10 60 60S ribosomal protein L10 4932
176 3J6X 13 50 60S ribosomal protein L10 4932
177 3J6Y 13 50 60S ribosomal protein L10 4932
178 4UJE 46 CI 60S RIBOSOMAL PROTEIN L10 9986
179 4V91 12 I UL16 RIBOSOMAL PROTEIN UL16 28985
180 4V7E 75 CI 60S ribosomal protein L16 4565
181 4V8Y 43 BI 60S RIBOSOMAL PROTEIN L10 4932
182 4V8Z 43 BI 60S RIBOSOMAL PROTEIN L10 4932
183 4V6W 47 CI 60S ribosomal protein L10 7227
184 4V6X 47 CI 60S ribosomal protein L10-like 9606
185 4V8M 44 BK 60S RIBOSOMAL PROTEIN L10, PUTATIVE 185431
186 4V8T 9 I 60S RIBOSOMAL PROTEIN L10 4932
187 3J0Q 16 J Ribosomal protein L10 9986
188 3J0L 25 J Ribosomal protein L10 9986
189 4V6I 77 BI 60S ribosomal protein rpL10 (L10e) 4932
190 4V5Z 60 Bh 60S Ribosomal protein L10 9612