4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 413
95 % 2 70 529
90 % 2 76 512
70 % 2 93 461
50 % 2 191 256
40 % 2 195 257
30 % 2 195 273
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 351
95 % 2 80 459
90 % 2 92 432
70 % 2 186 251
50 % 2 201 235
40 % 2 209 235
30 % 2 209 247
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1561
95 % 2 65 620
90 % 2 68 627
70 % 2 84 536
50 % 2 84 567
40 % 2 84 607
30 % 2 84 624
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 364
95 % 2 78 473
90 % 2 90 437
70 % 2 95 449
50 % 2 198 240
40 % 2 198 249
30 % 2 198 264
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1144
95 % 2 51 775
90 % 2 53 776
70 % 2 85 505
50 % 2 85 533
40 % 2 88 560
30 % 2 88 586
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 356
95 % 2 78 465
90 % 2 90 442
70 % 2 195 241
50 % 2 198 242
40 % 2 206 238
30 % 2 207 249
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 350
95 % 2 92 414
90 % 2 92 429
70 % 2 199 228
50 % 2 200 237
40 % 2 200 248
30 % 2 200 262
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 536
95 % 2 68 546
90 % 2 68 574
70 % 2 86 499
50 % 2 181 294
40 % 2 189 287
30 % 2 189 304
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 353
95 % 2 91 416
90 % 2 92 430
70 % 2 92 462
50 % 2 192 250
40 % 2 200 247
30 % 2 201 261
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 420
95 % 2 70 531
90 % 2 82 492
70 % 2 82 519
50 % 2 178 295
40 % 2 178 306
30 % 2 178 330
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 610
95 % 2 51 787
90 % 2 51 824
70 % 2 59 771
50 % 2 68 712
40 % 2 133 405
30 % 2 133 418
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 376
95 % 2 76 477
90 % 2 88 453
70 % 2 185 252
50 % 2 194 246
40 % 2 204 241
30 % 2 204 252
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 382
95 % 2 74 495
90 % 2 74 521
70 % 2 86 496
50 % 2 176 304
40 % 2 176 316
30 % 2 180 314
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 384
95 % 2 74 490
90 % 2 74 516
70 % 2 86 491
50 % 2 86 525
40 % 2 88 539
30 % 2 88 566
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 389
95 % 2 73 501
90 % 2 85 473
70 % 2 85 501
50 % 2 172 315
40 % 2 172 328
30 % 2 172 346
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 359
95 % 2 94 412
90 % 2 94 428
70 % 2 202 231
50 % 3 213 221
40 % 3 213 231
30 % 38 809 22
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 369
95 % 2 90 419
90 % 2 90 436
70 % 2 205 222
50 % 2 215 217
40 % 2 215 228
30 % 2 215 237
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 368
95 % 2 78 476
90 % 2 90 447
70 % 2 90 474
50 % 2 193 263
40 % 2 193 277
30 % 2 193 291
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 597
95 % 2 50 796
90 % 2 50 832
70 % 2 58 772
50 % 2 58 803
40 % 2 58 839
30 % 2 60 865
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 570
95 % 1 47 762
90 % 1 51 765
70 % 1 51 788
50 % 1 86 545
40 % 1 86 585
30 % 1 86 606
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 378
95 % 2 87 437
90 % 2 87 461
70 % 2 176 269
50 % 2 188 264
40 % 2 188 278
30 % 2 188 292
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 390
95 % 2 74 499
90 % 2 84 480
70 % 2 91 471
50 % 2 97 472
40 % 2 162 337
30 % 2 162 356
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 644
95 % 2 90 425
90 % 2 90 446
70 % 2 193 246
50 % 2 204 228
40 % 2 205 239
30 % 2 205 251
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 388
95 % 2 72 505
90 % 2 73 527
70 % 2 171 279
50 % 2 179 298
40 % 2 179 311
30 % 2 179 332
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 374
95 % 2 95 482
90 % 2 107 458
70 % 2 107 485
50 % 2 172 357
40 % 2 172 371
30 % 2 172 387
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 777
95 % 1 43 964
90 % 1 43 990
70 % 1 80 613
50 % 1 84 610
40 % 1 84 655
30 % 1 84 672
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 400
95 % 3 77 452
90 % 3 77 481
70 % 3 77 509
50 % 5 178 276
40 % 5 184 266
30 % 5 185 278
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1060
95 % 1 27 1380
90 % 1 27 1426
70 % 3 33 1241
50 % 3 33 1288
40 % 3 33 1323
30 % 3 33 1364
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 295
95 % 2 97 388
90 % 2 99 396
70 % 2 174 280
50 % 2 187 277
40 % 47 258 200
30 % 47 258 212
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 587
95 % 2 51 793
90 % 2 51 828
70 % 2 59 770
50 % 2 66 738
40 % 2 66 771
30 % 2 66 813
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 289
95 % 2 103 354
90 % 2 105 361
70 % 2 105 400
50 % 2 198 251
40 % 2 198 261
30 % 2 200 271
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 266
95 % 2 107 331
90 % 2 107 350
70 % 2 109 385
50 % 2 157 344
40 % 2 198 263
30 % 2 198 279
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 317
95 % 2 95 401
90 % 2 95 420
70 % 2 97 439
50 % 2 183 290
40 % 2 185 293
30 % 2 185 315
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 293
95 % 2 102 358
90 % 2 103 370
70 % 2 106 393
50 % 2 107 447
40 % 2 111 459
30 % 2 111 477
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 270
95 % 2 103 350
90 % 2 103 371
70 % 2 105 398
50 % 2 185 281
40 % 2 185 298
30 % 2 184 323
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 321
95 % 2 106 356
90 % 2 106 375
70 % 2 108 401
50 % 2 169 327
40 % 2 171 335
30 % 2 171 354
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 271
95 % 2 102 359
90 % 2 102 377
70 % 2 104 405
50 % 2 193 272
40 % 2 195 274
30 % 47 266 205
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 345
95 % 2 83 449
90 % 2 85 471
70 % 2 85 498
50 % 2 176 309
40 % 2 176 322
30 % 2 176 339
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1147
95 % 2 98 387
90 % 2 100 394
70 % 3 186 259
50 % 3 190 271
40 % 3 190 284
30 % 3 190 300
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 282
95 % 2 101 373
90 % 2 101 393
70 % 2 103 414
50 % 2 103 465
40 % 2 183 305
30 % 2 183 328
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 386
95 % 3 72 503
90 % 3 72 533
70 % 3 84 502
50 % 3 170 317
40 % 3 170 330
30 % 3 170 349
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 269
95 % 2 103 357
90 % 2 103 376
70 % 2 105 404
50 % 2 105 459
40 % 2 105 487
30 % 2 105 505
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 262
95 % 2 108 330
90 % 2 108 348
70 % 2 183 266
50 % 2 197 254
40 % 2 197 268
30 % 2 197 283
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 307
95 % 2 95 403
90 % 2 102 380
70 % 2 104 407
50 % 2 105 458
40 % 2 106 484
30 % 2 106 502
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 257
95 % 2 106 334
90 % 2 108 342
70 % 2 108 389
50 % 2 195 259
40 % 2 195 272
30 % 2 195 288
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 268
95 % 2 103 355
90 % 2 105 363
70 % 2 105 403
50 % 2 186 287
40 % 2 191 289
30 % 2 191 311
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 297
95 % 2 97 391
90 % 2 97 408
70 % 2 100 421
50 % 2 185 285
40 % 2 186 296
30 % 2 186 320
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 283
95 % 2 101 377
90 % 2 103 383
70 % 2 103 416
50 % 2 176 318
40 % 2 177 324
30 % 2 178 337
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 294
95 % 2 97 390
90 % 2 99 400
70 % 2 99 428
50 % 2 175 316
40 % 2 181 317
30 % 2 188 309
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 464
95 % 2 72 606
90 % 2 72 635
70 % 2 73 657
50 % 2 73 685
40 % 2 73 723
30 % 2 74 722
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 265
95 % 2 104 348
90 % 2 106 353
70 % 2 197 240
50 % 2 198 252
40 % 2 198 262
30 % 2 198 277
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 371
95 % 2 77 478
90 % 2 89 456
70 % 2 182 262
50 % 2 192 253
40 % 2 192 265
30 % 2 200 263
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 483
95 % 2 66 629
90 % 2 66 660
70 % 2 67 678
50 % 2 67 716
40 % 2 114 491
30 % 2 114 512
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 434
95 % 2 77 560
90 % 2 78 581
70 % 2 78 601
50 % 2 78 635
40 % 2 80 660
30 % 2 81 671
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 250
95 % 2 108 322
90 % 2 110 334
70 % 2 110 382
50 % 2 193 265
40 % 2 193 279
30 % 2 193 293
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 304
95 % 2 97 396
90 % 2 99 404
70 % 2 99 436
50 % 2 171 325
40 % 2 184 299
30 % 2 186 316
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 309
95 % 2 98 383
90 % 2 100 391
70 % 2 100 420
50 % 2 188 275
40 % 2 189 288
30 % 2 191 299
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 330
95 % 2 89 434
90 % 2 91 444
70 % 2 91 472
50 % 2 91 508
40 % 2 91 548
30 % 2 91 576
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 263
95 % 3 103 346
90 % 3 105 352
70 % 3 105 395
50 % 3 146 361
40 % 3 146 375
30 % 3 146 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 275
95 % 2 101 369
90 % 2 101 388
70 % 2 103 410
50 % 2 185 282
40 % 2 185 295
30 % 2 185 319
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 264
95 % 2 104 347
90 % 2 104 368
70 % 2 106 396
50 % 2 189 274
40 % 2 193 280
30 % 2 194 290
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 274
95 % 2 102 366
90 % 2 102 384
70 % 2 104 411
50 % 2 181 307
40 % 2 183 313
30 % 2 183 334
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 357
95 % 2 79 463
90 % 2 91 433
70 % 2 91 463
50 % 2 203 229
40 % 2 203 242
30 % 2 203 256
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 300
95 % 2 97 393
90 % 2 97 410
70 % 2 99 430
50 % 2 170 326
40 % 2 170 338
30 % 2 170 358
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 253
95 % 2 107 328
90 % 2 107 346
70 % 2 109 384
50 % 2 188 280
40 % 2 199 259
30 % 2 201 270
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 299
95 % 2 102 370
90 % 2 102 389
70 % 2 104 413
50 % 2 104 463
40 % 2 178 320
30 % 2 188 312
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 261
95 % 2 104 345
90 % 2 104 366
70 % 2 148 309
50 % 2 193 266
40 % 2 193 282
30 % 2 193 295
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 305
95 % 2 97 399
90 % 2 97 416
70 % 2 99 438
50 % 2 99 486
40 % 2 106 474
30 % 2 106 495
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 277
95 % 2 101 368
90 % 2 101 386
70 % 2 177 275
50 % 2 189 273
40 % 2 191 283
30 % 2 192 297
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 553
95 % 1 50 737
90 % 1 50 775
70 % 1 96 469
50 % 1 96 506
40 % 1 96 543
30 % 1 96 571
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 348
95 % 2 81 461
90 % 2 81 491
70 % 2 164 284
50 % 2 164 329
40 % 2 164 341
30 % 2 164 361
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 308
95 % 2 94 407
90 % 2 96 411
70 % 2 169 282
50 % 2 181 299
40 % 2 181 308
30 % 2 182 329
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 310
95 % 2 94 405
90 % 2 94 423
70 % 2 96 443
50 % 2 184 283
40 % 2 185 294
30 % 23 208 258
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 377
95 % 2 77 486
90 % 2 77 510
70 % 2 89 488
50 % 2 183 288
40 % 2 188 290
30 % 2 188 310
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 374
95 % 3 95 482
90 % 3 107 458
70 % 3 107 485
50 % 3 172 357
40 % 3 172 371
30 % 3 172 387
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54536
95 % 1 43 1537
90 % 2 47 1440
70 % 2 48 1446
50 % 2 69 1018
40 % 2 69 1038
30 % 2 69 1091
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 375
95 % 2 76 483
90 % 2 88 457
70 % 2 88 484
50 % 2 189 269
40 % 2 189 286
30 % 2 192 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 49 BL, DL 60S ribosomal protein L13-A 4932
2 4U4R 49 M3, m3 60S ribosomal protein L13-A 4932
3 4U3U 49 M3, m3 60S ribosomal protein L13-A 4932
4 5TBW 14 CN, t 60S ribosomal protein L13-A 4932
5 4U3M 49 M3, m3 60S ribosomal protein L13-A 4932
6 4U3N 49 M3, m3 60S ribosomal protein L13-A 4932
7 4U52 49 M3, m3 60S ribosomal protein L13-A 4932
8 4U4Q 49 M3, m3 60S ribosomal protein L13-A 4932
9 4U6F 49 M3, m3 60S ribosomal protein L13-A 4932
10 4U4U 49 M3, m3 60S ribosomal protein L13-A 4932
11 4U4Z 49 M3, m3 60S ribosomal protein L13-A 4932
12 4U4Y 49 M3, m3 60S ribosomal protein L13-A 4932
13 4U4N 49 M3, m3 60S ribosomal protein L13-A 4932
14 4U55 49 M3, m3 60S ribosomal protein L13-A 4932
15 5DAT 49 M3, m3 60S ribosomal protein L13-A 4932
16 5I4L 49 M3, m3 60S ribosomal protein L13-A 4932
17 4U51 49 M3, m3 60S ribosomal protein L13-A 4932
18 6HHQ 14 CN, t 60S ribosomal protein L13-A 4932
19 5OBM 14 M3, m3 60S ribosomal protein L13-A 4932
20 4U53 49 M3, m3 60S ribosomal protein L13-A 4932
21 5ON6 14 CN, t 60S ribosomal protein L13-A 4932
22 4U50 49 M3, m3 60S ribosomal protein L13-A 4932
23 5NDV 14 M3, m3 60S ribosomal protein L13-A 4932
24 5LYB 49 M3, m3 60S ribosomal protein L13-A 4932
25 4U56 49 M3, m3 60S ribosomal protein L13-A 4932
26 5TGA 49 M3, m3 60S ribosomal protein L13-A 4932
27 5MEI 14 CN, t 60S ribosomal protein L13-A 4932
28 5FCJ 49 M3, m3 60S ribosomal protein L13-A 4932
29 4U4O 49 M3, m3 60S ribosomal protein L13-A 4932
30 5DGV 49 M3, m3 60S ribosomal protein L13-A 4932
31 5DGE 49 M3, m3 60S ribosomal protein L13-A 4932
32 5NDW 37 M3, m3 60S ribosomal protein L13-A 4932
33 4V8P 18 AU, DU, FU, HU RPL13 5911
34 5NDG 49 M3, m3 60S ribosomal protein L13-A 4932
35 5FCI 49 M3, m3 60S ribosomal protein L13-A 4932
36 5DC3 49 M3, m3 60S ribosomal protein L13-A 4932
37 5DGF 49 M3, m3 60S ribosomal protein L13-A 4932
38 5TGM 49 M3, m3 60S ribosomal protein L13-A 4932
39 6Y6X 14 LL 60S ribosomal protein L13 9606
40 6Y57 17 LL 60S ribosomal protein L13 9606
41 6Y2L 17 LL 60S ribosomal protein L13 9606
42 6Y0G 17 LL 60S ribosomal protein L13 9606
43 6TNU 51 AJ 60S ribosomal protein L13-A 4932
44 6UZ7 14 AL 60S ribosomal protein L13 28985
45 6TB3 51 AJ 60S ribosomal protein L13-A 4932
46 6T83 47 Ly, Na 60S ribosomal protein L13-A 4932
47 6T7T 47 LL 60S ribosomal protein L13-A 4932
48 6T7I 47 LL 60S ribosomal protein L13-A 4932
49 6T59 11 L3 eL13 9986
50 6T4Q 46 LL 60S ribosomal protein L13-A 4932
51 6SV4 14 AJ, XJ, zJ 60S ribosomal protein L13-A 4932
52 6SNT 47 r 60S ribosomal protein L13-A 4932
53 6SGC 46 L2 eL13 9986
54 6S47 14 AN 60S ribosomal protein L13-A 4932
55 6RZZ 10 K 60S ribosomal protein L13-A 4932
56 6S05 10 K 60S ribosomal protein L13-A 4932
57 6P5I 49 AL eL13 9986
58 6P5J 49 AL eL13 9986
59 6P5K 14 AL eL13 9986
60 6P5N 14 AL eL13 9986
61 6RI5 10 K 60S ribosomal protein L13-A 4932
62 6OM7 47 M 60S ribosomal protein L13 9606
63 6OLZ 16 AL 60S ribosomal protein L13 9606
64 6OM0 47 M 60S ribosomal protein L13 9606
65 6OLE 47 M 60S ribosomal protein L13 9606
66 6OLF 47 M 60S ribosomal protein L13 9606
67 6OLG 17 AL 60S ribosomal protein L13 9606
68 6OLI 47 M 60S ribosomal protein L13 9606
69 6R84 13 N 60S ribosomal protein L13-A 4932
70 6R86 12 N 60S ribosomal protein L13-A 4932
71 6R87 12 N 60S ribosomal protein L13-A 4932
72 6R7Q 40 L 60S ribosomal protein L13 9986
73 6R6G 33 L 60S ribosomal protein L13 9986
74 6R6P 14 L 60S ribosomal protein L13 9986
75 6R5Q 17 L 60S ribosomal protein L13 9986
76 6QZP 14 LL 60S ribosomal protein L13 9606
77 6QTZ 10 K 60S ribosomal protein L13-A 4932
78 6QT0 11 K 60S ribosomal protein L13-A 4932
79 6QIK 10 K 60S ribosomal protein L13-A 4932
80 6Q8Y 11 AJ 60S ribosomal protein L13-A 4932
81 6N8J 23 L 60S ribosomal protein L13-A 4932
82 6N8K 22 L 60S ribosomal protein L13-A 4932
83 6N8L 22 L 60S ribosomal protein L13-A 4932
84 6N8M 14 N 60S ribosomal protein L13-A 4932
85 6N8N 17 N 60S ribosomal protein L13-A 4932
86 6N8O 19 N 60S ribosomal protein L13-A 4932
87 6I7O 14 AJ, XJ 60S ribosomal protein L13-A 4932
88 6IP5 14 2F 60S ribosomal protein L13 9606
89 6IP6 14 2F 60S ribosomal protein L13 9606
90 6IP8 14 2F 60S ribosomal protein L13 9606
91 6MTB 17 L 60S ribosomal protein L13 9986
92 6MTC 15 L 60S ribosomal protein L13 9986
93 6MTD 14 L eL13 9986
94 6MTE 14 L eL13 9986
95 6HD7 17 N 60S ribosomal protein L13-A 4932
96 6HCQ 48 L3 eL13 9986
97 6HCJ 48 L3 eL13 9986
98 6HCM 46 L3 eL13 9986
99 6HCF 46 L3 eL13 9986
100 6GZ3 51 AL ribosomal protein eL13 9986
101 6GZ4 51 AL ribosomal protein eL13 9986
102 6GZ5 51 AL ribosomal protein eL13 9986
103 6GQV 16 L 60S ribosomal protein L13-A 4932
104 6GQ1 16 L 60S ribosomal protein L13-A 4932
105 6GQB 16 L 60S ribosomal protein L13-A 4932
106 6D9J 11 L eL13 9986
107 6D90 11 L eL13 9986
108 6FTG 11 L eL13 9986
109 6FTI 11 L eL13 9986
110 6FTJ 11 L eL13 9986
111 6FT6 12 L 60S ribosomal protein L13-A 4932
112 6FRK 19 L Ribosomal protein eL13 9986
113 6CB1 12 L 60S ribosomal protein L13-A 4932
114 5Z3G 16 P 60S ribosomal protein L13-A 4932
115 6C0F 13 L 60S ribosomal protein L13-A 4932
116 6EM1 26 L 60S ribosomal protein L13-A 4932
117 6EM3 17 L 60S ribosomal protein L13-A Backbone model 4932
118 6EM4 20 L 60S ribosomal protein L13-A Backbone model 4932
119 6EM5 3 L 60S ribosomal protein L13-A Backbone model 4932
120 6ELZ 4 L 60S ribosomal protein L13-A 4932
121 6EK0 14 LL 60S ribosomal protein L13 9606
122 6AZ3 9 I ribosomal protein eL13 5661
123 5XY3 14 L Ribosomal protein L13e, putative 5722
124 5MC6 50 AJ 60S ribosomal protein L13-A 4932
125 5H4P 13 L 60S ribosomal protein L13-A 4932
126 5M1J 60 L5 60S ribosomal protein L13-A 4932
127 5LZS 11 L eL13 9986
128 5LZT 11 L eL13 9986
129 5LZU 11 L eL13 9986
130 5LZV 11 L eL13 9986
131 5LZW 11 L eL13 9986
132 5LZX 11 L eL13 9986
133 5LZY 11 L eL13 9986
134 5LZZ 11 L eL13 9986
135 5T62 15 N 60S ribosomal protein L13-A 4932
136 5T6R 14 N 60S ribosomal protein L13-A 4932
137 5T5H 11 N 60S ribosomal protein L13 5693
138 5T2A 12 L eL13 5661
139 5T2C 36 r 60S ribosomal protein L13 9606
140 5LKS 14 LL 60S ribosomal protein L13 9606
141 5JUO 17 Q eL13 (yeast L13) 4932
142 5JUP 17 Q eL13 (yeast L13) 4932
143 5JUS 17 Q eL13 (yeast L13) 4932
144 5JUT 17 Q eL13 (yeast L13) 4932
145 5JUU 17 Q eL13 (yeast L13) 4932
146 5JCS 23 L 60S ribosomal protein L13-A 4932
147 5IT7 14 LL 60S ribosomal protein L13 28985
148 3JCT 12 L 60S ribosomal protein L13-A 4932
149 3JCS 17 I ribosomal protein L13e 5661
150 5GAK 33 N 60S ribosomal protein L13-A 4932
151 5FL8 12 L 60S ribosomal protein L13-A 4932
152 5APN 14 L 60S ribosomal protein L13-A 4932
153 5APO 14 L 60S ribosomal protein L13-A 4932
154 3JAN 6 L Ribosomal protein eL13 SEE REMARK 999 9986
155 3JAJ 6 L Ribosomal protein eL13 SEE REMARK 999 9986
156 3JAG 11 L eL13 9986
157 3JAH 11 L eL13 9986
158 3JAI 11 L eL13 9986
159 4UG0 14 LL 60S RIBOSOMAL PROTEIN L13 9606
160 5AJ0 14 AL 60S ribosomal protein L13 9606
161 3J92 11 L eL13 9986
162 4D67 11 L 60S RIBOSOMAL PROTEIN L13 9986
163 4D5Y 11 L 60S RIBOSOMAL PROTEIN EL13 9986
164 3J7O 14 L Ribosomal protein eL13 9823
165 3J7P 15 L Ribosomal protein eL13 9823
166 3J7Q 14 L Ribosomal protein eL13 9823
167 3J7R 14 L Ribosomal protein eL13 9823
168 4UJC 17 BL 60S RIBOSOMAL PROTEIN L13 9986
169 4UJD 14 AL 60S RIBOSOMAL PROTEIN L13 9986
170 3J77 13 63 60S ribosomal protein L13 4932
171 3J78 13 63 60S ribosomal protein L13 4932
172 3J6X 15 53 60S ribosomal protein L13 4932
173 3J6Y 15 53 60S ribosomal protein L13 4932
174 4UJE 48 CL 60S RIBOSOMAL PROTEIN L13 9986
175 4V91 14 L EL13 RIBOSOMAL PROTEIN EL13 28985
176 4V7F 14 K 60S ribosomal protein L13 4932
177 4V7E 78 CL 60S ribosomal protein L13E 4565
178 4V8Y 46 BL 60S RIBOSOMAL PROTEIN L13-A 4932
179 4V8Z 46 BL 60S RIBOSOMAL PROTEIN L13-A 4932
180 4V6W 42 CL 60S ribosomal protein L13 7227
181 4V6X 42 CL 60S ribosomal protein L13 9606
182 4V8M 47 BN 60S RIBOSOMAL PROTEIN L13 185431
183 4V8T 12 L 60S RIBOSOMAL PROTEIN L13-A 4932