4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 412
95 % 2 70 528
90 % 2 76 510
70 % 2 93 460
50 % 2 190 260
40 % 2 194 260
30 % 2 194 272
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 350
95 % 2 80 459
90 % 2 92 428
70 % 2 185 250
50 % 2 200 236
40 % 2 208 236
30 % 2 208 246
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1547
95 % 2 65 614
90 % 2 68 624
70 % 2 84 537
50 % 2 84 564
40 % 2 84 604
30 % 2 84 621
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 358
95 % 2 78 471
90 % 2 90 438
70 % 2 95 449
50 % 2 197 244
40 % 2 197 253
30 % 2 197 264
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1147
95 % 2 51 774
90 % 2 53 771
70 % 2 85 506
50 % 2 85 533
40 % 2 88 559
30 % 2 88 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 362
95 % 2 78 472
90 % 2 90 441
70 % 2 190 248
50 % 2 197 246
40 % 2 205 239
30 % 2 206 248
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 349
95 % 2 92 413
90 % 2 92 427
70 % 2 198 227
50 % 2 199 238
40 % 2 199 247
30 % 2 199 259
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 533
95 % 2 68 548
90 % 2 68 576
70 % 2 86 499
50 % 2 179 302
40 % 2 187 286
30 % 2 187 304
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 348
95 % 2 91 416
90 % 2 92 430
70 % 2 92 461
50 % 2 190 253
40 % 2 198 249
30 % 2 199 260
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 415
95 % 2 70 531
90 % 2 82 491
70 % 2 82 518
50 % 2 176 304
40 % 2 176 310
30 % 2 176 327
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 606
95 % 2 51 787
90 % 2 51 820
70 % 2 59 759
50 % 2 68 715
40 % 2 133 403
30 % 2 133 414
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 371
95 % 2 76 479
90 % 2 88 452
70 % 2 183 254
50 % 2 192 252
40 % 2 202 242
30 % 2 202 255
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 375
95 % 2 74 488
90 % 2 74 515
70 % 2 86 492
50 % 2 87 519
40 % 2 87 554
30 % 2 88 574
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 381
95 % 2 74 494
90 % 2 74 523
70 % 2 86 496
50 % 2 86 525
40 % 2 88 537
30 % 2 88 564
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 386
95 % 2 73 501
90 % 2 85 473
70 % 2 85 501
50 % 2 171 317
40 % 2 171 327
30 % 2 171 341
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 364
95 % 2 94 411
90 % 2 94 425
70 % 2 201 234
50 % 2 203 231
40 % 3 212 230
30 % 38 808 23
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 366
95 % 2 90 421
90 % 2 90 435
70 % 2 204 222
50 % 2 214 221
40 % 2 214 227
30 % 2 214 235
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 365
95 % 2 78 476
90 % 2 90 446
70 % 2 90 474
50 % 2 192 267
40 % 2 192 280
30 % 2 192 292
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 590
95 % 2 50 796
90 % 2 50 831
70 % 2 58 775
50 % 2 58 807
40 % 2 58 837
30 % 2 60 857
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 570
95 % 1 47 762
90 % 1 51 757
70 % 1 51 779
50 % 1 85 552
40 % 1 85 591
30 % 1 85 608
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 378
95 % 2 87 441
90 % 2 87 468
70 % 2 175 270
50 % 2 187 268
40 % 2 187 281
30 % 2 187 295
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 384
95 % 2 74 499
90 % 2 84 478
70 % 2 91 470
50 % 2 97 470
40 % 2 161 336
30 % 2 161 355
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 632
95 % 2 90 419
90 % 2 90 436
70 % 2 191 247
50 % 2 202 232
40 % 2 203 241
30 % 2 203 252
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 383
95 % 2 72 504
90 % 2 73 528
70 % 2 168 281
50 % 2 176 294
40 % 2 176 305
30 % 2 176 325
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 370
95 % 2 95 481
90 % 2 107 456
70 % 2 107 484
50 % 2 171 360
40 % 2 171 371
30 % 2 171 385
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 774
95 % 1 43 949
90 % 1 43 982
70 % 1 78 627
50 % 1 82 628
40 % 1 82 667
30 % 1 82 685
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 394
95 % 3 77 452
90 % 3 77 481
70 % 3 77 508
50 % 5 176 280
40 % 5 182 271
30 % 5 183 283
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1033
95 % 1 27 1370
90 % 1 27 1410
70 % 3 33 1227
50 % 3 33 1278
40 % 3 33 1315
30 % 3 33 1349
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 292
95 % 2 97 392
90 % 2 99 397
70 % 2 174 278
50 % 2 187 277
40 % 47 258 200
30 % 47 258 210
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 581
95 % 2 51 785
90 % 2 51 819
70 % 2 59 761
50 % 2 66 732
40 % 2 66 760
30 % 2 66 800
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 288
95 % 2 103 355
90 % 2 105 362
70 % 2 105 402
50 % 2 198 250
40 % 2 198 262
30 % 2 200 269
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 270
95 % 2 107 329
90 % 2 107 346
70 % 2 109 385
50 % 2 157 345
40 % 2 198 263
30 % 2 198 275
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 316
95 % 2 95 405
90 % 2 95 421
70 % 2 97 442
50 % 2 183 290
40 % 2 185 292
30 % 2 185 311
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 298
95 % 2 102 356
90 % 2 103 369
70 % 2 106 393
50 % 2 107 444
40 % 2 111 456
30 % 2 111 474
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 267
95 % 2 103 352
90 % 2 103 371
70 % 2 105 398
50 % 2 185 284
40 % 2 185 295
30 % 2 184 319
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 106 350
90 % 2 106 375
70 % 2 108 397
50 % 2 169 328
40 % 2 171 333
30 % 2 171 350
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 272
95 % 2 102 357
90 % 2 102 378
70 % 2 104 405
50 % 2 193 270
40 % 47 265 193
30 % 47 266 203
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 341
95 % 2 83 449
90 % 2 85 470
70 % 2 85 498
50 % 2 176 310
40 % 2 176 319
30 % 2 176 334
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1157
95 % 2 98 385
90 % 2 100 392
70 % 3 186 257
50 % 3 190 271
40 % 3 190 283
30 % 3 190 298
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 280
95 % 2 101 372
90 % 2 101 390
70 % 2 103 412
50 % 2 103 462
40 % 2 183 303
30 % 2 183 324
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 387
95 % 3 72 505
90 % 3 72 534
70 % 3 84 503
50 % 3 168 323
40 % 3 168 332
30 % 3 168 349
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 268
95 % 2 103 354
90 % 2 103 372
70 % 2 105 399
50 % 2 105 456
40 % 2 105 484
30 % 2 105 501
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 262
95 % 2 108 328
90 % 2 108 345
70 % 2 183 265
50 % 2 197 256
40 % 2 197 267
30 % 2 197 281
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 305
95 % 2 95 402
90 % 2 102 377
70 % 2 104 404
50 % 2 185 281
40 % 2 186 291
30 % 2 186 309
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 256
95 % 2 106 334
90 % 2 108 340
70 % 2 108 389
50 % 2 195 259
40 % 2 195 272
30 % 2 195 285
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 266
95 % 2 103 349
90 % 2 105 355
70 % 2 105 396
50 % 2 186 289
40 % 2 191 287
30 % 2 191 305
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 293
95 % 2 97 391
90 % 2 97 408
70 % 2 100 419
50 % 2 185 286
40 % 2 186 297
30 % 2 186 312
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 283
95 % 2 101 377
90 % 2 103 382
70 % 2 103 414
50 % 2 176 319
40 % 2 177 320
30 % 2 178 332
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 295
95 % 2 97 389
90 % 2 99 398
70 % 2 99 423
50 % 2 175 318
40 % 2 181 315
30 % 2 188 303
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 456
95 % 2 72 597
90 % 2 72 629
70 % 2 73 650
50 % 2 73 683
40 % 2 73 715
30 % 2 74 717
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 263
95 % 2 104 346
90 % 2 106 353
70 % 2 197 240
50 % 2 198 251
40 % 2 198 264
30 % 2 198 274
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 368
95 % 2 77 480
90 % 2 89 455
70 % 2 181 261
50 % 2 191 255
40 % 2 195 258
30 % 2 204 254
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 477
95 % 2 66 627
90 % 2 66 654
70 % 2 67 680
50 % 2 67 720
40 % 2 114 489
30 % 2 114 511
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 425
95 % 2 77 556
90 % 2 78 573
70 % 2 78 599
50 % 2 78 638
40 % 2 80 655
30 % 2 81 669
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 249
95 % 2 108 324
90 % 2 110 335
70 % 2 110 381
50 % 2 193 266
40 % 2 193 278
30 % 2 193 291
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 302
95 % 2 97 397
90 % 2 99 403
70 % 2 99 435
50 % 2 171 326
40 % 2 184 298
30 % 2 186 314
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 309
95 % 2 98 387
90 % 2 100 393
70 % 2 100 418
50 % 2 188 275
40 % 2 189 284
30 % 2 191 296
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 329
95 % 2 89 432
90 % 2 91 440
70 % 2 91 466
50 % 2 91 505
40 % 2 91 540
30 % 2 91 566
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 261
95 % 3 103 341
90 % 3 105 351
70 % 3 105 392
50 % 3 146 363
40 % 3 146 374
30 % 3 146 388
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 276
95 % 2 101 364
90 % 2 101 385
70 % 2 103 410
50 % 2 185 283
40 % 2 185 296
30 % 2 185 316
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 265
95 % 2 104 348
90 % 2 104 368
70 % 2 106 395
50 % 2 189 274
40 % 2 193 279
30 % 2 194 287
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 274
95 % 2 102 362
90 % 2 102 383
70 % 2 104 408
50 % 2 181 308
40 % 2 183 311
30 % 2 183 328
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 361
95 % 2 79 462
90 % 2 91 432
70 % 2 91 462
50 % 2 201 234
40 % 2 201 244
30 % 2 201 258
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 300
95 % 2 97 400
90 % 2 97 412
70 % 2 99 430
50 % 2 170 329
40 % 2 170 335
30 % 2 170 354
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 253
95 % 2 107 330
90 % 2 107 347
70 % 2 109 387
50 % 2 188 282
40 % 2 199 261
30 % 2 201 268
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 294
95 % 2 102 365
90 % 2 102 386
70 % 2 104 411
50 % 2 104 461
40 % 2 178 316
30 % 2 178 331
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 264
95 % 2 104 343
90 % 2 104 366
70 % 2 148 306
50 % 2 193 264
40 % 2 193 276
30 % 2 193 289
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 303
95 % 2 97 401
90 % 2 97 416
70 % 2 99 437
50 % 2 99 484
40 % 2 106 472
30 % 2 106 493
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 278
95 % 2 101 363
90 % 2 101 384
70 % 2 176 276
50 % 2 189 273
40 % 2 191 282
30 % 2 192 294
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 543
95 % 1 50 730
90 % 1 50 766
70 % 1 96 467
50 % 1 96 506
40 % 1 96 541
30 % 1 96 567
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 346
95 % 2 81 460
90 % 2 81 490
70 % 2 163 284
50 % 2 163 334
40 % 2 163 344
30 % 2 163 361
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 307
95 % 2 94 408
90 % 2 96 410
70 % 2 174 279
50 % 2 181 298
40 % 2 182 306
30 % 2 182 326
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 308
95 % 2 94 406
90 % 2 94 422
70 % 2 96 444
50 % 2 184 285
40 % 2 185 293
30 % 23 208 256
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 374
95 % 2 77 485
90 % 2 77 509
70 % 2 89 489
50 % 2 182 296
40 % 2 187 289
30 % 2 187 306
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 370
95 % 3 95 481
90 % 3 107 456
70 % 3 107 484
50 % 3 171 360
40 % 3 171 371
30 % 3 171 385
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54937
95 % 1 43 1535
90 % 2 47 1454
70 % 2 48 1448
50 % 2 69 1016
40 % 2 69 1043
30 % 2 69 1093
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 372
95 % 2 76 483
90 % 2 88 460
70 % 2 88 485
50 % 2 188 272
40 % 2 188 285
30 % 2 191 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 52 BO, DO 60S ribosomal protein L16-A, 60S ribosomal protein L16-B 4932
2 4U4R 52 M6, m6 60S ribosomal protein L16-A 4932
3 4U3U 52 M6, m6 60S ribosomal protein L16-A 4932
4 5TBW 17 CQ, w 60S ribosomal protein L16-A 4932
5 4U3M 52 M6, m6 60S ribosomal protein L16-A 4932
6 4U3N 52 M6, m6 60S ribosomal protein L16-A 4932
7 4U52 52 M6, m6 60S ribosomal protein L16-A 4932
8 4U4Q 52 M6, m6 60S ribosomal protein L16-A 4932
9 4U6F 52 M6, m6 60S ribosomal protein L16-A 4932
10 4U4U 52 M6, m6 60S ribosomal protein L16-A 4932
11 4U4Z 52 M6, m6 60S ribosomal protein L16-A 4932
12 4U4Y 52 M6, m6 60S ribosomal protein L16-A 4932
13 4U4N 52 M6, m6 60S ribosomal protein L16-A 4932
14 4U55 52 M6, m6 60S ribosomal protein L16-A 4932
15 5DAT 52 M6, m6 60S ribosomal protein L16-A 4932
16 5I4L 52 M6, m6 60S ribosomal protein L16-A 4932
17 4U51 52 M6, m6 60S ribosomal protein L16-A 4932
18 6HHQ 17 CQ, w 60S ribosomal protein L16-A 4932
19 5OBM 17 M6, m6 60S ribosomal protein L16-A 4932
20 4U53 52 M6, m6 60S ribosomal protein L16-A 4932
21 5ON6 17 CQ, w 60S ribosomal protein L16-A 4932
22 4U50 52 M6, m6 60S ribosomal protein L16-A 4932
23 5NDV 17 M6, m6 60S ribosomal protein L16-A 4932
24 5LYB 52 M6, m6 60S ribosomal protein L16-A 4932
25 4U56 52 M6, m6 60S ribosomal protein L16-A 4932
26 5TGA 52 M6, m6 60S ribosomal protein L16-A 4932
27 5MEI 17 CQ, w 60S ribosomal protein L16-A 4932
28 5FCJ 52 M6, m6 60S ribosomal protein L16-A 4932
29 4U4O 52 M6, m6 60S ribosomal protein L16-A 4932
30 5DGV 52 M6, m6 60S ribosomal protein L16-A 4932
31 5DGE 52 M6, m6 60S ribosomal protein L16-A 4932
32 5NDW 40 M6, m6 60S ribosomal protein L16-A 4932
33 4V8P 30 BI, CI, EI, GI 60S RIBOSOMAL PROTEIN L13A 5911
34 5NDG 52 M6, m6 60S ribosomal protein L16-A 4932
35 5FCI 52 M6, m6 60S ribosomal protein L16-A 4932
36 5DC3 52 M6, m6 60S ribosomal protein L16-A 4932
37 5DGF 52 M6, m6 60S ribosomal protein L16-A 4932
38 5TGM 52 M6, m6 60S ribosomal protein L16-A 4932
39 4V7R 45 BP, DP 60S ribosomal protein L16-A 4932
40 6Y6X 17 LO 60S ribosomal protein L13a 9606
41 6Y57 20 LO 60S ribosomal protein L13a 9606
42 6Y2L 20 LO 60S ribosomal protein L13a 9606
43 6Y0G 20 LO 60S ribosomal protein L13a 9606
44 6TNU 54 AU 60S ribosomal protein L16-A 4932
45 6UZ7 17 AO KLLA0F04675p 28985
46 6TB3 54 AU 60S ribosomal protein L16-A 4932
47 6T83 50 Oy, Qa 60S ribosomal protein L16-A 4932
48 6T7T 50 LO 60S ribosomal protein L16-A 4932
49 6T7I 50 LO 60S ribosomal protein L16-A 4932
50 6T59 14 O3 uL13 9986
51 6T4Q 49 LO 60S ribosomal protein L16-A 4932
52 6SV4 17 AU, XU, zU 60S ribosomal protein L16-A 4932
53 6SNT 50 u 60S ribosomal protein L16-A 4932
54 6SGC 49 O2 uL13 9986
55 6S47 17 AQ 60S ribosomal protein L16-A 4932
56 6RZZ 9 J 60S ribosomal protein L16-B 4932
57 6S05 9 J 60S ribosomal protein L16-B 4932
58 6P5I 52 AO uL13 9986
59 6P5J 52 AO uL13 9986
60 6P5K 17 AO uL13 9986
61 6P5N 17 AO uL13 9986
62 6RI5 9 J 60S ribosomal protein L16-B 4932
63 6OM7 50 P 60S ribosomal protein L13a 9606
64 6OLZ 19 AO 60S ribosomal protein L13a 9606
65 6OM0 50 P 60S ribosomal protein L13a 9606
66 6OLE 50 P 60S ribosomal protein L13a 9606
67 6OLF 50 P 60S ribosomal protein L13a 9606
68 6OLG 20 AO 60S ribosomal protein L13a 9606
69 6OLI 50 P 60S ribosomal protein L13a 9606
70 6R84 18 Q 60S ribosomal protein L16-A 4932
71 6R86 17 Q 60S ribosomal protein L16-A 4932
72 6R87 17 Q 60S ribosomal protein L16-A 4932
73 6R7Q 43 O uL13 9986
74 6R6G 39 O 60S ribosomal protein L13a 9986
75 6R6P 17 O uL13 9986
76 6R5Q 20 O uL13 9986
77 6QZP 17 LO 60S ribosomal protein L13a 9606
78 6QTZ 9 J 60S ribosomal protein L16-B 4932
79 6QT0 10 J 60S ribosomal protein L16-B 4932
80 6QIK 9 J 60S ribosomal protein L16-B 4932
81 6Q8Y 22 AU 60S ribosomal protein L16-A 4932
82 6N8J 29 O 60S ribosomal protein L16-A 4932
83 6N8K 28 O 60S ribosomal protein L16-A 4932
84 6N8L 28 O 60S ribosomal protein L16-A 4932
85 6N8M 20 b 60S ribosomal protein L16-A 4932
86 6N8N 23 b 60S ribosomal protein L16-A 4932
87 6N8O 25 b 60S ribosomal protein L16-A 4932
88 6I7O 17 AU, XU 60S ribosomal protein L16-A 4932
89 6IP5 17 2I 60S ribosomal protein L13a 9606
90 6IP6 17 2I 60S ribosomal protein L13a 9606
91 6IP8 17 2I 60S ribosomal protein L13a 9606
92 6MTB 20 O 60S ribosomal protein L13a 9986
93 6MTC 18 O 60S ribosomal protein L13a 9986
94 6MTD 17 O uL13 9986
95 6MTE 17 O uL13 9986
96 6HD7 20 Q 60S ribosomal protein L16-A 4932
97 6HCQ 51 O3 uL13 9986
98 6HCJ 51 O3 uL13 9986
99 6HCM 49 O3 uL13 9986
100 6HCF 49 O3 uL13 9986
101 6GZ3 54 AO ribosomal protein uL13 9986
102 6GZ4 54 AO ribosomal protein uL13 9986
103 6GZ5 54 AO ribosomal protein uL13 9986
104 6GQV 19 O 60S ribosomal protein L16-A 4932
105 6GQ1 19 O 60S ribosomal protein L16-A 4932
106 6GQB 19 O 60S ribosomal protein L16-A 4932
107 6D9J 14 O uL13 9986
108 6D90 14 O uL13 9986
109 6FTG 14 O uL13 9986
110 6FTI 14 O uL13 9986
111 6FTJ 14 O uL13 9986
112 6FT6 15 O 60S ribosomal protein L16-A 4932
113 6FRK 22 O Ribosomal protein uL13 9986
114 6CB1 15 O 60S ribosomal protein L16-A 4932
115 5Z3G 19 S 60S ribosomal protein L16-A 4932
116 6C0F 16 O 60S ribosomal protein L16-A 4932
117 6EM1 29 O 60S ribosomal protein L16-A 4932
118 6EM3 20 O 60S ribosomal protein L16-A Backbone model 4932
119 6EM4 23 O 60S ribosomal protein L16-A Backbone model 4932
120 6EM5 22 O 60S ribosomal protein L16-A Backbone model 4932
121 6ELZ 20 O 60S ribosomal protein L16-A 4932
122 6EK0 17 LO 60S ribosomal protein L13a 9606
123 5XY3 17 O Ribosomal protein L13, putative 5722
124 5UMD 11 K 60S ribosomal protein L13, putative 5833
125 5MC6 61 AU 60S ribosomal protein L16-A 4932
126 5H4P 16 O 60S ribosomal protein L16-A 4932
127 5M1J 72 K5 60S ribosomal protein L16-A 4932
128 5LZS 14 O uL13 9986
129 5LZT 14 O uL13 9986
130 5LZU 14 O uL13 9986
131 5LZV 14 O uL13 9986
132 5LZW 14 O uL13 9986
133 5LZX 14 O uL13 9986
134 5LZY 14 O uL13 9986
135 5LZZ 14 O uL13 9986
136 5T62 18 b 60S ribosomal protein L16-A 4932
137 5T6R 17 b 60S ribosomal protein L16-A 4932
138 5T2C 7 I 60S ribosomal protein L13a 9606
139 5LKS 17 LO 60S ribosomal protein L13a 9606
140 5JUO 20 T uL13 (yeast L16) 4932
141 5JUP 20 T uL13 (yeast L16) 4932
142 5JUS 20 T uL13 (yeast L16) 4932
143 5JUT 20 T uL13 (yeast L16) 4932
144 5JUU 20 T uL13 (yeast L16) 4932
145 5JCS 29 O 60S ribosomal protein L16-A 4932
146 5IT7 17 OO KLLA0F04675p 28985
147 3JCT 15 O 60S ribosomal protein L16-A 4932
148 5GAK 39 Q 60S ribosomal protein L16-A 4932
149 5FL8 15 O 60S ribosomal protein L16-A 4932
150 5APN 17 O 60S ribosomal protein L16-A 4932
151 5APO 17 O 60S ribosomal protein L16-A 4932
152 3JBN 57 AK 60S ribosomal protein uL13 5833
153 3JBO 58 AK 60S ribosomal protein uL13 5833
154 3JBP 57 AK 60S ribosomal protein uL13 5833
155 3JAN 9 O Ribosomal protein uL13 SEE REMARK 999 9986
156 3JAJ 9 O Ribosomal protein uL13 SEE REMARK 999 9986
157 3JAG 14 O uL13 9986
158 3JAH 14 O uL13 9986
159 3JAI 14 O uL13 9986
160 4UG0 17 LO 60S RIBOSOMAL PROTEIN L13A 9606
161 5AJ0 17 AO 60S ribosomal protein L13a 9606
162 3J92 14 O uL13 9986
163 4D67 14 O 60S RIBOSOMAL PROTEIN L13A 9986
164 4D5Y 14 O 60S RIBOSOMAL PROTEIN UL13 9986
165 4V3P 82 LK Ribosomal protein L13a 4565
166 3J7O 17 O Ribosomal protein uL13 9823
167 3J7P 18 O Ribosomal protein uL13 9823
168 3J7Q 17 O Ribosomal protein uL13 9823
169 3J7R 17 O Ribosomal protein uL13 9823
170 4UJC 20 BO 60S RIBOSOMAL PROTEIN L13A 9986
171 4UJD 17 AO 60S RIBOSOMAL PROTEIN L13A 9986
172 3J79 11 K 60S ribosomal protein uL13 5833
173 3J77 16 66 60S ribosomal protein L16 4932
174 3J78 16 66 60S ribosomal protein L16 4932
175 3J6X 18 56 60S ribosomal protein L16 4932
176 3J6Y 18 56 60S ribosomal protein L16 4932
177 4UJE 51 CO 60S RIBOSOMAL PROTEIN L13A 9986
178 4V7F 13 J 60S ribosomal protein L16 4932
179 4V7E 73 CO 60S ribosomal protein L13 4565
180 4V8Y 49 BO 60S RIBOSOMAL PROTEIN L16-A 4932
181 4V8Z 49 BO 60S RIBOSOMAL PROTEIN L16-A 4932
182 4V6W 41 CO 60S ribosomal protein L13a 7227
183 4V6X 41 CO 60S ribosomal protein L13a 9606
184 4V8T 15 O 60S RIBOSOMAL PROTEIN L16-A 4932
185 4V6I 40 BK 60S ribosomal protein rpL16 (L13p) 4932
186 4V5Z 62 Bj 60S ribosomal protein L13a 9612