4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 238 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 90 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 110 384
70 % 2 115 396
50 % 2 234 232
40 % 2 234 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 110 383
70 % 2 232 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 112 351
90 % 2 112 371
70 % 2 236 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 112 352
90 % 2 113 365
70 % 2 113 412
50 % 2 228 234
40 % 2 239 227
30 % 2 240 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 202 276
40 % 2 202 283
30 % 2 202 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 102 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 204 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 80 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 114 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 111 378
70 % 2 242 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 115 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 64 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 49 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 106 388
90 % 2 106 411
70 % 2 212 244
50 % 2 224 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 355
95 % 2 93 444
90 % 2 103 426
70 % 2 110 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 111 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 192 266
50 % 2 200 286
40 % 2 200 295
30 % 2 200 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 111 487
50 % 2 191 337
40 % 2 191 351
30 % 2 191 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 199 268
40 % 5 205 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 208 267
40 % 47 282 196
30 % 47 282 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 55 595
95 % 2 55 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 113 345
90 % 2 115 352
70 % 2 115 395
50 % 2 220 251
40 % 2 220 253
30 % 2 222 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 273
95 % 2 117 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 220 254
30 % 2 220 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 203 283
40 % 2 205 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 121 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 113 363
70 % 2 115 394
50 % 2 207 273
40 % 2 207 279
30 % 2 206 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 112 348
90 % 2 112 368
70 % 2 114 403
50 % 2 215 263
40 % 2 216 260
30 % 2 218 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 90 488
50 % 2 190 304
40 % 2 190 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 106 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 210 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 286
95 % 2 111 366
90 % 2 111 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 205 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 276
95 % 2 113 342
90 % 2 113 364
70 % 2 115 398
50 % 2 115 453
40 % 2 115 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 118 325
90 % 2 118 345
70 % 2 205 255
50 % 2 219 253
40 % 2 219 255
30 % 2 219 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 112 369
70 % 2 114 402
50 % 2 207 270
40 % 2 208 275
30 % 2 208 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 116 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 217 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 274
95 % 2 113 346
90 % 2 115 355
70 % 2 115 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 107 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 208 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 113 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 200 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 203 301
30 % 2 210 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 109 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 244 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 89 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 118 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 215 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 298
95 % 2 107 383
90 % 2 109 398
70 % 2 109 431
50 % 2 193 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 210 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 96 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 113 267
95 % 3 113 337
90 % 3 115 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 280
95 % 2 111 353
90 % 2 111 375
70 % 2 113 409
50 % 2 207 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 116 389
50 % 2 211 264
40 % 2 215 261
30 % 2 216 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 283
95 % 2 112 360
90 % 2 112 381
70 % 2 114 411
50 % 2 203 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 239 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 109 433
50 % 2 192 307
40 % 2 192 318
30 % 2 192 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 295
95 % 2 112 358
90 % 2 112 373
70 % 2 114 407
50 % 2 114 461
40 % 2 200 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 114 336
90 % 2 114 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 297
95 % 2 107 381
90 % 2 107 408
70 % 2 109 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 216 255
40 % 2 216 259
30 % 2 217 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 97 484
50 % 1 97 524
40 % 1 97 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 99 417
90 % 2 101 431
70 % 2 194 269
50 % 2 201 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 97 436
90 % 2 97 454
70 % 2 109 435
50 % 2 219 252
40 % 2 224 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 111 487
50 % 3 191 337
40 % 3 191 351
30 % 3 191 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 340
95 % 2 96 437
90 % 2 108 406
70 % 2 108 436
50 % 2 226 243
40 % 2 226 245
30 % 2 229 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 56 BS, DS 60S ribosomal protein L20-A 4932
2 4U4R 56 N0, n0 60S ribosomal protein L20-A 4932
3 4U3U 56 N0, n0 60S ribosomal protein L20-A 4932
4 5TBW 21 0, CU 60S ribosomal protein L20-A 4932
5 4U3M 56 N0, n0 60S ribosomal protein L20-A 4932
6 4U3N 56 N0, n0 60S ribosomal protein L20-A 4932
7 4U52 56 N0, n0 60S ribosomal protein L20-A 4932
8 4U4Q 56 N0, n0 60S ribosomal protein L20-A 4932
9 4U6F 56 N0, n0 60S ribosomal protein L20-A 4932
10 4U4U 56 N0, n0 60S ribosomal protein L20-A 4932
11 4U4Z 56 N0, n0 60S ribosomal protein L20-A 4932
12 4U4Y 56 N0, n0 60S ribosomal protein L20-A 4932
13 4U4N 56 N0, n0 60S ribosomal protein L20-A 4932
14 4U55 56 N0, n0 60S ribosomal protein L20-A 4932
15 5DAT 56 N0, n0 60S ribosomal protein L20-A 4932
16 5I4L 56 N0, n0 60S ribosomal protein L20-A 4932
17 4U51 56 N0, n0 60S ribosomal protein L20-A 4932
18 6HHQ 21 0, CU 60S ribosomal protein L20-A 4932
19 5OBM 21 N0, n0 60S ribosomal protein L20-A 4932
20 4U53 56 N0, n0 60S ribosomal protein L20-A 4932
21 5ON6 21 0, CU 60S ribosomal protein L20-A 4932
22 4U50 56 N0, n0 60S ribosomal protein L20-A 4932
23 5NDV 21 N0, n0 60S ribosomal protein L20-A 4932
24 5LYB 56 N0, n0 60S ribosomal protein L20-A 4932
25 4U56 56 N0, n0 60S ribosomal protein L20-A 4932
26 5TGA 56 N0, n0 60S ribosomal protein L20-A 4932
27 5MEI 21 0, CU 60S ribosomal protein L20-A 4932
28 5FCJ 56 N0, n0 60S ribosomal protein L20-A 4932
29 4U4O 56 N0, n0 60S ribosomal protein L20-A 4932
30 5DGV 56 N0, n0 60S ribosomal protein L20-A 4932
31 5DGE 56 N0, n0 60S ribosomal protein L20-A 4932
32 5NDW 44 N0, n0 60S ribosomal protein L20-A 4932
33 5NDG 56 N0, n0 60S ribosomal protein L20-A 4932
34 5FCI 56 N0, n0 60S ribosomal protein L20-A 4932
35 5DC3 56 N0, n0 60S ribosomal protein L20-A 4932
36 5DGF 56 N0, n0 60S ribosomal protein L20-A 4932
37 5TGM 56 N0, n0 60S ribosomal protein L20-A 4932
38 6ZMO 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
39 6ZME 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
40 6ZMI 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
41 6ZM7 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
42 6XIQ 18 S 60S ribosomal protein L20-A 4932
43 6XIR 18 S 60S ribosomal protein L20-A 4932
44 6Z6J 56 LS 60S ribosomal protein L20-A 4932
45 6Z6K 56 LS 60S ribosomal protein L20-A 4932
46 6Z6L 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
47 6Z6M 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
48 6Z6N 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
49 6WOO 21 S eL20 4932
50 6YLG 24 S 60S ribosomal protein L20-A 4932
51 6YLH 24 S 60S ribosomal protein L20-A 4932
52 6YLX 15 S 60S ribosomal protein L20-A 4932
53 6YLY 31 S 60S ribosomal protein L20-A 4932
54 6W6L 20 T 60S ribosomal protein L18a 9606 2.3.1.275 | Details
55 6M62 25 S 60S ribosomal protein L20-A 4932
56 6Y6X 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
57 6Y57 24 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
58 6Y2L 24 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
59 6Y0G 24 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
60 6LU8 35 b 60S ribosomal protein L18a 9606 2.3.1.275 | Details
61 6LSR 33 b 60S ribosomal protein L18a 9606 2.3.1.275 | Details
62 6LSS 33 b 60S ribosomal protein L18a 9606 2.3.1.275 | Details
63 6LQM 34 b 60S ribosomal protein L18a 9606 2.3.1.275 | Details
64 6TNU 58 BH 60S ribosomal protein L20-A 4932
65 6UZ7 21 AS 60S ribosomal protein L20 28985
66 6TB3 58 BH 60S ribosomal protein L20-A 4932
67 6T83 54 D, Sy 60S ribosomal protein L20-A 4932
68 6T7T 54 LS 60S ribosomal protein L20-A 4932
69 6T7I 54 LS 60S ribosomal protein L20-A 4932
70 6T59 18 S3 eL20 9986
71 6T4Q 53 LS 60S ribosomal protein L20-A 4932
72 6SV4 55 BH, YH, ZH 60S ribosomal protein L20-A 4932
73 6SNT 54 y 60S ribosomal protein L20-A 4932
74 6SGC 53 S2 eL20 9986
75 6S47 21 AU 60S ribosomal protein L20-A 4932
76 6RZZ 18 S 60S ribosomal protein L20-A 4932
77 6S05 18 S 60S ribosomal protein L20-A 4932
78 6P5I 56 AS eL20 9986
79 6P5J 56 AS eL20 9986
80 6P5K 21 AS eL20 9986
81 6P5N 21 AS eL20 9986
82 6RI5 18 S 60S ribosomal protein L20-A 4932
83 6OM7 54 T 60S ribosomal protein L18a 9606 2.3.1.275 | Details
84 6OLZ 23 AS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
85 6OM0 54 T 60S ribosomal protein L18a 9606 2.3.1.275 | Details
86 6OLE 54 T 60S ribosomal protein L18a 9606 2.3.1.275 | Details
87 6OLF 54 T 60S ribosomal protein L18a 9606 2.3.1.275 | Details
88 6OLG 24 AS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
89 6OLI 54 T 60S ribosomal protein L18a 9606 2.3.1.275 | Details
90 6R84 23 U 60S ribosomal protein L20-A 4932
91 6R86 22 U 60S ribosomal protein L20-A 4932
92 6R87 22 U 60S ribosomal protein L20-A 4932
93 6R7Q 47 S eL20 9986
94 6R6G 47 S eL20 9986
95 6R6P 21 S eL20 9986
96 6R5Q 24 S eL20 9986
97 6QZP 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
98 6QTZ 18 S 60S ribosomal protein L20-A 4932
99 6QT0 19 S 60S ribosomal protein L20-A 4932
100 6QIK 18 S 60S ribosomal protein L20-A 4932
101 6Q8Y 45 BH 60S ribosomal protein L20-A 4932
102 6N8J 34 S 60S ribosomal protein L20-A 4932
103 6N8K 32 S 60S ribosomal protein L20-A 4932
104 6N8L 32 S 60S ribosomal protein L20-A 4932
105 6N8M 24 f 60S ribosomal protein L20-A 4932
106 6N8N 27 f 60S ribosomal protein L20-A 4932
107 6N8O 29 f 60S ribosomal protein L20-A 4932
108 6I7O 55 BH, YH 60S ribosomal protein L20-A 4932
109 6IP5 21 2M 60S ribosomal protein L18a 9606 2.3.1.275 | Details
110 6IP6 21 2M 60S ribosomal protein L18a 9606 2.3.1.275 | Details
111 6IP8 21 2M 60S ribosomal protein L18a 9606 2.3.1.275 | Details
112 6MTB 24 S 60S ribosomal protein L18a 9986
113 6MTC 22 S 60S ribosomal protein L18a 9986
114 6MTD 21 S eL20 9986
115 6MTE 21 S eL20 9986
116 6HD7 24 U 60S ribosomal protein L20-A 4932
117 6HCQ 55 S3 eL20 9986
118 6HCJ 55 S3 eL20 9986
119 6HCM 53 S3 eL20 9986
120 6HCF 53 S3 eL20 9986
121 6GZ3 58 AS ribosomal protein eL20 9986
122 6GZ4 58 AS ribosomal protein eL20 9986
123 6GZ5 58 AS ribosomal protein eL20 9986
124 6GQV 23 S 60S ribosomal protein L20-A 4932
125 6GQ1 23 S 60S ribosomal protein L20-A 4932
126 6GQB 23 S 60S ribosomal protein L20-A 4932
127 6D9J 18 S eL20 9986
128 6D90 18 S eL20 9986
129 6FTG 18 S eL20 9986
130 6FTI 18 S eL20 9986
131 6FTJ 18 S eL20 9986
132 6FT6 19 S 60S ribosomal protein L20-A 4932
133 6FRK 26 S Ribosomal protein eL20 9986
134 6CB1 18 S 60S ribosomal protein L20-A 4932
135 5Z3G 23 W 60S ribosomal protein L20-A 4932
136 6C0F 19 S 60S ribosomal protein L20-A 4932
137 6EM1 32 S 60S ribosomal protein L20-A 4932
138 6EM3 23 S 60S ribosomal protein L20-A Backbone model 4932
139 6EM4 26 S 60S ribosomal protein L20-A Backbone model 4932
140 6EM5 8 S 60S ribosomal protein L20-A Backbone model 4932
141 6ELZ 8 S 60S ribosomal protein L20-A 4932
142 6EK0 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
143 5XXB 21 R Ribosomal protein eL20 5811
144 5UMD 21 U 60S ribosomal protein L18a 5833
145 5MC6 74 BH 60S ribosomal protein L20-A 4932
146 5H4P 20 S 60S ribosomal protein L20-A 4932
147 5M1J 68 S5 60S ribosomal protein L20-A 4932
148 5LZS 18 S eL20 9986
149 5LZT 18 S eL20 9986
150 5LZU 18 S eL20 9986
151 5LZV 18 S eL20 9986
152 5LZW 18 S eL20 9986
153 5LZX 18 S eL20 9986
154 5LZY 18 S eL20 9986
155 5LZZ 18 S eL20 9986
156 5T62 22 f 60S ribosomal protein L20-A 4932
157 5T6R 21 f 60S ribosomal protein L20-A 4932
158 5T2C 42 M 60S ribosomal protein L18a 9606 2.3.1.275 | Details
159 5LKS 21 LS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
160 5JUO 24 X eL20 (yeast L20) 4932
161 5JUP 24 X eL20 (yeast L20) 4932
162 5JUS 24 X eL20 (yeast L20) 4932
163 5JUT 24 X eL20 (yeast L20) 4932
164 5JUU 24 X eL20 (yeast L20) 4932
165 5JCS 37 S 60S ribosomal protein L20-A 4932
166 5IT7 21 SS 60S ribosomal protein L20 28985
167 3JCT 19 S 60S ribosomal protein L20-A 4932
168 5GAK 46 U 60S ribosomal protein L20-A 4932
169 5FL8 19 S 60S ribosomal protein L20-A 4932
170 5APN 21 S 60S ribosomal protein L20-A 4932
171 5APO 21 S 60S ribosomal protein L20-A 4932
172 3JBN 73 AU 60S ribosomal protein eL20 5833
173 3JBO 73 AU 60S ribosomal protein eL20 5833
174 3JBP 73 AU 60S ribosomal protein eL20 5833
175 3JAN 12 S Ribosomal protein eL20 SEE REMARK 999 9986
176 3JAJ 12 S Ribosomal protein eL20 SEE REMARK 999 9986
177 3JAG 18 S eL20 9986
178 3JAH 18 S eL20 9986
179 3JAI 18 S eL20 9986
180 4UG0 21 LS 60S RIBOSOMAL PROTEIN L18A 9606 2.3.1.275 | Details
181 5AJ0 21 AS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
182 4D67 18 S 60S RIBOSOMAL PROTEIN L18A 9986
183 4D5Y 18 S 60S RIBOSOMAL PROTEIN EL20 9986
184 4UJC 24 BS 60S RIBOSOMAL PROTEIN L18A 9986
185 4UJD 21 AS 60S RIBOSOMAL PROTEIN L18A 9986
186 3J79 21 U 60S ribosomal protein eL20 5833
187 3J77 20 70 60S ribosomal protein L20 4932
188 3J78 20 70 60S ribosomal protein L20 4932
189 3J6X 22 60 60S ribosomal protein L20 4932
190 3J6Y 22 60 60S ribosomal protein L20 4932
191 4UJE 55 CS 60S RIBOSOMAL PROTEIN L18A 9986
192 4V91 21 S EL20 RIBOSOMAL PROTEIN EL20 28985
193 4V7F 22 S 60S ribosomal protein L20 4932
194 4V8Y 53 BS 60S RIBOSOMAL PROTEIN L20-B 4932
195 4V8Z 53 BS 60S RIBOSOMAL PROTEIN L20-B 4932
196 4V6W 52 CS 60S ribosomal protein L18a 7227
197 4V6X 52 CS 60S ribosomal protein L18a 9606 2.3.1.275 | Details
198 4V8T 19 S 60S RIBOSOMAL PROTEIN L20-A 4932