4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 234 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 89 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 107 384
70 % 2 115 396
50 % 2 226 232
40 % 2 228 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 108 383
70 % 2 229 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 128 351
90 % 2 110 371
70 % 2 233 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 111 352
90 % 2 111 365
70 % 2 112 412
50 % 2 228 234
40 % 2 239 227
30 % 2 238 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 204 276
40 % 2 205 283
30 % 2 204 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 100 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 209 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 79 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 112 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 110 378
70 % 2 247 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 113 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 63 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 84 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 104 388
90 % 2 103 411
70 % 2 207 244
50 % 2 219 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 355
95 % 2 93 444
90 % 2 103 426
70 % 2 108 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 109 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 190 266
50 % 2 200 286
40 % 2 200 295
30 % 2 205 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 11 487
50 % 2 191 337
40 % 2 191 351
30 % 2 189 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 197 268
40 % 5 203 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 207 267
40 % 47 275 196
30 % 47 271 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 595
95 % 2 85 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 112 345
90 % 2 115 352
70 % 2 114 395
50 % 2 220 251
40 % 2 220 253
30 % 2 221 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 273
95 % 2 116 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 218 254
30 % 2 219 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 200 283
40 % 2 204 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 160 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 112 363
70 % 2 117 394
50 % 2 206 273
40 % 2 207 279
30 % 2 198 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 111 348
90 % 2 128 368
70 % 2 114 403
50 % 2 215 263
40 % 2 215 260
30 % 2 216 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 96 488
50 % 2 190 304
40 % 2 192 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 104 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 212 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 286
95 % 2 111 366
90 % 2 108 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 200 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 276
95 % 2 115 342
90 % 2 113 364
70 % 2 114 398
50 % 2 114 453
40 % 2 131 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 117 325
90 % 2 118 345
70 % 2 205 255
50 % 2 216 253
40 % 2 219 255
30 % 2 215 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 111 369
70 % 2 114 402
50 % 2 207 270
40 % 2 207 275
30 % 2 206 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 52 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 215 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 274
95 % 2 112 346
90 % 2 115 355
70 % 2 131 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 106 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 206 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 127 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 231 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 197 301
30 % 2 209 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 105 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 240 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 26 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 82 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 214 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 298
95 % 2 107 383
90 % 2 106 398
70 % 2 109 431
50 % 2 192 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 209 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 95 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 130 267
95 % 3 112 337
90 % 3 52 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 280
95 % 2 111 353
90 % 2 111 375
70 % 2 112 409
50 % 2 206 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 115 389
50 % 2 204 264
40 % 2 215 261
30 % 2 214 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 283
95 % 2 110 360
90 % 2 112 381
70 % 2 114 411
50 % 2 230 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 197 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 106 433
50 % 2 192 307
40 % 2 192 318
30 % 2 191 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 295
95 % 2 111 358
90 % 2 112 373
70 % 2 112 407
50 % 2 114 461
40 % 2 195 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 113 336
90 % 2 112 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 297
95 % 2 107 381
90 % 2 103 408
70 % 2 108 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 214 255
40 % 2 216 259
30 % 2 210 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 91 484
50 % 1 97 524
40 % 1 96 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 98 417
90 % 2 101 431
70 % 2 194 269
50 % 2 202 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 91 436
90 % 2 97 454
70 % 2 109 435
50 % 2 215 252
40 % 2 219 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 11 487
50 % 3 191 337
40 % 3 191 351
30 % 3 189 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 340
95 % 2 96 437
90 % 2 108 406
70 % 2 104 436
50 % 2 224 243
40 % 2 224 245
30 % 2 226 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 70 Bg, Dg 60S ribosomal protein L34-A 4932 3.1.1 | Details
2 4U4R 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
3 4U3U 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
4 5TBW 35 AH, DI 60S ribosomal protein L34-A 4932 3.1.1 | Details
5 4U3M 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
6 4U3N 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
7 4U52 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
8 4U4Q 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
9 4U6F 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
10 4U4U 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
11 4U4Z 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
12 4U4Y 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
13 4U4N 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
14 4U55 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
15 5DAT 70 O4, o4 60S ribosomal protein L34-A (eL34) 4932 3.1.1 | Details
16 5I4L 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
17 4U51 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
18 6HHQ 35 AH, DI 60S ribosomal protein L34-A 4932 3.1.1 | Details
19 5OBM 35 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
20 4U53 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
21 5ON6 36 AH, DI 60S ribosomal protein L34-A 4932 3.1.1 | Details
22 4U50 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
23 5NDV 35 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
24 5LYB 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
25 4U56 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
26 5TGA 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
27 5MEI 36 AH, DI 60S ribosomal protein L34-A 4932 3.1.1 | Details
28 5FCJ 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
29 4U4O 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
30 5DGV 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
31 5DGE 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
32 5NDW 58 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
33 5NDG 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
34 5FCI 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
35 5DC3 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
36 5DGF 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
37 5TGM 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
38 6ZMO 35 Lg 60S ribosomal protein L34 9606
39 6ZME 35 Lg 60S ribosomal protein L34 9606
40 6ZMI 35 Lg 60S ribosomal protein L34 9606
41 6ZM7 35 Lg 60S ribosomal protein L34 9606
42 6XIQ 39 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
43 6XIR 37 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
44 6Z6J 70 Lg 60S ribosomal protein L34-A 4932 3.1.1 | Details
45 6Z6K 70 Lg 60S ribosomal protein L34-A 4932 3.1.1 | Details
46 6Z6L 35 Lg 60S ribosomal protein L34 9606
47 6Z6M 35 Lg 60S ribosomal protein L34 9606
48 6Z6N 35 Lg 60S ribosomal protein L34 9606
49 6WOO 35 g eL34 4932 3.1.1 | Details
50 6YLG 38 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
51 6YLH 38 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
52 6YLX 29 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
53 6YLY 13 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
54 6W6L 34 h 60S ribosomal protein L34 9606
55 6M62 39 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
56 6Y6X 35 Lg 60S ribosomal protein L34 9606
57 6Y57 38 Lg 60S ribosomal protein L34 9606
58 6Y2L 38 Lg 60S ribosomal protein L34 9606
59 6Y0G 38 Lg 60S ribosomal protein L34 9606
60 6LU8 15 F 60S ribosomal protein L34 9606
61 6LSR 13 F 60S ribosomal protein L34 9606
62 6LSS 13 F 60S ribosomal protein L34 9606
63 6LQM 12 F 60S ribosomal protein L34 9606
64 6TNU 72 BN 60S ribosomal protein L34-A 4932 3.1.1 | Details
65 6UZ7 35 Bg KLLA0C08371p 28985
66 6TB3 72 BN 60S ribosomal protein L34-A 4932 3.1.1 | Details
67 6T83 68 R, gy 60S ribosomal protein L34-A 4932 3.1.1 | Details
68 6T7T 68 Lg 60S ribosomal protein L34-A 4932 3.1.1 | Details
69 6T7I 68 Lg 60S ribosomal protein L34-A 4932 3.1.1 | Details
70 6T59 32 g3 eL34 9986
71 6T4Q 67 Lg 60S ribosomal protein L34-A 4932 3.1.1 | Details
72 6SV4 69 BN, YN, ZN 60S ribosomal protein L34-A 4932 3.1.1 | Details
73 6SNT 68 aj 60S ribosomal protein L34-A 4932 3.1.1 | Details
74 6SGC 67 g2 eL34 9986
75 6S47 35 Ai 60S ribosomal protein L34-A 4932 3.1.1 | Details
76 6RZZ 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
77 6S05 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
78 6P5I 70 Ag eL34 9986
79 6P5J 70 Ag eL34 9986
80 6P5K 35 Ag eL34 9986
81 6P5N 35 Ag eL34 9986
82 6RI5 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
83 6OM7 68 h 60S ribosomal protein L34 9606
84 6OLZ 37 Ag 60S ribosomal protein L34 9606
85 6OM0 68 h 60S ribosomal protein L34 9606
86 6OLE 68 h 60S ribosomal protein L34 9606
87 6OLF 67 h 60S ribosomal protein L34 9606
88 6OLG 38 Ag 60S ribosomal protein L34 9606
89 6OLI 68 h 60S ribosomal protein L34 9606
90 6R84 4 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
91 6R86 3 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
92 6R87 3 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
93 6R7Q 62 g eL34 9986
94 6R6G 66 g eL34 9986
95 6R6P 35 g eL34 9986
96 6R5Q 38 g eL34 9986
97 6QZP 35 Lg 60S ribosomal protein L34 9606
98 6QTZ 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
99 6QT0 33 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
100 6QIK 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
101 6Q8Y 51 BN 60S ribosomal protein L34-A 4932 3.1.1 | Details
102 6N8J 15 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
103 6N8K 15 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
104 6N8L 15 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
105 6N8M 38 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
106 6N8N 41 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
107 6N8O 43 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
108 6I7O 69 BN, YN 60S ribosomal protein L34-A 4932 3.1.1 | Details
109 6IP5 35 2a 60S ribosomal protein L34 9606
110 6IP6 35 2a 60S ribosomal protein L34 9606
111 6IP8 35 2a 60S ribosomal protein L34 9606
112 6MTB 38 g 60S ribosomal protein L34 9986
113 6MTC 36 g 60S ribosomal protein L34 9986
114 6MTD 35 g eL34 9986
115 6MTE 35 g eL34 9986
116 6HD7 38 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
117 6HCQ 68 g3 eL34 9986
118 6HCJ 68 g3 eL34 9986
119 6HCM 67 g3 eL34 9986
120 6HCF 67 g3 eL34 9986
121 6GZ3 72 Ag ribosomal protein eL34 9986
122 6GZ4 72 Ag ribosomal protein eL34 9986
123 6GZ5 72 Ag ribosomal protein eL34 9986
124 6GQV 37 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
125 6GQ1 37 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
126 6GQB 37 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
127 6D9J 32 g eL34 9986
128 6D90 32 g eL34 9986
129 6FTG 32 g eL34 9986
130 6FTI 32 g eL34 9986
131 6FTJ 32 g eL34 9986
132 6FT6 33 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
133 6FRK 40 g Ribosomal protein eL34 9986
134 6CB1 28 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
135 6EM5 16 g 60S ribosomal protein L34-A Backbone model 4932 3.1.1 | Details
136 6ELZ 16 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
137 6EK0 35 Lg 60S ribosomal protein L34 9606
138 5MC6 80 BN 60S ribosomal protein L34-A 4932 3.1.1 | Details
139 5H4P 34 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
140 5M1J 50 g5 60S ribosomal protein L34-A 4932 3.1.1 | Details
141 5LZS 32 g eL34 9986
142 5LZT 32 g eL34 9986
143 5LZU 32 g eL34 9986
144 5LZV 32 g eL34 9986
145 5LZW 32 g eL34 9986
146 5LZX 32 g eL34 9986
147 5LZY 32 g eL34 9986
148 5LZZ 32 g eL34 9986
149 5T62 36 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
150 5T6R 35 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
151 5T2C 21 a 60S ribosomal protein L34 9606
152 5LKS 35 Lg 60S ribosomal protein L34 9606
153 5JUO 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
154 5JUP 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
155 5JUS 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
156 5JUT 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
157 5JUU 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
158 5JCS 10 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
159 5IT7 35 gg KLLA0C08371p 28985
160 3JCT 33 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
161 5GAK 24 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
162 5FL8 31 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
163 5APN 35 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
164 5APO 35 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
165 3JAN 25 g Ribosomal protein eL34 SEE REMARK 999 9986
166 3JAJ 25 g Ribosomal protein eL34 SEE REMARK 999 9986
167 3JAG 32 g eL34 9986
168 3JAH 32 g eL34 9986
169 3JAI 32 g eL34 9986
170 4UG0 35 Lg 60S RIBOSOMAL PROTEIN L34 9606
171 5AJ0 35 Ag 60S ribosomal protein L34 9606
172 3J92 32 g eL34 9986
173 4D67 32 g 60S RIBOSOMAL PROTEIN L34 9986
174 4D5Y 32 g 60S RIBOSOMAL PROTEIN EL34 9986
175 3J7O 35 g Ribosomal protein eL34 9823
176 3J7P 36 g Ribosomal protein eL34 9823
177 3J7Q 35 g Ribosomal protein eL34 9823
178 3J7R 35 g Ribosomal protein eL34 9823
179 4UJC 38 Bg 60S RIBOSOMAL PROTEIN L34 9986
180 4UJD 35 Ag 60S RIBOSOMAL PROTEIN L34 9986
181 3J77 34 84 60S ribosomal protein L34 4932 3.1.1 | Details
182 3J78 34 84 60S ribosomal protein L34 4932 3.1.1 | Details
183 3J6X 36 74 60S ribosomal protein L34 4932 3.1.1 | Details
184 3J6Y 36 74 60S ribosomal protein L34 4932 3.1.1 | Details
185 4UJE 69 Cg 60S RIBOSOMAL PROTEIN L34 9986
186 4V91 35 g EL34 RIBOSOMAL PROTEIN EL34 28985
187 4V7F 35 f 60S ribosomal protein L34 4932 3.1.1 | Details
188 4V8Y 67 Bg 60S RIBOSOMAL PROTEIN L34-A 4932 3.1.1 | Details
189 4V8Z 67 Bg 60S RIBOSOMAL PROTEIN L34-A 4932 3.1.1 | Details
190 4V6X 69 Cg 60S ribosomal protein L34 9606
191 4V8T 33 g 60S RIBOSOMAL PROTEIN L34-A 4932 3.1.1 | Details
192 4V6I 60 Bi 60S ribosomal protein rpL34 (L34e) 4932 3.1.1 | Details