4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 412
95 % 2 70 528
90 % 2 76 510
70 % 2 93 460
50 % 2 190 260
40 % 2 194 260
30 % 2 194 272
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 350
95 % 2 80 459
90 % 2 92 428
70 % 2 185 250
50 % 2 200 236
40 % 2 208 236
30 % 2 208 246
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 1547
95 % 2 65 614
90 % 2 68 624
70 % 2 84 537
50 % 2 84 564
40 % 2 84 604
30 % 2 84 621
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 358
95 % 2 78 471
90 % 2 90 438
70 % 2 95 449
50 % 2 197 244
40 % 2 197 253
30 % 2 197 264
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 33 1147
95 % 2 51 774
90 % 2 53 771
70 % 2 85 506
50 % 2 85 533
40 % 2 88 559
30 % 2 88 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 362
95 % 2 78 472
90 % 2 90 441
70 % 2 190 248
50 % 2 197 246
40 % 2 205 239
30 % 2 206 248
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 349
95 % 2 92 413
90 % 2 92 427
70 % 2 198 227
50 % 2 199 238
40 % 2 199 247
30 % 2 199 259
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 58 533
95 % 2 68 548
90 % 2 68 576
70 % 2 86 499
50 % 2 179 302
40 % 2 187 286
30 % 2 187 304
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 348
95 % 2 91 416
90 % 2 92 430
70 % 2 92 461
50 % 2 190 253
40 % 2 198 249
30 % 2 199 260
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 415
95 % 2 70 531
90 % 2 82 491
70 % 2 82 518
50 % 2 176 304
40 % 2 176 310
30 % 2 176 327
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 606
95 % 2 51 787
90 % 2 51 820
70 % 2 59 759
50 % 2 68 715
40 % 2 133 403
30 % 2 133 414
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 371
95 % 2 76 479
90 % 2 88 452
70 % 2 183 254
50 % 2 192 252
40 % 2 202 242
30 % 2 202 255
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 74 375
95 % 2 74 488
90 % 2 74 515
70 % 2 86 492
50 % 2 87 519
40 % 2 87 554
30 % 2 88 574
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 381
95 % 2 74 494
90 % 2 74 523
70 % 2 86 496
50 % 2 86 525
40 % 2 88 537
30 % 2 88 564
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 386
95 % 2 73 501
90 % 2 85 473
70 % 2 85 501
50 % 2 171 317
40 % 2 171 327
30 % 2 171 341
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 364
95 % 2 94 411
90 % 2 94 425
70 % 2 201 234
50 % 2 203 231
40 % 3 212 230
30 % 38 808 23
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 366
95 % 2 90 421
90 % 2 90 435
70 % 2 204 222
50 % 2 214 221
40 % 2 214 227
30 % 2 214 235
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 365
95 % 2 78 476
90 % 2 90 446
70 % 2 90 474
50 % 2 192 267
40 % 2 192 280
30 % 2 192 292
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 50 590
95 % 2 50 796
90 % 2 50 831
70 % 2 58 775
50 % 2 58 807
40 % 2 58 837
30 % 2 60 857
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 570
95 % 1 47 762
90 % 1 51 757
70 % 1 51 779
50 % 1 85 552
40 % 1 85 591
30 % 1 85 608
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 378
95 % 2 87 441
90 % 2 87 468
70 % 2 175 270
50 % 2 187 268
40 % 2 187 281
30 % 2 187 295
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 73 384
95 % 2 74 499
90 % 2 84 478
70 % 2 91 470
50 % 2 97 470
40 % 2 161 336
30 % 2 161 355
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 48 632
95 % 2 90 419
90 % 2 90 436
70 % 2 191 247
50 % 2 202 232
40 % 2 203 241
30 % 2 203 252
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 383
95 % 2 72 504
90 % 2 73 528
70 % 2 168 281
50 % 2 176 294
40 % 2 176 305
30 % 2 176 325
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 370
95 % 2 95 481
90 % 2 107 456
70 % 2 107 484
50 % 2 171 360
40 % 2 171 371
30 % 2 171 385
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 774
95 % 1 43 949
90 % 1 43 982
70 % 1 78 627
50 % 1 82 628
40 % 1 82 667
30 % 1 82 685
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 71 394
95 % 3 77 452
90 % 3 77 481
70 % 3 77 508
50 % 5 176 280
40 % 5 182 271
30 % 5 183 283
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1033
95 % 1 27 1370
90 % 1 27 1410
70 % 3 33 1227
50 % 3 33 1278
40 % 3 33 1315
30 % 3 33 1349
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 292
95 % 2 97 392
90 % 2 99 397
70 % 2 174 278
50 % 2 187 277
40 % 47 258 200
30 % 47 258 210
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 581
95 % 2 51 785
90 % 2 51 819
70 % 2 59 761
50 % 2 66 732
40 % 2 66 760
30 % 2 66 800
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 288
95 % 2 103 355
90 % 2 105 362
70 % 2 105 402
50 % 2 198 250
40 % 2 198 262
30 % 2 200 269
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 270
95 % 2 107 329
90 % 2 107 346
70 % 2 109 385
50 % 2 157 345
40 % 2 198 263
30 % 2 198 275
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 93 316
95 % 2 95 405
90 % 2 95 421
70 % 2 97 442
50 % 2 183 290
40 % 2 185 292
30 % 2 185 311
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 298
95 % 2 102 356
90 % 2 103 369
70 % 2 106 393
50 % 2 107 444
40 % 2 111 456
30 % 2 111 474
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 267
95 % 2 103 352
90 % 2 103 371
70 % 2 105 398
50 % 2 185 284
40 % 2 185 295
30 % 2 184 319
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 106 350
90 % 2 106 375
70 % 2 108 397
50 % 2 169 328
40 % 2 171 333
30 % 2 171 350
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 272
95 % 2 102 357
90 % 2 102 378
70 % 2 104 405
50 % 2 193 270
40 % 47 265 193
30 % 47 266 203
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 83 341
95 % 2 83 449
90 % 2 85 470
70 % 2 85 498
50 % 2 176 310
40 % 2 176 319
30 % 2 176 334
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 1157
95 % 2 98 385
90 % 2 100 392
70 % 3 186 257
50 % 3 190 271
40 % 3 190 283
30 % 3 190 298
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 280
95 % 2 101 372
90 % 2 101 390
70 % 2 103 412
50 % 2 103 462
40 % 2 183 303
30 % 2 183 324
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 72 387
95 % 3 72 505
90 % 3 72 534
70 % 3 84 503
50 % 3 168 323
40 % 3 168 332
30 % 3 168 349
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 268
95 % 2 103 354
90 % 2 103 372
70 % 2 105 399
50 % 2 105 456
40 % 2 105 484
30 % 2 105 501
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 262
95 % 2 108 328
90 % 2 108 345
70 % 2 183 265
50 % 2 197 256
40 % 2 197 267
30 % 2 197 281
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 305
95 % 2 95 402
90 % 2 102 377
70 % 2 104 404
50 % 2 185 281
40 % 2 186 291
30 % 2 186 309
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 256
95 % 2 106 334
90 % 2 108 340
70 % 2 108 389
50 % 2 195 259
40 % 2 195 272
30 % 2 195 285
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 266
95 % 2 103 349
90 % 2 105 355
70 % 2 105 396
50 % 2 186 289
40 % 2 191 287
30 % 2 191 305
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 293
95 % 2 97 391
90 % 2 97 408
70 % 2 100 419
50 % 2 185 286
40 % 2 186 297
30 % 2 186 312
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 283
95 % 2 101 377
90 % 2 103 382
70 % 2 103 414
50 % 2 176 319
40 % 2 177 320
30 % 2 178 332
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 295
95 % 2 97 389
90 % 2 99 398
70 % 2 99 423
50 % 2 175 318
40 % 2 181 315
30 % 2 188 303
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 72 456
95 % 2 72 597
90 % 2 72 629
70 % 2 73 650
50 % 2 73 683
40 % 2 73 715
30 % 2 74 717
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 263
95 % 2 104 346
90 % 2 106 353
70 % 2 197 240
50 % 2 198 251
40 % 2 198 264
30 % 2 198 274
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 368
95 % 2 77 480
90 % 2 89 455
70 % 2 181 261
50 % 2 191 255
40 % 2 195 258
30 % 2 204 254
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 64 477
95 % 2 66 627
90 % 2 66 654
70 % 2 67 680
50 % 2 67 720
40 % 2 114 489
30 % 2 114 511
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 425
95 % 2 77 556
90 % 2 78 573
70 % 2 78 599
50 % 2 78 638
40 % 2 80 655
30 % 2 81 669
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 249
95 % 2 108 324
90 % 2 110 335
70 % 2 110 381
50 % 2 193 266
40 % 2 193 278
30 % 2 193 291
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 302
95 % 2 97 397
90 % 2 99 403
70 % 2 99 435
50 % 2 171 326
40 % 2 184 298
30 % 2 186 314
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 95 309
95 % 2 98 387
90 % 2 100 393
70 % 2 100 418
50 % 2 188 275
40 % 2 189 284
30 % 2 191 296
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 329
95 % 2 89 432
90 % 2 91 440
70 % 2 91 466
50 % 2 91 505
40 % 2 91 540
30 % 2 91 566
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 103 261
95 % 3 103 341
90 % 3 105 351
70 % 3 105 392
50 % 3 146 363
40 % 3 146 374
30 % 3 146 388
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 276
95 % 2 101 364
90 % 2 101 385
70 % 2 103 410
50 % 2 185 283
40 % 2 185 296
30 % 2 185 316
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 265
95 % 2 104 348
90 % 2 104 368
70 % 2 106 395
50 % 2 189 274
40 % 2 193 279
30 % 2 194 287
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 102 274
95 % 2 102 362
90 % 2 102 383
70 % 2 104 408
50 % 2 181 308
40 % 2 183 311
30 % 2 183 328
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 361
95 % 2 79 462
90 % 2 91 432
70 % 2 91 462
50 % 2 201 234
40 % 2 201 244
30 % 2 201 258
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 300
95 % 2 97 400
90 % 2 97 412
70 % 2 99 430
50 % 2 170 329
40 % 2 170 335
30 % 2 170 354
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 253
95 % 2 107 330
90 % 2 107 347
70 % 2 109 387
50 % 2 188 282
40 % 2 199 261
30 % 2 201 268
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 294
95 % 2 102 365
90 % 2 102 386
70 % 2 104 411
50 % 2 104 461
40 % 2 178 316
30 % 2 178 331
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 104 264
95 % 2 104 343
90 % 2 104 366
70 % 2 148 306
50 % 2 193 264
40 % 2 193 276
30 % 2 193 289
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 303
95 % 2 97 401
90 % 2 97 416
70 % 2 99 437
50 % 2 99 484
40 % 2 106 472
30 % 2 106 493
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 278
95 % 2 101 363
90 % 2 101 384
70 % 2 176 276
50 % 2 189 273
40 % 2 191 282
30 % 2 192 294
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 543
95 % 1 50 730
90 % 1 50 766
70 % 1 96 467
50 % 1 96 506
40 % 1 96 541
30 % 1 96 567
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 346
95 % 2 81 460
90 % 2 81 490
70 % 2 163 284
50 % 2 163 334
40 % 2 163 344
30 % 2 163 361
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 307
95 % 2 94 408
90 % 2 96 410
70 % 2 174 279
50 % 2 181 298
40 % 2 182 306
30 % 2 182 326
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 308
95 % 2 94 406
90 % 2 94 422
70 % 2 96 444
50 % 2 184 285
40 % 2 185 293
30 % 23 208 256
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 374
95 % 2 77 485
90 % 2 77 509
70 % 2 89 489
50 % 2 182 296
40 % 2 187 289
30 % 2 187 306
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 95 370
95 % 3 95 481
90 % 3 107 456
70 % 3 107 484
50 % 3 171 360
40 % 3 171 371
30 % 3 171 385
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54937
95 % 1 43 1535
90 % 2 47 1454
70 % 2 48 1448
50 % 2 69 1016
40 % 2 69 1043
30 % 2 69 1093
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 372
95 % 2 76 483
90 % 2 88 460
70 % 2 88 485
50 % 2 188 272
40 % 2 188 285
30 % 2 191 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 70 Bg, Dg 60S ribosomal protein L34-A 4932 3.1.1 | Details
2 4U4R 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
3 4U3U 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
4 5TBW 35 AH, DI 60S ribosomal protein L34-A 4932 3.1.1 | Details
5 4U3M 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
6 4U3N 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
7 4U52 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
8 4U4Q 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
9 4U6F 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
10 4U4U 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
11 4U4Z 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
12 4U4Y 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
13 4U4N 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
14 4U55 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
15 5DAT 70 O4, o4 60S ribosomal protein L34-A (eL34) 4932 3.1.1 | Details
16 5I4L 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
17 4U51 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
18 6HHQ 35 AH, DI 60S ribosomal protein L34-A 4932 3.1.1 | Details
19 5OBM 35 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
20 4U53 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
21 5ON6 36 AH, DI 60S ribosomal protein L34-A 4932 3.1.1 | Details
22 4U50 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
23 5NDV 35 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
24 5LYB 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
25 4U56 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
26 5TGA 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
27 5MEI 36 AH, DI 60S ribosomal protein L34-A 4932 3.1.1 | Details
28 5FCJ 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
29 4U4O 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
30 5DGV 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
31 5DGE 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
32 5NDW 58 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
33 5NDG 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
34 5FCI 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
35 5DC3 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
36 5DGF 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
37 5TGM 70 O4, o4 60S ribosomal protein L34-A 4932 3.1.1 | Details
38 6Y6X 35 Lg 60S ribosomal protein L34 9606
39 6Y57 38 Lg 60S ribosomal protein L34 9606
40 6Y2L 38 Lg 60S ribosomal protein L34 9606
41 6Y0G 38 Lg 60S ribosomal protein L34 9606
42 6TNU 72 BN 60S ribosomal protein L34-A 4932 3.1.1 | Details
43 6UZ7 35 Bg KLLA0C08371p 28985
44 6TB3 72 BN 60S ribosomal protein L34-A 4932 3.1.1 | Details
45 6T83 68 R, gy 60S ribosomal protein L34-A 4932 3.1.1 | Details
46 6T7T 68 Lg 60S ribosomal protein L34-A 4932 3.1.1 | Details
47 6T7I 68 Lg 60S ribosomal protein L34-A 4932 3.1.1 | Details
48 6T59 32 g3 eL34 9986
49 6T4Q 67 Lg 60S ribosomal protein L34-A 4932 3.1.1 | Details
50 6SV4 69 BN, YN, ZN 60S ribosomal protein L34-A 4932 3.1.1 | Details
51 6SNT 68 aj 60S ribosomal protein L34-A 4932 3.1.1 | Details
52 6SGC 67 g2 eL34 9986
53 6S47 35 Ai 60S ribosomal protein L34-A 4932 3.1.1 | Details
54 6RZZ 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
55 6S05 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
56 6P5I 70 Ag eL34 9986
57 6P5J 70 Ag eL34 9986
58 6P5K 35 Ag eL34 9986
59 6P5N 35 Ag eL34 9986
60 6RI5 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
61 6OM7 68 h 60S ribosomal protein L34 9606
62 6OLZ 37 Ag 60S ribosomal protein L34 9606
63 6OM0 68 h 60S ribosomal protein L34 9606
64 6OLE 68 h 60S ribosomal protein L34 9606
65 6OLF 67 h 60S ribosomal protein L34 9606
66 6OLG 38 Ag 60S ribosomal protein L34 9606
67 6OLI 68 h 60S ribosomal protein L34 9606
68 6R84 4 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
69 6R86 3 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
70 6R87 3 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
71 6R7Q 62 g eL34 9986
72 6R6G 66 g eL34 9986
73 6R6P 35 g eL34 9986
74 6R5Q 38 g eL34 9986
75 6QZP 35 Lg 60S ribosomal protein L34 9606
76 6QTZ 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
77 6QT0 33 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
78 6QIK 32 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
79 6Q8Y 51 BN 60S ribosomal protein L34-A 4932 3.1.1 | Details
80 6N8J 15 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
81 6N8K 15 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
82 6N8L 15 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
83 6N8M 38 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
84 6N8N 41 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
85 6N8O 43 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
86 6I7O 69 BN, YN 60S ribosomal protein L34-A 4932 3.1.1 | Details
87 6IP5 35 2a 60S ribosomal protein L34 9606
88 6IP6 35 2a 60S ribosomal protein L34 9606
89 6IP8 35 2a 60S ribosomal protein L34 9606
90 6MTB 38 g 60S ribosomal protein L34 9986
91 6MTC 36 g 60S ribosomal protein L34 9986
92 6MTD 35 g eL34 9986
93 6MTE 35 g eL34 9986
94 6HD7 38 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
95 6HCQ 68 g3 eL34 9986
96 6HCJ 68 g3 eL34 9986
97 6HCM 67 g3 eL34 9986
98 6HCF 67 g3 eL34 9986
99 6GZ3 72 Ag ribosomal protein eL34 9986
100 6GZ4 72 Ag ribosomal protein eL34 9986
101 6GZ5 72 Ag ribosomal protein eL34 9986
102 6GQV 37 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
103 6GQ1 37 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
104 6GQB 37 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
105 6D9J 32 g eL34 9986
106 6D90 32 g eL34 9986
107 6FTG 32 g eL34 9986
108 6FTI 32 g eL34 9986
109 6FTJ 32 g eL34 9986
110 6FT6 33 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
111 6FRK 40 g Ribosomal protein eL34 9986
112 6CB1 28 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
113 6EM5 16 g 60S ribosomal protein L34-A Backbone model 4932 3.1.1 | Details
114 6ELZ 16 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
115 6EK0 35 Lg 60S ribosomal protein L34 9606
116 5MC6 80 BN 60S ribosomal protein L34-A 4932 3.1.1 | Details
117 5H4P 34 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
118 5M1J 50 g5 60S ribosomal protein L34-A 4932 3.1.1 | Details
119 5LZS 32 g eL34 9986
120 5LZT 32 g eL34 9986
121 5LZU 32 g eL34 9986
122 5LZV 32 g eL34 9986
123 5LZW 32 g eL34 9986
124 5LZX 32 g eL34 9986
125 5LZY 32 g eL34 9986
126 5LZZ 32 g eL34 9986
127 5T62 36 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
128 5T6R 35 t 60S ribosomal protein L34-A 4932 3.1.1 | Details
129 5T2C 21 a 60S ribosomal protein L34 9606
130 5LKS 35 Lg 60S ribosomal protein L34 9606
131 5JUO 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
132 5JUP 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
133 5JUS 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
134 5JUT 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
135 5JUU 38 LA eL34 (yeast L34) 4932 3.1.1 | Details
136 5JCS 10 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
137 5IT7 35 gg KLLA0C08371p 28985
138 3JCT 33 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
139 5GAK 24 i 60S ribosomal protein L34-A 4932 3.1.1 | Details
140 5FL8 31 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
141 5APN 35 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
142 5APO 35 g 60S ribosomal protein L34-A 4932 3.1.1 | Details
143 3JAN 25 g Ribosomal protein eL34 SEE REMARK 999 9986
144 3JAJ 25 g Ribosomal protein eL34 SEE REMARK 999 9986
145 3JAG 32 g eL34 9986
146 3JAH 32 g eL34 9986
147 3JAI 32 g eL34 9986
148 4UG0 35 Lg 60S RIBOSOMAL PROTEIN L34 9606
149 5AJ0 35 Ag 60S ribosomal protein L34 9606
150 3J92 32 g eL34 9986
151 4D67 32 g 60S RIBOSOMAL PROTEIN L34 9986
152 4D5Y 32 g 60S RIBOSOMAL PROTEIN EL34 9986
153 3J7O 35 g Ribosomal protein eL34 9823
154 3J7P 36 g Ribosomal protein eL34 9823
155 3J7Q 35 g Ribosomal protein eL34 9823
156 3J7R 35 g Ribosomal protein eL34 9823
157 4UJC 38 Bg 60S RIBOSOMAL PROTEIN L34 9986
158 4UJD 35 Ag 60S RIBOSOMAL PROTEIN L34 9986
159 3J77 34 84 60S ribosomal protein L34 4932 3.1.1 | Details
160 3J78 34 84 60S ribosomal protein L34 4932 3.1.1 | Details
161 3J6X 36 74 60S ribosomal protein L34 4932 3.1.1 | Details
162 3J6Y 36 74 60S ribosomal protein L34 4932 3.1.1 | Details
163 4UJE 69 Cg 60S RIBOSOMAL PROTEIN L34 9986
164 4V91 35 g EL34 RIBOSOMAL PROTEIN EL34 28985
165 4V7F 35 f 60S ribosomal protein L34 4932 3.1.1 | Details
166 4V8Y 67 Bg 60S RIBOSOMAL PROTEIN L34-A 4932 3.1.1 | Details
167 4V8Z 67 Bg 60S RIBOSOMAL PROTEIN L34-A 4932 3.1.1 | Details
168 4V6X 69 Cg 60S ribosomal protein L34 9606
169 4V8T 33 g 60S RIBOSOMAL PROTEIN L34-A 4932 3.1.1 | Details
170 4V6I 60 Bi 60S ribosomal protein rpL34 (L34e) 4932 3.1.1 | Details