4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 234 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 89 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 107 384
70 % 2 115 396
50 % 2 226 232
40 % 2 228 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 108 383
70 % 2 229 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 128 351
90 % 2 110 371
70 % 2 233 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 111 352
90 % 2 111 365
70 % 2 112 412
50 % 2 228 234
40 % 2 239 227
30 % 2 238 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 204 276
40 % 2 205 283
30 % 2 204 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 100 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 209 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 79 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 112 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 110 378
70 % 2 247 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 113 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 63 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 84 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 104 388
90 % 2 103 411
70 % 2 207 244
50 % 2 219 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 355
95 % 2 93 444
90 % 2 103 426
70 % 2 108 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 109 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 190 266
50 % 2 200 286
40 % 2 200 295
30 % 2 205 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 11 487
50 % 2 191 337
40 % 2 191 351
30 % 2 189 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 197 268
40 % 5 203 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 207 267
40 % 47 275 196
30 % 47 271 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 595
95 % 2 85 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 112 345
90 % 2 115 352
70 % 2 114 395
50 % 2 220 251
40 % 2 220 253
30 % 2 221 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 273
95 % 2 116 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 218 254
30 % 2 219 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 200 283
40 % 2 204 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 160 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 112 363
70 % 2 117 394
50 % 2 206 273
40 % 2 207 279
30 % 2 198 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 111 348
90 % 2 128 368
70 % 2 114 403
50 % 2 215 263
40 % 2 215 260
30 % 2 216 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 96 488
50 % 2 190 304
40 % 2 192 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 104 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 212 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 286
95 % 2 111 366
90 % 2 108 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 200 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 276
95 % 2 115 342
90 % 2 113 364
70 % 2 114 398
50 % 2 114 453
40 % 2 131 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 117 325
90 % 2 118 345
70 % 2 205 255
50 % 2 216 253
40 % 2 219 255
30 % 2 215 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 111 369
70 % 2 114 402
50 % 2 207 270
40 % 2 207 275
30 % 2 206 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 52 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 215 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 274
95 % 2 112 346
90 % 2 115 355
70 % 2 131 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 106 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 206 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 127 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 231 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 197 301
30 % 2 209 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 105 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 240 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 26 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 82 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 214 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 298
95 % 2 107 383
90 % 2 106 398
70 % 2 109 431
50 % 2 192 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 209 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 95 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 130 267
95 % 3 112 337
90 % 3 52 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 280
95 % 2 111 353
90 % 2 111 375
70 % 2 112 409
50 % 2 206 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 115 389
50 % 2 204 264
40 % 2 215 261
30 % 2 214 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 283
95 % 2 110 360
90 % 2 112 381
70 % 2 114 411
50 % 2 230 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 197 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 106 433
50 % 2 192 307
40 % 2 192 318
30 % 2 191 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 295
95 % 2 111 358
90 % 2 112 373
70 % 2 112 407
50 % 2 114 461
40 % 2 195 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 113 336
90 % 2 112 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 297
95 % 2 107 381
90 % 2 103 408
70 % 2 108 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 214 255
40 % 2 216 259
30 % 2 210 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 91 484
50 % 1 97 524
40 % 1 96 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 98 417
90 % 2 101 431
70 % 2 194 269
50 % 2 202 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 91 436
90 % 2 97 454
70 % 2 109 435
50 % 2 215 252
40 % 2 219 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 11 487
50 % 3 191 337
40 % 3 191 351
30 % 3 189 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 340
95 % 2 96 437
90 % 2 108 406
70 % 2 104 436
50 % 2 224 243
40 % 2 224 245
30 % 2 226 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 71 Bh, Dh 60S ribosomal protein L35-A 4932
2 4U4R 71 O5, o5 60S ribosomal protein L35-A 4932
3 4U3U 71 O5, o5 60S ribosomal protein L35-A 4932
4 5TBW 36 AI, DJ 60S ribosomal protein L35-A 4932
5 4U3M 71 O5, o5 60S ribosomal protein L35-A 4932
6 4U3N 71 O5, o5 60S ribosomal protein L35-A 4932
7 4U52 71 O5, o5 60S ribosomal protein L35-A 4932
8 4U4Q 71 O5, o5 60S ribosomal protein L35-A 4932
9 4U6F 71 O5, o5 60S ribosomal protein L35-A 4932
10 4U4U 71 O5, o5 60S ribosomal protein L35-A 4932
11 4U4Z 71 O5, o5 60S ribosomal protein L35-A 4932
12 4U4Y 71 O5, o5 60S ribosomal protein L35-A 4932
13 4U4N 71 O5, o5 60S ribosomal protein L35-A 4932
14 4U55 71 O5, o5 60S ribosomal protein L35-A 4932
15 5DAT 71 O5, o5 60S ribosomal protein L35-A 4932
16 5I4L 71 O5, o5 60S ribosomal protein L35-A 4932
17 4U51 71 O5, o5 60S ribosomal protein L35-A 4932
18 6HHQ 36 AI, DJ 60S ribosomal protein L35-A 4932
19 5OBM 36 O5, o5 60S ribosomal protein L35-A 4932
20 4U53 71 O5, o5 60S ribosomal protein L35-A 4932
21 5ON6 37 AI, DJ 60S ribosomal protein L35-A 4932
22 4U50 71 O5, o5 60S ribosomal protein L35-A 4932
23 5NDV 36 O5, o5 60S ribosomal protein L35-A 4932
24 5LYB 71 O5, o5 60S ribosomal protein L35-A 4932
25 4U56 71 O5, o5 60S ribosomal protein L35-A 4932
26 5TGA 71 O5, o5 60S ribosomal protein L35-A 4932
27 5MEI 37 AI, DJ 60S ribosomal protein L35-A 4932
28 5FCJ 71 O5, o5 60S ribosomal protein L35-A 4932
29 4U4O 71 O5, o5 60S ribosomal protein L35-A 4932
30 5DGV 71 O5, o5 60S ribosomal protein L35-A 4932
31 5DGE 71 O5, o5 60S ribosomal protein L35-A 4932
32 5NDW 59 O5, o5 60S ribosomal protein L35-A 4932
33 4V8P 42 BU, CU, EU, GU RPL35 5911
34 5NDG 71 O5, o5 60S ribosomal protein L35-A 4932
35 5FCI 71 O5, o5 60S ribosomal protein L35-A 4932
36 5DC3 71 O5, o5 60S ribosomal protein L35-A 4932
37 5DGF 71 O5, o5 60S ribosomal protein L35-A 4932
38 5TGM 71 O5, o5 60S ribosomal protein L35-A 4932
39 4V7R 58 Bc, Dc 60S ribosomal protein L35 4932
40 6ZMO 36 Lh 60S ribosomal protein L35 9606
41 6ZME 36 Lh 60S ribosomal protein L35 9606
42 6ZMI 36 Lh 60S ribosomal protein L35 9606
43 6ZM7 36 Lh 60S ribosomal protein L35 9606
44 6XIQ 40 h 60S ribosomal protein L35-A 4932
45 6XIR 38 h 60S ribosomal protein L35-A 4932
46 6Z6J 71 Lh 60S ribosomal protein L35-A 4932
47 6Z6K 71 Lh 60S ribosomal protein L35-A 4932
48 6Z6L 36 Lh 60S ribosomal protein L35 9606
49 6Z6M 36 Lh 60S ribosomal protein L35 9606
50 6Z6N 36 Lh 60S ribosomal protein L35 9606
51 6WOO 36 h uL29 4932
52 6YLG 39 h 60S ribosomal protein L35-A 4932
53 6YLH 39 h 60S ribosomal protein L35-A 4932
54 6YLX 30 h 60S ribosomal protein L35-A 4932
55 6YLY 16 h 60S ribosomal protein L35-A 4932
56 6W6L 35 i 60S ribosomal protein L35 9606
57 6M62 40 h 60S ribosomal protein L35-A 4932
58 6Y6X 36 Lh 60S ribosomal protein L35 9606
59 6Y57 39 Lh 60S ribosomal protein L35 9606
60 6Y2L 39 Lh 60S ribosomal protein L35 9606
61 6Y0G 39 Lh 60S ribosomal protein L35 9606
62 6LU8 17 H 60S ribosomal protein L35 9606
63 6LSR 15 H 60S ribosomal protein L35 9606
64 6LSS 15 H 60S ribosomal protein L35 9606
65 6LQM 14 H 60S ribosomal protein L35 9606
66 6TNU 73 BP 60S ribosomal protein L35-A 4932
67 6UZ7 36 Bh KLLA0F05247p 28985
68 6TB3 73 BP 60S ribosomal protein L35-A 4932
69 6T83 69 S, hb 60S ribosomal protein L35-A 4932
70 6T7T 69 Lh 60S ribosomal protein L35-A 4932
71 6T7I 69 Lh 60S ribosomal protein L35-A 4932
72 6T59 33 h3 uL29 9986
73 6T4Q 68 Lh 60S ribosomal protein L35-A 4932
74 6SXO 2 Lh 60S ribosomal protein L35 9606
75 6SV4 70 BP, YP, ZP 60S ribosomal protein L35-A 4932
76 6SNT 69 ai 60S ribosomal protein L35-A 4932
77 6SGC 68 h2 uL29 9986
78 6S47 36 Aj 60S ribosomal protein L35-A 4932
79 6RZZ 25 Z 60S ribosomal protein L35-A 4932
80 6S05 25 Z 60S ribosomal protein L35-A 4932
81 6P5I 71 Ah eL35 9986
82 6P5J 71 Ah eL35 9986
83 6P5K 36 Ah eL35 9986
84 6P5N 36 Ah eL35 9986
85 6RM3 33 LHH uL29 6039
86 6RI5 25 Z 60S ribosomal protein L35-A 4932
87 6OM7 69 i 60S ribosomal protein L35 9606
88 6OLZ 38 Ah 60S ribosomal protein L35 9606
89 6OM0 69 i 60S ribosomal protein L35 9606
90 6OLE 69 i 60S ribosomal protein L35 9606
91 6OLF 68 i 60S ribosomal protein L35 9606
92 6OLG 39 Ah 60S ribosomal protein L35 9606
93 6OLI 69 i 60S ribosomal protein L35 9606
94 6R84 6 j 60S ribosomal protein L35-A 4932
95 6R86 5 j 60S ribosomal protein L35-A 4932
96 6R87 5 j 60S ribosomal protein L35-A 4932
97 6R7Q 63 h uL29 9986
98 6R6G 67 h uL29 9986
99 6R6P 36 h uL29 9986
100 6R5Q 39 h uL29 9986
101 6QZP 36 Lh 60S ribosomal protein L35 9606
102 6QTZ 25 Z 60S ribosomal protein L35-A 4932
103 6QT0 26 Z 60S ribosomal protein L35-A 4932
104 6QIK 25 Z 60S ribosomal protein L35-A 4932
105 6Q8Y 53 BP 60S ribosomal protein L35-A 4932
106 6N8J 18 h 60S ribosomal protein L35-A 4932
107 6N8K 18 h 60S ribosomal protein L35-A 4932
108 6N8L 18 h 60S ribosomal protein L35-A 4932
109 6N8M 39 u 60S ribosomal protein L35-A 4932
110 6N8N 42 u 60S ribosomal protein L35-A 4932
111 6N8O 44 u 60S ribosomal protein L35-A 4932
112 6I7O 70 BP, YP 60S ribosomal protein L35-A 4932
113 6IP5 36 2b 60S ribosomal protein L35 9606
114 6IP6 36 2b 60S ribosomal protein L35 9606
115 6IP8 36 2b 60S ribosomal protein L35 9606
116 6MTB 39 h 60S ribosomal protein L35 9986
117 6MTC 37 h 60S ribosomal protein L35 9986
118 6MTD 36 h uL29 9986
119 6MTE 36 h uL29 9986
120 6HD7 39 j 60S ribosomal protein L35-A 4932
121 6HCQ 69 h3 uL29 9986
122 6HCJ 69 h3 uL29 9986
123 6HCM 68 h3 uL29 9986
124 6HCF 68 h3 uL29 9986
125 6GZ3 73 Ah ribosomal protein uL29 9986
126 6GZ4 73 Ah ribosomal protein uL29 9986
127 6GZ5 73 Ah ribosomal protein uL29 9986
128 6GQV 38 h 60S ribosomal protein L35-A 4932
129 6GQ1 38 h 60S ribosomal protein L35-A 4932
130 6GQB 38 h 60S ribosomal protein L35-A 4932
131 6D9J 33 h eL35 9986
132 6D90 33 h eL35 9986
133 6FTG 33 h eL29 9986
134 6FTI 33 h uL29 9986
135 6FTJ 33 h uL29 9986
136 6FT6 34 h 60S ribosomal protein L35-A 4932
137 6FRK 41 h Ribosomal protein uL29 9986
138 6CB1 29 h 60S ribosomal protein L35-A 4932
139 5Z3G 33 l 60S ribosomal protein L35-A 4932
140 6C0F 28 h 60S ribosomal protein L35-A 4932
141 6EM1 22 h 60S ribosomal protein L35-A 4932
142 6EM3 14 h 60S ribosomal protein L35-A Backbone model 4932
143 6EM4 17 h 60S ribosomal protein L35-A Backbone model 4932
144 6EM5 26 h 60S ribosomal protein L35-A Backbone model 4932
145 6ELZ 26 h 60S ribosomal protein L35-A 4932
146 6EK0 36 Lh 60S ribosomal protein L35 9606
147 6AZ3 27 a ribosomal protein uL29 5661
148 5XY3 36 h Ribosomal protein L29, putative 5722
149 5XXB 36 g Ribosomal protein uL29 5811
150 5UMD 30 3 60S ribosomal protein L35, putative 5833
151 5MC6 82 BP 60S ribosomal protein L35-A 4932
152 5H4P 35 h 60S ribosomal protein L35-A 4932
153 5M1J 52 h5 60S ribosomal protein L35-A 4932
154 5LZS 33 h uL29 9986
155 5LZT 33 h uL29 9986
156 5LZU 33 h uL29 9986
157 5LZV 33 h uL29 9986
158 5LZW 33 h uL29 9986
159 5LZX 33 h uL29 9986
160 5LZY 33 h uL29 9986
161 5LZZ 33 h uL29 9986
162 5T62 37 u 60S ribosomal protein L35-A 4932
163 5T6R 36 u 60S ribosomal protein L35-A 4932
164 5T5H 34 k 60S ribosomal protein L35 5693
165 5T2A 35 i uL29 5661
166 5T2C 22 b 60S ribosomal protein L35 9606
167 5LKS 36 Lh 60S ribosomal protein L35 9606
168 5JUO 39 MA uL29 (yeast L35) 4932
169 5JUP 39 MA uL29 (yeast L35) 4932
170 5JUS 39 MA uL29 (yeast L35) 4932
171 5JUT 39 MA uL29 (yeast L35) 4932
172 5JUU 39 MA uL29 (yeast L35) 4932
173 5JCS 12 h 60S ribosomal protein L35-A 4932
174 5IT7 36 hh KLLA0F05247p 28985
175 3JCT 34 h 60S ribosomal protein L35-A 4932
176 3JCS 35 a ribosomal protein L29 5661
177 5GAK 26 j 60S ribosomal protein L35-A 4932
178 5FL8 32 h 60S ribosomal protein L35-A 4932
179 5APN 36 h 60S ribosomal protein L35-A 4932
180 5APO 36 h 60S ribosomal protein L35-A 4932
181 3JBN 67 A3 60S ribosomal protein uL29 5833
182 3JBO 67 A3 60S ribosomal protein uL29 5833
183 3JBP 67 A3 60S ribosomal protein uL29 5833
184 3JAN 26 h Ribosomal protein uL29 SEE REMARK 999 9986
185 3JAJ 26 h Ribosomal protein uL29 SEE REMARK 999 9986
186 3JAG 33 h uL29 9986
187 3JAH 33 h uL29 9986
188 3JAI 33 h uL29 9986
189 4UG0 36 Lh 60S RIBOSOMAL PROTEIN L35 9606
190 5AJ0 36 Ah 60S ribosomal protein L35 9606
191 3J92 33 h uL29 9986
192 4D67 33 h 60S RIBOSOMAL PROTEIN L35 9986
193 4D5Y 33 h 60S RIBOSOMAL PROTEIN UL29 9986
194 4V3P 77 Lc 60S ribosomal protein L35 4565
195 3J7O 36 h Ribosomal protein uL29 9823
196 3J7P 37 h Ribosomal protein uL29 9823
197 3J7Q 36 h Ribosomal protein uL29 9823
198 3J7R 36 h Ribosomal protein uL29 9823
199 4UJC 39 Bh 60S RIBOSOMAL PROTEIN UL29 9986
200 4UJD 36 Ah 60S RIBOSOMAL PROTEIN L35 9986
201 3J79 30 3 60S ribosomal protein uL29 5833
202 3J77 35 85 60S ribosomal protein L35 4932
203 3J78 35 85 60S ribosomal protein L35 4932
204 3J6X 37 75 60S ribosomal protein L35 4932
205 3J6Y 37 75 60S ribosomal protein L35 4932
206 4UJE 70 Ch 60S RIBOSOMAL PROTEIN L35 9986
207 4V91 36 h UL29 RIBOSOMAL PROTEIN UL29 28985
208 4V7F 29 Z 60S ribosomal protein L35 4932
209 4V7E 68 Ch 60S ribosomal protein L29 4565
210 4V8Y 68 Bh 60S RIBOSOMAL PROTEIN L35-B 4932
211 4V8Z 68 Bh 60S RIBOSOMAL PROTEIN L35-B 4932
212 4V6W 61 Ch 60S ribosomal protein L35 7227
213 4V6X 61 Ch 60S ribosomal protein L35 9606
214 4V8M 70 Bk 60S RIBOSOMAL PROTEIN L35, PUTATIVE 185431
215 4V8T 34 h 60S RIBOSOMAL PROTEIN L35-A 4932
216 4V6I 55 Bc 60S ribosomal protein rpL35 (L29p) 4932
217 2WW9 14 N 60S RIBOSOMAL PROTEIN L35 4932
218 2WWA 14 N 60S RIBOSOMAL PROTEIN L35 4932
219 2WWB 14 N 60S RIBOSOMAL PROTEIN L35 4565
220 4V5Z 75 Bv 60S Ribosomal protein L35 9612
221 2J37 2 5 RIBOSOMAL PROTEIN L35 4569
222 2GO5 7 5 ribosomal protein L35 4569
223 4V4B 44 BX 60S ribosomal protein L35 4932