4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 234 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 89 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 107 384
70 % 2 115 396
50 % 2 226 232
40 % 2 228 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 108 383
70 % 2 229 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 128 351
90 % 2 110 371
70 % 2 233 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 111 352
90 % 2 111 365
70 % 2 112 412
50 % 2 228 234
40 % 2 239 227
30 % 2 238 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 204 276
40 % 2 205 283
30 % 2 204 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 100 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 209 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 79 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 77 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 112 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 110 378
70 % 2 247 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 113 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 63 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 84 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 104 388
90 % 2 103 411
70 % 2 207 244
50 % 2 219 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 355
95 % 2 93 444
90 % 2 103 426
70 % 2 108 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 109 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 190 266
50 % 2 200 286
40 % 2 200 295
30 % 2 205 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 11 487
50 % 2 191 337
40 % 2 191 351
30 % 2 189 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 197 268
40 % 5 203 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 207 267
40 % 47 275 196
30 % 47 271 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 595
95 % 2 85 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 112 345
90 % 2 115 352
70 % 2 114 395
50 % 2 220 251
40 % 2 220 253
30 % 2 221 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 273
95 % 2 116 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 218 254
30 % 2 219 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 200 283
40 % 2 204 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 160 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 112 363
70 % 2 117 394
50 % 2 206 273
40 % 2 207 279
30 % 2 198 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 111 348
90 % 2 128 368
70 % 2 114 403
50 % 2 215 263
40 % 2 215 260
30 % 2 216 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 96 488
50 % 2 190 304
40 % 2 192 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 104 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 212 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 286
95 % 2 111 366
90 % 2 108 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 200 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 276
95 % 2 115 342
90 % 2 113 364
70 % 2 114 398
50 % 2 114 453
40 % 2 131 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 117 325
90 % 2 118 345
70 % 2 205 255
50 % 2 216 253
40 % 2 219 255
30 % 2 215 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 111 369
70 % 2 114 402
50 % 2 207 270
40 % 2 207 275
30 % 2 206 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 52 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 215 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 274
95 % 2 112 346
90 % 2 115 355
70 % 2 131 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 106 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 206 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 127 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 231 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 197 301
30 % 2 209 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 105 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 240 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 26 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 82 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 214 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 298
95 % 2 107 383
90 % 2 106 398
70 % 2 109 431
50 % 2 192 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 209 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 95 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 130 267
95 % 3 112 337
90 % 3 52 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 280
95 % 2 111 353
90 % 2 111 375
70 % 2 112 409
50 % 2 206 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 115 389
50 % 2 204 264
40 % 2 215 261
30 % 2 214 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 283
95 % 2 110 360
90 % 2 112 381
70 % 2 114 411
50 % 2 230 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 197 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 106 433
50 % 2 192 307
40 % 2 192 318
30 % 2 191 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 295
95 % 2 111 358
90 % 2 112 373
70 % 2 112 407
50 % 2 114 461
40 % 2 195 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 113 336
90 % 2 112 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 297
95 % 2 107 381
90 % 2 103 408
70 % 2 108 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 110 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 214 255
40 % 2 216 259
30 % 2 210 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 91 484
50 % 1 97 524
40 % 1 96 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 98 417
90 % 2 101 431
70 % 2 194 269
50 % 2 202 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 91 436
90 % 2 97 454
70 % 2 109 435
50 % 2 215 252
40 % 2 219 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 11 487
50 % 3 191 337
40 % 3 191 351
30 % 3 189 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 340
95 % 2 96 437
90 % 2 108 406
70 % 2 104 436
50 % 2 224 243
40 % 2 224 245
30 % 2 226 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V88 78 Bo, Do 60S ribosomal protein L42-A 4932
2 4U4R 78 Q2, q2 60S ribosomal protein L42-A 4932
3 4U3U 78 Q2, q2 60S ribosomal protein L42-A 4932
4 5TBW 43 AP, DQ 60S ribosomal protein L42-A 4932
5 4U3M 78 Q2, q2 60S ribosomal protein L42-A 4932
6 4U3N 78 Q2, q2 60S ribosomal protein L42-A 4932
7 4U52 78 Q2, q2 60S ribosomal protein L42-A 4932
8 4U4Q 78 Q2, q2 60S ribosomal protein L42-A 4932
9 4U6F 78 Q2, q2 60S ribosomal protein L42-A 4932
10 4U4U 78 Q2, q2 60S ribosomal protein L42-A 4932
11 4U4Z 78 Q2, q2 60S ribosomal protein L42-A 4932
12 4U4Y 78 Q2, q2 60S ribosomal protein L42-A 4932
13 4U4N 78 Q2, q2 60S ribosomal protein L42-A 4932
14 4U55 78 Q2, q2 60S ribosomal protein L42-A 4932
15 5DAT 78 Q2, q2 60S ribosomal protein L42-A 4932
16 5I4L 78 Q2, q2 60S ribosomal protein L42-A 4932
17 4U51 78 Q2, q2 60S ribosomal protein L42-A 4932
18 6HHQ 43 AP, DQ 60S ribosomal protein L42-A 4932
19 5OBM 43 Q2, q2 60S ribosomal protein L42-A 4932
20 4U53 78 Q2, q2 60S ribosomal protein L42-A 4932
21 5ON6 44 AP, DQ 60S ribosomal protein L42-A 4932
22 4U50 78 Q2, q2 60S ribosomal protein L42-A 4932
23 5NDV 43 Q2, q2 60S ribosomal protein L42-A 4932
24 5LYB 78 Q2, q2 60S ribosomal protein L42-A 4932
25 4U56 78 Q2, q2 60S ribosomal protein L42-A 4932
26 5TGA 78 Q2, q2 60S ribosomal protein L42-A 4932
27 5MEI 44 AP, DQ 60S ribosomal protein L42-A 4932
28 5FCJ 78 Q2, q2 60S ribosomal protein L42-A 4932
29 4U4O 78 Q2, q2 60S ribosomal protein L42-A 4932
30 5DGV 78 Q2, q2 60S ribosomal protein L42-A 4932
31 5DGE 78 Q2, q2 60S ribosomal protein L42-A 4932
32 5NDW 66 Q2, q2 60S ribosomal protein L42-A 4932
33 4V8P 4 AC, DC, FC, HC 60S RIBOSOMAL PROTEIN L36A 5911
34 5NDG 78 Q2, q2 60S ribosomal protein L42-A 4932
35 5FCI 78 Q2, q2 60S ribosomal protein L42-A 4932
36 5DC3 78 Q2, q2 60S ribosomal protein L42-A 4932
37 5DGF 78 Q2, q2 60S ribosomal protein L42-A 4932
38 5TGM 78 Q2, q2 60S ribosomal protein L42-A 4932
39 4V7R 61 Bf, Df 60S ribosomal protein L42 4932
40 6ZMO 43 Lo 60S ribosomal protein L36a 9606
41 6ZME 43 Lo 60S ribosomal protein L36a 9606
42 6ZMI 43 Lo 60S ribosomal protein L36a 9606
43 6ZM7 43 Lo 60S ribosomal protein L36a 9606
44 6XIQ 47 o 60S ribosomal protein L42-A 4932
45 6XIR 44 o 60S ribosomal protein L42-A 4932
46 6Z6J 78 Lo 60S ribosomal protein L42-A 4932
47 6Z6K 78 Lo 60S ribosomal protein L42-A 4932
48 6Z6L 43 Lo 60S ribosomal protein L36a 9606
49 6Z6M 43 Lo 60S ribosomal protein L36a 9606
50 6Z6N 43 Lo 60S ribosomal protein L36a 9606
51 6WOO 43 o eL42 4932
52 6W6L 41 p 60S ribosomal protein L36a 9606
53 6Y6X 43 Lo 60S ribosomal protein L36a 9606
54 6Y57 46 Lo 60S ribosomal protein L36a 9606
55 6Y2L 46 Lo 60S ribosomal protein L36a 9606
56 6Y0G 46 Lo 60S ribosomal protein L36a 9606
57 6LU8 30 W 60S ribosomal protein L36a 9606
58 6LSR 28 W 60S ribosomal protein L36a 9606
59 6LSS 28 W 60S ribosomal protein L36a 9606
60 6LQM 29 W 60S ribosomal protein L36a 9606
61 6TNU 80 AP 60S ribosomal protein L42-A 4932
62 6UZ7 43 Bo 60S ribosomal protein L44 28985
63 6TB3 80 AP 60S ribosomal protein L42-A 4932
64 6T83 76 Z, ob 60S ribosomal protein L42-A 4932
65 6T7T 76 Lo 60S ribosomal protein L42-A 4932
66 6T7I 76 Lo 60S ribosomal protein L42-A 4932
67 6T59 40 o3 eL42 9986
68 6T4Q 75 Lo 60S ribosomal protein L42-A 4932
69 6SV4 77 AP, XP, zP 60S ribosomal protein L42-A 4932
70 6SNT 76 ab 60S ribosomal protein L42-A 4932
71 6SGC 75 o2 eL42 9986
72 6S47 43 Aq 60S ribosomal protein L42-A 4932
73 6RZZ 37 l 60S ribosomal protein L42-A 4932
74 6S05 37 l 60S ribosomal protein L42-A 4932
75 6P5I 78 Ao eL42 9986
76 6P5J 78 Ao eL42 9986
77 6P5K 43 Ao eL42 9986
78 6P5N 43 Ao eL42 9986
79 6RM3 52 LOO eL42 6039
80 6RI5 37 l 60S ribosomal protein L42-A 4932
81 6OM7 76 p 60S ribosomal protein L36a 9606
82 6OLZ 45 Ao 60S ribosomal protein L36a 9606
83 6OM0 76 p 60S ribosomal protein L36a 9606
84 6OLE 76 p 60S ribosomal protein L36a 9606
85 6OLF 75 p 60S ribosomal protein L36a 9606
86 6OLG 46 Ao 60S ribosomal protein L36a 9606
87 6OLI 76 p 60S ribosomal protein L36a 9606
88 6R84 36 C 60S ribosomal protein L42-A 4932
89 6R86 34 C 60S ribosomal protein L42-A 4932
90 6R87 35 C 60S ribosomal protein L42-A 4932
91 6R7Q 70 o eL42 9986
92 6R6G 74 o eL42 9986
93 6R6P 43 o eL42 9986
94 6R5Q 46 o eL42 9986
95 6QZP 43 Lo 60S ribosomal protein L36a 9606
96 6QTZ 37 l 60S ribosomal protein L42-A 4932
97 6QT0 38 l 60S ribosomal protein L42-A 4932
98 6QIK 37 l 60S ribosomal protein L42-A 4932
99 6Q8Y 17 AP 60S ribosomal protein L42-A 4932
100 6N8J 45 q 60S ribosomal protein L42-A 4932
101 6N8K 44 q 60S ribosomal protein L42-A 4932
102 6N8L 44 q 60S ribosomal protein L42-A 4932
103 6N8M 16 Q 60S ribosomal protein L42-A 4932
104 6N8N 19 Q 60S ribosomal protein L42-A 4932
105 6N8O 21 Q 60S ribosomal protein L42-A 4932
106 6I7O 77 AP, XP 60S ribosomal protein L42-A 4932
107 6IP5 43 2i 60S ribosomal protein L36a 9606
108 6IP6 43 2i 60S ribosomal protein L36a 9606
109 6IP8 43 2i 60S ribosomal protein L36a 9606
110 6MTB 46 o 60S ribosomal protein L36a 9986
111 6MTC 44 o 60S ribosomal protein L36a 9986
112 6MTD 43 o eL42 9986
113 6MTE 43 o eL42 9986
114 6HD7 6 C 60S ribosomal protein L42-A 4932
115 6HCQ 76 o3 eL42 9986
116 6HCJ 76 o3 eL42 9986
117 6HCM 75 o3 eL42 9986
118 6HCF 75 o3 eL42 9986
119 6GZ3 80 Ao ribosomal protein eL42 9986
120 6GZ4 80 Ao ribosomal protein eL42 9986
121 6GZ5 80 Ao ribosomal protein eL42 9986
122 6GQV 45 o 60S ribosomal protein L42-A 4932
123 6GQ1 45 o 60S ribosomal protein L42-A 4932
124 6GQB 45 o 60S ribosomal protein L42-A 4932
125 6D9J 40 o eL42 9986
126 6D90 40 o eL42 9986
127 6FTG 40 o eL42 9986
128 6FTI 40 o eL42 9986
129 6FTJ 40 o eL42 9986
130 6FRK 48 o Ribosomal protein eL42 9986
131 6EK0 43 Lo 60S ribosomal protein L36a 9606
132 6AZ3 42 p ribosomal protein eL44 5661
133 5XY3 42 o 60S ribosomal protein L44, putative 5722
134 5XXB 42 n Ribosomal protein eL42 5811
135 5UMD 45 i 60S ribosomal protein L44 5833
136 5MC6 56 AP 60S ribosomal protein L42-A 4932
137 5H4P 40 o 60S ribosomal protein L42-A 4932
138 5M1J 64 o5 60S ribosomal protein L42-B 4932
139 5LZS 40 o eL42 9986
140 5LZT 40 o eL42 9986
141 5LZU 40 o eL42 9986
142 5LZV 40 o eL42 9986
143 5LZW 40 o eL42 9986
144 5LZX 40 o eL42 9986
145 5LZY 40 o eL42 9986
146 5LZZ 40 o eL42 9986
147 5T62 43 Q 60S ribosomal protein L42-A 4932
148 5T6R 42 Q 60S ribosomal protein L42-A 4932
149 5T5H 42 t 60S ribosomal protein L44 5693
150 5T2A 44 r eL42 5661
151 5T2C 39 i 60S ribosomal protein L36a 9606
152 5LKS 43 Lo 60S ribosomal protein L36a 9606
153 5JUO 46 TA eL42 (yeast L42) 4932
154 5JUP 46 TA eL42 (yeast L42) 4932
155 5JUS 46 TA eL42 (yeast L42) 4932
156 5JUT 46 TA eL42 (yeast L42) 4932
157 5JUU 46 TA eL42 (yeast L42) 4932
158 5IT7 43 oo 60S ribosomal protein L44 28985
159 3JCS 48 n ribosomal protein L44e 5661
160 5GAK 11 C 60S ribosomal protein L42-A 4932
161 5APN 42 o 60S ribosomal protein L42-A 4932
162 5APO 42 o 60S ribosomal protein L42-A 4932
163 3JBN 53 Ai 60S ribosomal protein eL44 5833
164 3JBO 40 Ai 60S ribosomal protein eL44 5833
165 3JBP 53 Ai 60S ribosomal protein eL44 5833
166 3JAN 31 o Ribosomal protein eL42 SEE REMARK 999 9986
167 3JAJ 31 o Ribosomal protein eL42 SEE REMARK 999 9986
168 3JAG 40 o eL42 9986
169 3JAH 40 o eL42 9986
170 3JAI 40 o eL42 9986
171 4UG0 43 Lo 60S RIBOSOMAL PROTEIN L36A 9606
172 5AJ0 43 Ao 60S ribosomal protein L36a 9606
173 3J92 39 o eL42 9986
174 4D67 40 o 60S RIBOSOMAL PROTEIN L36A 9986
175 4D5Y 40 o 60S RIBOSOMAL PROTEIN EL44 9986
176 4V3P 60 Lr 60S ribosomal protein L44 4565
177 3J7O 43 o Ribosomal protein eL42 9823
178 3J7P 44 o Ribosomal protein eL42 9823
179 3J7Q 43 o Ribosomal protein eL42 9823
180 3J7R 43 o Ribosomal protein eL42 9823
181 4UJC 46 Bo 60S RIBOSOMAL PROTEIN L36A 9986
182 4UJD 43 Ao 60S RIBOSOMAL PROTEIN L36A 9986
183 3J79 45 i 60S ribosomal protein eL44 5833
184 3J77 42 92 60S ribosomal protein L42 4932
185 3J78 42 92 60S ribosomal protein L42 4932
186 3J6X 44 82 60S ribosomal protein L42 4932
187 3J6Y 44 82 60S ribosomal protein L42 4932
188 4UJE 77 Co 60S RIBOSOMAL PROTEIN L36A 9986
189 4V91 43 o EL42 RIBOSOMAL PROTEIN EL42 28985
190 4V7E 60 Co 60S ribosomal protein L44E 4565
191 4V8Y 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932
192 4V8Z 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932
193 4V6W 78 Co 60S ribosomal protein L36A 7227
194 4V6X 78 Co 60S ribosomal protein L36a 9606
195 4V8M 79 Bt 60S RIBOSOMAL PROTEIN L44 185431
196 4V8T 41 o 60S RIBOSOMAL PROTEIN L42-A 4932
197 3J0O 24 F Ribosomal protein L36a 9986
198 3J0L 26 F Ribosomal protein L36a 9986
199 4V6I 69 Br 60S ribosomal protein rpL42 (L44e) 4932
200 4V7H 50 BZ 60S ribosomal protein L42 5541
201 4V5Z 84 B4 60S Ribosomal protein L44e 9612
202 4V4B 46 BZ 60S ribosomal protein L42 4932