4U4R

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 4U4R

Entity #1 | Chains: 2,6
18S ribosomal RNA rna, length: 1800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: S8,s8
40S ribosomal protein S8-A protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 366
95 % 2 90 464
90 % 2 96 453
70 % 2 113 413
50 % 2 227 236
40 % 2 231 237
30 % 2 231 244
Entity #11 | Chains: S9,s9
40S ribosomal protein S9-A protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 317
95 % 2 101 406
90 % 2 113 358
70 % 2 223 234
50 % 2 238 223
40 % 2 249 217
30 % 2 249 223
Entity #12 | Chains: C0,c0
40S ribosomal protein S10-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1549
95 % 2 71 622
90 % 2 74 602
70 % 2 90 523
50 % 2 90 554
40 % 2 90 593
30 % 2 90 619
Entity #13 | Chains: C1,c1
40S ribosomal protein S11-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 328
95 % 2 98 422
90 % 2 110 384
70 % 2 115 396
50 % 2 234 232
40 % 2 234 233
30 % 2 234 241
Entity #14 | Chains: C2,c2
40S ribosomal protein S12 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 38 1072
95 % 2 56 760
90 % 2 58 746
70 % 2 92 495
50 % 2 92 530
40 % 2 95 552
30 % 2 95 581
Entity #15 | Chains: C3,c3
40S ribosomal protein S13 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 329
95 % 2 98 425
90 % 2 110 383
70 % 2 232 227
50 % 2 235 231
40 % 2 247 218
30 % 2 247 224
Entity #16 | Chains: C4,c4
40S ribosomal protein S14-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 70 504
95 % 2 112 351
90 % 2 112 371
70 % 2 236 218
50 % 2 237 226
40 % 2 237 228
30 % 2 237 235
Entity #17 | Chains: C5,c5
40S ribosomal protein S15 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 62 535
95 % 2 72 534
90 % 2 72 560
70 % 2 91 489
50 % 2 201 284
40 % 2 212 268
30 % 2 212 280
Entity #18 | Chains: C6,c6
40S ribosomal protein S16-A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 100 314
95 % 2 112 352
90 % 2 113 365
70 % 2 113 412
50 % 2 228 234
40 % 2 239 227
30 % 2 240 230
Entity #19 | Chains: C7,c7
40S ribosomal protein S17-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 76 409
95 % 2 76 525
90 % 2 88 492
70 % 2 88 518
50 % 2 202 276
40 % 2 202 283
30 % 2 202 297
Entity #2 | Chains: S0,s0
40S ribosomal protein S0-A protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 52 622
95 % 2 55 779
90 % 2 55 808
70 % 2 63 756
50 % 2 72 712
40 % 2 141 397
30 % 2 141 412
Entity #20 | Chains: C8,c8
40S ribosomal protein S18-A protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 89 360
95 % 2 90 453
90 % 2 102 425
70 % 2 215 241
50 % 2 224 239
40 % 2 236 230
30 % 2 237 237
Entity #21 | Chains: C9,c9
40S ribosomal protein S19-A protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 84 374
95 % 2 84 475
90 % 2 84 496
70 % 2 96 470
50 % 2 97 502
40 % 2 201 291
30 % 2 204 284
Entity #22 | Chains: D0,d0
40S ribosomal protein S20 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 384
95 % 2 80 492
90 % 2 80 512
70 % 2 92 482
50 % 2 92 523
40 % 2 94 527
30 % 2 94 557
Entity #23 | Chains: D1,d1
40S ribosomal protein S21-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 79 398
95 % 2 79 503
90 % 2 91 472
70 % 2 91 496
50 % 2 200 287
40 % 2 200 298
30 % 2 200 310
Entity #24 | Chains: D2,d2
40S ribosomal protein S22-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 351
95 % 2 114 341
90 % 2 114 360
70 % 2 238 220
50 % 2 240 222
40 % 3 252 213
30 % 38 896 20
Entity #25 | Chains: D3,d3
40S ribosomal protein S23-A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 325
95 % 2 111 357
90 % 2 111 378
70 % 2 242 211
50 % 2 255 204
40 % 2 255 210
30 % 2 255 220
Entity #26 | Chains: D4,d4
40S ribosomal protein S24-A protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 98 332
95 % 2 98 426
90 % 2 110 389
70 % 2 115 401
50 % 2 229 238
40 % 2 229 240
30 % 2 229 250
Entity #27 | Chains: D5,d5
40S ribosomal protein S25-A protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 56 583
95 % 2 56 765
90 % 2 56 798
70 % 2 64 747
50 % 2 64 781
40 % 2 64 806
30 % 2 66 836
Entity #28 | Chains: D6,d6
40S ribosomal protein S26-B protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 49 598
95 % 1 49 784
90 % 1 53 773
70 % 1 53 798
50 % 1 91 550
40 % 1 91 587
30 % 1 91 613
Entity #29 | Chains: D7,d7
40S ribosomal protein S27-A protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 348
95 % 2 106 388
90 % 2 106 411
70 % 2 212 244
50 % 2 224 241
40 % 2 224 243
30 % 2 224 251
Entity #3 | Chains: S1,s1
40S ribosomal protein S1-A protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 355
95 % 2 93 444
90 % 2 103 426
70 % 2 110 424
50 % 2 116 440
40 % 2 197 293
30 % 2 197 307
Entity #30 | Chains: D8,d8
40S ribosomal protein S28-A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 92 361
95 % 2 111 354
90 % 2 111 374
70 % 2 229 229
50 % 2 243 214
40 % 2 244 219
30 % 2 244 226
Entity #31 | Chains: D9,d9
40S ribosomal protein S29-A protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 78 392
95 % 2 78 500
90 % 2 79 517
70 % 2 192 266
50 % 2 200 286
40 % 2 200 295
30 % 2 200 305
Entity #32 | Chains: E0
40S ribosomal protein S30-A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 383
95 % 2 99 493
90 % 2 111 466
70 % 2 111 487
50 % 2 191 337
40 % 2 191 351
30 % 2 191 368
Entity #33 | Chains: E1,e1
Ubiquitin-40S ribosomal protein S31 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 39 807
95 % 1 44 973
90 % 1 44 1005
70 % 1 83 605
50 % 1 87 615
40 % 1 87 660
30 % 1 87 682
Entity #34 | Chains: SR,sR
Guanine nucleotide-binding protein subunit beta-like protein protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 76 402
95 % 3 83 462
90 % 3 83 480
70 % 3 83 504
50 % 5 199 268
40 % 5 205 256
30 % 5 206 266
Entity #35 | Chains: SM,sM
Suppressor protein STM1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1105
95 % 1 27 1425
90 % 1 27 1472
70 % 3 33 1296
50 % 3 33 1328
40 % 3 33 1362
30 % 3 33 1401
Entity #36 | Chains: 1,5
25S ribosomal RNA rna, length: 3396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: 3,7
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #38 | Chains: 4,8
5.8S ribosomal RNA rna, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #39 | Chains: L2,l2
60S ribosomal protein L2-A protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 106 300
95 % 2 106 382
90 % 2 108 397
70 % 2 195 268
50 % 2 208 267
40 % 47 282 196
30 % 47 282 206
Entity #4 | Chains: S2,s2
40S ribosomal protein S2 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 55 595
95 % 2 55 774
90 % 2 55 803
70 % 2 63 761
50 % 2 70 735
40 % 2 70 762
30 % 2 70 805
Entity #40 | Chains: L3,l3
60S ribosomal protein L3 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 288
95 % 2 113 345
90 % 2 115 352
70 % 2 115 395
50 % 2 220 251
40 % 2 220 253
30 % 2 222 260
Entity #41 | Chains: L4,l4
60S ribosomal protein L4-A protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 273
95 % 2 117 327
90 % 2 117 346
70 % 2 119 379
50 % 2 167 341
40 % 2 220 254
30 % 2 220 264
Entity #42 | Chains: L5,l5
60S ribosomal protein L5 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 312
95 % 2 103 400
90 % 2 103 420
70 % 2 105 440
50 % 2 203 283
40 % 2 205 284
30 % 2 205 298
Entity #43 | Chains: L6,l6
60S ribosomal protein L6-A protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 292
95 % 2 112 350
90 % 2 113 362
70 % 2 116 390
50 % 2 117 434
40 % 2 121 449
30 % 2 121 464
Entity #44 | Chains: L7,l7
60S ribosomal protein L7-A protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 272
95 % 2 113 344
90 % 2 113 363
70 % 2 115 394
50 % 2 207 273
40 % 2 207 279
30 % 2 206 296
Entity #45 | Chains: L8,l8
60S ribosomal protein L8-A protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 109 311
95 % 2 116 347
90 % 2 116 361
70 % 2 118 393
50 % 2 191 308
40 % 2 193 317
30 % 2 193 332
Entity #46 | Chains: L9,l9
60S ribosomal protein L9-A protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 279
95 % 2 112 348
90 % 2 112 368
70 % 2 114 403
50 % 2 215 263
40 % 2 216 260
30 % 2 218 270
Entity #47 | Chains: M0,m0
60S ribosomal protein L10 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 88 365
95 % 2 88 460
90 % 2 90 467
70 % 2 90 488
50 % 2 190 304
40 % 2 190 316
30 % 2 190 328
Entity #48 | Chains: M1,m1
60S ribosomal protein L11-B protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 1143
95 % 2 106 385
90 % 2 108 401
70 % 3 206 252
50 % 3 210 266
40 % 3 210 271
30 % 3 210 283
Entity #49 | Chains: M3,m3
60S ribosomal protein L13-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 286
95 % 2 111 366
90 % 2 111 387
70 % 2 113 416
50 % 2 113 462
40 % 2 205 288
30 % 2 205 300
Entity #5 | Chains: S3,s3
40S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 78 388
95 % 3 78 494
90 % 3 78 519
70 % 3 90 491
50 % 3 191 302
40 % 3 191 314
30 % 3 191 325
Entity #50 | Chains: M4,m4
60S ribosomal protein L14-A protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 276
95 % 2 113 342
90 % 2 113 364
70 % 2 115 398
50 % 2 115 453
40 % 2 115 473
30 % 2 115 496
Entity #51 | Chains: M5,m5
60S ribosomal protein L15-A protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 115 264
95 % 2 118 325
90 % 2 118 345
70 % 2 205 255
50 % 2 219 253
40 % 2 219 255
30 % 2 219 269
Entity #52 | Chains: M6,m6
60S ribosomal protein L16-A protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 303
95 % 2 105 390
90 % 2 112 369
70 % 2 114 402
50 % 2 207 270
40 % 2 208 275
30 % 2 208 291
Entity #53 | Chains: M7,m7
60S ribosomal protein L17-A protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 116 260
95 % 2 116 330
90 % 2 118 343
70 % 2 118 383
50 % 2 217 254
40 % 2 217 258
30 % 2 217 272
Entity #54 | Chains: M8,m8
60S ribosomal protein L18-A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 113 274
95 % 2 113 346
90 % 2 115 355
70 % 2 115 397
50 % 2 208 278
40 % 2 213 273
30 % 2 213 286
Entity #55 | Chains: M9,m9
60S ribosomal protein L19-A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 294
95 % 2 107 378
90 % 2 107 405
70 % 2 110 423
50 % 2 207 275
40 % 2 208 277
30 % 2 208 295
Entity #56 | Chains: N0,n0
60S ribosomal protein L20-A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 285
95 % 2 111 365
90 % 2 113 372
70 % 2 113 415
50 % 2 198 299
40 % 2 199 304
30 % 2 200 314
Entity #57 | Chains: N1,n1
60S ribosomal protein L21-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 293
95 % 2 107 377
90 % 2 109 391
70 % 2 109 425
50 % 2 197 301
40 % 2 203 301
30 % 2 210 287
Entity #58 | Chains: N2,n2
60S ribosomal protein L22-A protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 81 432
95 % 2 81 548
90 % 2 81 576
70 % 2 82 590
50 % 2 82 635
40 % 2 82 677
30 % 2 83 677
Entity #59 | Chains: N3,n3
60S ribosomal protein L23-A protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 262
95 % 2 114 335
90 % 2 116 349
70 % 2 219 240
50 % 2 225 248
40 % 2 225 249
30 % 5 232 247
Entity #6 | Chains: S4,s4
40S ribosomal protein S4-A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 97 334
95 % 2 97 429
90 % 2 109 396
70 % 2 218 239
50 % 2 228 235
40 % 2 232 236
30 % 2 244 227
Entity #60 | Chains: N4,n4
60S ribosomal protein L24-A protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 68 503
95 % 2 70 639
90 % 2 70 667
70 % 2 71 685
50 % 2 71 718
40 % 2 128 468
30 % 2 128 489
Entity #61 | Chains: N5,n5
60S ribosomal protein L25 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 406
95 % 2 86 518
90 % 2 87 537
70 % 2 87 564
50 % 2 87 595
40 % 2 89 628
30 % 2 90 646
Entity #62 | Chains: N6,n6
60S ribosomal protein L26-A protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 118 253
95 % 2 118 321
90 % 2 120 332
70 % 2 120 373
50 % 2 215 257
40 % 2 215 263
30 % 2 215 277
Entity #63 | Chains: N7,n7
60S ribosomal protein L27-A protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 298
95 % 2 107 383
90 % 2 109 398
70 % 2 109 431
50 % 2 193 306
40 % 2 206 285
30 % 2 208 294
Entity #64 | Chains: N8,n8
60S ribosomal protein L28 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 105 304
95 % 2 108 368
90 % 2 110 382
70 % 2 110 420
50 % 2 210 265
40 % 2 211 270
30 % 2 216 274
Entity #65 | Chains: N9,n9
60S ribosomal protein L29 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 94 345
95 % 2 94 441
90 % 2 96 456
70 % 2 96 474
50 % 2 96 518
40 % 2 96 542
30 % 2 96 574
Entity #66 | Chains: O0,o0
60S ribosomal protein L30 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 113 267
95 % 3 113 337
90 % 3 115 351
70 % 3 115 386
50 % 3 156 363
40 % 3 156 379
30 % 3 156 391
Entity #67 | Chains: O1,o1
60S ribosomal protein L31-A protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 280
95 % 2 111 353
90 % 2 111 375
70 % 2 113 409
50 % 2 207 271
40 % 2 207 278
30 % 2 207 293
Entity #68 | Chains: O2,o2
60S ribosomal protein L32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 270
95 % 2 114 338
90 % 2 114 356
70 % 2 116 389
50 % 2 211 264
40 % 2 215 261
30 % 2 216 275
Entity #69 | Chains: O3,o3
60S ribosomal protein L33-A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 112 283
95 % 2 112 360
90 % 2 112 381
70 % 2 114 411
50 % 2 203 291
40 % 2 205 297
30 % 2 206 306
Entity #7 | Chains: S5,s5
40S ribosomal protein S5 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 323
95 % 2 100 409
90 % 2 112 367
70 % 2 112 414
50 % 2 239 219
40 % 2 239 225
30 % 2 239 233
Entity #70 | Chains: O4,o4
60S ribosomal protein L34-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 299
95 % 2 107 384
90 % 2 107 409
70 % 2 109 433
50 % 2 192 307
40 % 2 192 318
30 % 2 192 336
Entity #71 | Chains: O5,o5
60S ribosomal protein L35-A protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 117 258
95 % 2 117 324
90 % 2 117 344
70 % 2 119 378
50 % 2 210 272
40 % 2 221 252
30 % 2 223 259
Entity #72 | Chains: O6,o6
60S ribosomal protein L36-A protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 108 295
95 % 2 112 358
90 % 2 112 373
70 % 2 114 407
50 % 2 114 461
40 % 2 200 302
30 % 2 210 290
Entity #73 | Chains: O7,o7
60S ribosomal protein L37-A protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 114 263
95 % 2 114 336
90 % 2 114 357
70 % 2 170 296
50 % 2 215 256
40 % 2 215 262
30 % 2 215 276
Entity #74 | Chains: O8,o8
60S ribosomal protein L38 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 107 297
95 % 2 107 381
90 % 2 107 408
70 % 2 109 428
50 % 2 109 470
40 % 2 116 463
30 % 2 116 481
Entity #75 | Chains: O9,o9
60S ribosomal protein L39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 111 282
95 % 2 111 356
90 % 2 111 377
70 % 2 198 265
50 % 2 216 255
40 % 2 216 259
30 % 2 217 273
Entity #76 | Chains: Q0,q0
Ubiquitin-60S ribosomal protein L40 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 50 582
95 % 1 51 757
90 % 1 51 793
70 % 1 97 484
50 % 1 97 524
40 % 1 97 560
30 % 1 97 590
Entity #77 | Chains: Q1,q1
60S ribosomal protein L41-A protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 86 371
95 % 2 86 470
90 % 2 86 491
70 % 2 183 277
50 % 2 183 314
40 % 2 183 324
30 % 2 183 343
Entity #78 | Chains: Q2,q2
60S ribosomal protein L42-A protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 99 319
95 % 2 99 417
90 % 2 101 431
70 % 2 194 269
50 % 2 201 288
40 % 2 202 296
30 % 2 202 309
Entity #79 | Chains: Q3,q3
60S ribosomal protein L43-A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 103 306
95 % 2 103 399
90 % 2 103 421
70 % 2 105 441
50 % 2 205 277
40 % 2 206 282
30 % 23 229 253
Entity #8 | Chains: S6,s6
40S ribosomal protein S6-A protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 342
95 % 2 97 436
90 % 2 97 454
70 % 2 109 435
50 % 2 219 252
40 % 2 224 250
30 % 2 224 258
Entity #80 | Chains: e0
40S ribosomal protein S30-A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 99 383
95 % 3 99 493
90 % 3 111 466
70 % 3 111 487
50 % 3 191 337
40 % 3 191 351
30 % 3 191 368
Entity #81 | Chains: m2
Unknown protein m2 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #82 | Chains: p0
60S acidic ribosomal protein P0 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55421
95 % 1 44 1555
90 % 2 48 1453
70 % 2 49 1455
50 % 2 74 979
40 % 2 74 1002
30 % 2 74 1049
Entity #83 | Chains: p1
Unknown protein p1 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #84 | Chains: p2
Unknown protein p2 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: S7,s7
40S ribosomal protein S7-A protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 96 340
95 % 2 96 437
90 % 2 108 406
70 % 2 108 436
50 % 2 226 243
40 % 2 226 245
30 % 2 229 246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 28 Z 50S ribosomal protein L37Ae 2238
2 1VQO 28 Z 50S ribosomal protein L37Ae 2238
3 1VQ8 28 Z 50S ribosomal protein L37Ae 2238
4 1YHQ 28 Z 50S ribosomal protein L37Ae 2238
5 1VQP 28 Z 50S ribosomal protein L37Ae 2238
6 1VQM 28 Z 50S ribosomal protein L37Ae 2238
7 1VQL 28 Z 50S ribosomal protein L37Ae 2238
8 1VQK 28 Z 50S ribosomal protein L37Ae 2238
9 1VQN 29 Z 50S ribosomal protein L37Ae 2238
10 1YIJ 28 Z 50S ribosomal protein L37Ae 2238
11 1YI2 28 Z 50S ribosomal protein L37Ae 2238
12 1VQ9 28 Z 50S ribosomal protein L37Ae 2238
13 1VQ7 28 Z 50S ribosomal protein L37Ae 2238
14 1VQ5 28 Z 50S ribosomal protein L37Ae 2238
15 1YIT 32 Z 50S RIBOSOMAL PROTEIN L37AE 2238
16 3CPW 27 Y 50S ribosomal protein L37Ae 2238
17 1VQ6 29 Z 50S ribosomal protein L37Ae 2238
18 1YJW 32 Z 50S RIBOSOMAL PROTEIN L37AE 2238
19 1YJ9 28 Z 50S ribosomal protein L37Ae 2238
20 1VQ4 28 Z 50S ribosomal protein L37Ae 2238
21 1YJN 28 Z 50S ribosomal protein L37Ae 2238
22 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
23 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
24 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
25 5TBW 44 AQ, DR 60S ribosomal protein L43-A 4932
26 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
27 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
28 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
29 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
30 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
31 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
34 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
35 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
36 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
37 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
38 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
39 6HHQ 44 AQ, DR 60S ribosomal protein L43-A 4932
40 5OBM 44 Q3, q3 60S ribosomal protein L43-A 4932
41 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
42 5ON6 45 AQ, DR 60S ribosomal protein L43-A 4932
43 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
44 5NDV 44 Q3, q3 60S ribosomal protein L43-A 4932
45 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
46 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
47 2QA4 28 Z 50S ribosomal protein L37Ae 2238
48 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
49 5MEI 45 AQ, DR 60S ribosomal protein L43-A 4932
50 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
51 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
52 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
53 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
54 5NDW 67 Q3, q3 60S ribosomal protein L43-A 4932
55 4V8P 46 BY, CY, EY, GY RPL37A 5911
56 5NDG 79 Q3, q3 60S ribosomal protein L43-A 4932
57 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
58 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
59 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
60 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
61 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
62 6ZMO 44 Lp 60S ribosomal protein L37a 9606
63 6ZME 44 Lp 60S ribosomal protein L37a 9606
64 6ZMI 44 Lp 60S ribosomal protein L37a 9606
65 6ZM7 44 Lp 60S ribosomal protein L37a 9606
66 6XIQ 48 p 60S ribosomal protein L43-A 4932
67 6XIR 45 p 60S ribosomal protein L43-A 4932
68 6Z6J 79 Lp 60S ribosomal protein L43-A 4932
69 6Z6K 79 Lp 60S ribosomal protein L43-A 4932
70 6Z6L 44 Lp 60S ribosomal protein L37a 9606
71 6Z6M 44 Lp 60S ribosomal protein L37a 9606
72 6Z6N 44 Lp 60S ribosomal protein L37a 9606
73 6WOO 44 p eL43 4932
74 6YLG 47 p 60S ribosomal protein L43-A 4932
75 6YLH 47 p 60S ribosomal protein L43-A 4932
76 6YLY 23 p 60S ribosomal protein L43-A 4932
77 6W6L 42 q 60S ribosomal protein L37a 9606
78 6M62 48 p 60S ribosomal protein L43-A 4932
79 6Y6X 44 Lp 60S ribosomal protein L37a 9606
80 6Y57 47 Lp 60S ribosomal protein L37a 9606
81 6Y2L 47 Lp 60S ribosomal protein L37a 9606
82 6Y0G 47 Lp 60S ribosomal protein L37a 9606
83 6LU8 31 X 60S ribosomal protein L37a 9606
84 6LSR 29 X 60S ribosomal protein L37a 9606
85 6LSS 29 X 60S ribosomal protein L37a 9606
86 6LQM 30 X 60S ribosomal protein L37a 9606
87 6TNU 81 AT 60S ribosomal protein L43-A 4932
88 6UZ7 44 Bp KLLA0E05941p 28985
89 6TB3 81 AT 60S ribosomal protein L43-A 4932
90 6T83 77 aa, pb 60S ribosomal protein L43-A 4932
91 6T7T 77 Lp 60S ribosomal protein L43-A 4932
92 6T7I 77 Lp 60S ribosomal protein L43-A 4932
93 6T59 41 p3 eL43 9986
94 6T4Q 76 Lp 60S ribosomal protein L43-A 4932
95 6SV4 78 AT, XT, zT 60S ribosomal protein L43-A 4932
96 6SNT 77 aa 60S ribosomal protein L43-A 4932
97 6SGC 76 p2 eL43 9986
98 6S47 44 Ar 60S ribosomal protein L43-A 4932
99 6RZZ 38 m 60S ribosomal protein L43-A 4932
100 6S05 38 m 60S ribosomal protein L43-A 4932
101 6P5I 79 Ap eL43 9986
102 6P5J 79 Ap eL43 9986
103 6P5K 44 Ap eL43 9986
104 6P5N 44 Ap eL43 9986
105 6RM3 55 LPP eL43 6039
106 6RI5 38 m 60S ribosomal protein L43-A 4932
107 6OM7 77 q 60S ribosomal protein L37a 9606
108 6OLZ 46 Ap 60S ribosomal protein L37a 9606
109 6OM0 77 q 60S ribosomal protein L37a 9606
110 6OLE 77 q 60S ribosomal protein L37a 9606
111 6OLF 76 q 60S ribosomal protein L37a 9606
112 6OLG 47 Ap 60S ribosomal protein L37a 9606
113 6OLI 77 q 60S ribosomal protein L37a 9606
114 6R84 38 D 60S ribosomal protein L43-A 4932
115 6R86 36 D 60S ribosomal protein L43-A 4932
116 6R87 37 D 60S ribosomal protein L43-A 4932
117 6R7Q 71 p ribosomal protein eL43 9986
118 6R6G 75 p ribosomal protein eL43 9986
119 6R6P 44 p ribosomal protein eL43 9986
120 6R5Q 47 p ribosomal protein eL43 9986
121 6QZP 44 Lp 60S ribosomal protein L37a 9606
122 6QTZ 38 m 60S ribosomal protein L43-A 4932
123 6QT0 39 m 60S ribosomal protein L43-A 4932
124 6QIK 38 m 60S ribosomal protein L43-A 4932
125 6Q8Y 21 AT 60S ribosomal protein L43-A 4932
126 6N8J 26 p 60S ribosomal protein L43-A 4932
127 6N8K 25 p 60S ribosomal protein L43-A 4932
128 6N8L 25 p 60S ribosomal protein L43-A 4932
129 6N8M 17 R 60S ribosomal protein L43-A 4932
130 6N8N 20 R 60S ribosomal protein L43-A 4932
131 6N8O 22 R 60S ribosomal protein L43-A 4932
132 6I7O 78 AT, XT 60S ribosomal protein L43-A 4932
133 6IP5 44 2j 60S ribosomal protein L37a 9606
134 6IP6 44 2j 60S ribosomal protein L37a 9606
135 6IP8 44 2j 60S ribosomal protein L37a 9606
136 6MTB 47 p 60S ribosomal protein L37a 9986
137 6MTC 45 p 60S ribosomal protein L37a 9986
138 6MTD 44 p eL43 9986
139 6MTE 44 p eL43 9986
140 6HD7 7 D 60S ribosomal protein L43-A 4932
141 6HCQ 77 p3 eL43 9986
142 6HCJ 77 p3 eL43 9986
143 6HCM 76 p3 eL43 9986
144 6HCF 76 p3 eL43 9986
145 6GZ3 81 Ap ribosomal protein eL43 9986
146 6GZ4 81 Ap ribosomal protein eL43 9986
147 6GZ5 81 Ap ribosomal protein eL43 9986
148 6GQV 46 p 60S ribosomal protein L43-A 4932
149 6GQ1 46 p 60S ribosomal protein L43-A 4932
150 6GQB 46 p 60S ribosomal protein L43-A 4932
151 6D9J 41 p eL43 9986
152 6D90 41 p eL43 9986
153 6FTG 41 p Ribosomal protein L37a 9986
154 6FTI 41 p Ribosomal protein L37a 9986
155 6FTJ 41 p Ribosomal protein L37a 9986
156 6FT6 41 p 60S ribosomal protein L43-A 4932
157 6FRK 49 p Ribosomal protein eL43 9986
158 6EK0 44 Lp 60S ribosomal protein L37a 9606
159 6AZ3 41 o ribosomal protein eL43 5661
160 5XY3 43 p Uncharacterized protein 5722
161 5XXB 43 o Ribosomal protein eL43 5811
162 5UMD 44 h 60S ribosomal protein L37a 5833
163 5MC6 60 AT 60S ribosomal protein L43-A 4932
164 5H4P 41 p 60S ribosomal protein L43-A 4932
165 5M1J 65 p5 60S ribosomal protein L43-B 4932
166 5LZS 41 p eL43 9986
167 5LZT 41 p eL43 9986
168 5LZU 41 p eL43 9986
169 5LZV 41 p eL43 9986
170 5LZW 41 p eL43 9986
171 5LZX 41 p eL43 9986
172 5LZY 41 p eL43 9986
173 5LZZ 41 p eL43 9986
174 5T62 44 R 60S ribosomal protein L43-A 4932
175 5T6R 43 R 60S ribosomal protein L43-A 4932
176 5T5H 38 o 60S ribosomal protein L37a 5693
177 5T2A 39 m eL43 5661
178 5T2C 28 j 60S ribosomal protein L37a 9606
179 5LKS 44 Lp 60S ribosomal protein L37a 9606
180 5JUO 47 UA eL43 (yeast L43) 4932
181 5JUP 47 UA eL43 (yeast L43) 4932
182 5JUS 47 UA eL43 (yeast L43) 4932
183 5JUT 47 UA eL43 (yeast L43) 4932
184 5JUU 47 UA eL43 (yeast L43) 4932
185 5JCS 28 p 60S ribosomal protein L43-A 4932
186 5IT7 44 pp KLLA0E05941p 28985
187 3JCT 42 p 60S ribosomal protein L43-A 4932
188 3JCS 47 m ribosomal protein L43e 5661
189 5GAK 13 D 60S ribosomal protein L43-A 4932
190 5FL8 40 p 60S ribosomal protein L43-A 4932
191 5APN 43 p 60S ribosomal protein L43-A 4932
192 5APO 43 p 60S ribosomal protein L43-A 4932
193 3JBN 52 Ah 60S ribosomal protein eL43 5833
194 3JBO 55 Ah 60S ribosomal protein eL43 5833
195 3JBP 52 Ah 60S ribosomal protein eL43 5833
196 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
197 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
198 3JAG 41 p eL43 9986
199 3JAH 41 p eL43 9986
200 3JAI 41 p eL43 9986
201 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
202 5AJ0 44 Ap 60S ribosomal protein L37a 9606
203 3J92 40 p eL43 9986
204 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
205 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
206 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
207 3J7O 44 p Ribosomal protein eL43 9823
208 3J7P 45 p Ribosomal protein eL43 9823
209 3J7Q 44 p Ribosomal protein eL43 9823
210 3J7R 44 p Ribosomal protein eL43 9823
211 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
212 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
213 3J79 44 h 60S ribosomal protein eL43 5833
214 3J77 43 93 60S ribosomal protein L43 4932
215 3J78 43 93 60S ribosomal protein L43 4932
216 3J6X 45 83 60S ribosomal protein L43 4932
217 3J6Y 45 83 60S ribosomal protein L43 4932
218 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
219 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
220 4V7F 40 k 60S ribosomal protein L43 4932
221 4V7E 74 Cp 60S ribosomal protein L43E 4565
222 4V6W 77 Cp 60S ribosomal protein L37a 7227
223 4V6X 77 Cp 60S ribosomal protein L37a 9606
224 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
225 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
226 4ADX 36 Z RPL37AE 145262
227 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
228 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
229 4V4B 47 B9 60S ribosomal protein L43 4932