4V4I

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.


Sequence Similarity Clusters for the Entities in PDB 4V4I

Entity #1 | Chains: w
23S LARGE SUBUNIT RIBOSOMAL RNA rna, length: 2889 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L13 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 18642
95 % 3 3 17754
90 % 3 3 17440
70 % 3 3 16262
50 % 3 3 14683
40 % 3 3 13626
30 % 3 3 12412
Entity #11 | Chains: I
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 25 1308
95 % 181 201 92
90 % 181 201 98
70 % 202 225 100
50 % 255 488 37
40 % 255 488 48
30 % 255 488 50
Entity #12 | Chains: J
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 201 70
95 % 181 201 90
90 % 181 201 96
70 % 181 201 114
50 % 188 244 118
40 % 254 470 64
30 % 254 470 65
Entity #13 | Chains: K
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 17 1725
95 % 181 202 86
90 % 181 202 93
70 % 205 229 99
50 % 257 473 48
40 % 257 473 60
30 % 257 473 62
Entity #14 | Chains: L
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 206 57
95 % 182 206 80
90 % 182 206 86
70 % 182 206 105
50 % 248 432 57
40 % 255 472 53
30 % 255 474 54
Entity #15 | Chains: M
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 186 84
95 % 169 186 115
90 % 169 186 122
70 % 169 186 133
50 % 242 455 55
40 % 242 436 75
30 % 242 436 81
Entity #16 | Chains: N
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 17 1724
95 % 181 199 100
90 % 181 199 107
70 % 175 191 130
50 % 175 191 147
40 % 175 191 163
30 % 175 191 168
Entity #17 | Chains: O
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 196 76
95 % 181 201 99
90 % 181 201 105
70 % 181 201 120
50 % 255 475 43
40 % 255 483 50
30 % 255 483 51
Entity #18 | Chains: P
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 201 67
95 % 181 201 94
90 % 181 201 100
70 % 181 201 116
50 % 209 262 111
40 % 254 470 63
30 % 254 470 64
Entity #19 | Chains: Q
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 183 209 60
95 % 184 210 81
90 % 184 210 87
70 % 184 210 106
50 % 236 444 56
40 % 236 444 73
30 % 236 444 77
Entity #2 | Chains: x
5S LARGE SUBUNIT RIBOSOMAL RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 202 63
95 % 181 202 87
90 % 181 202 91
70 % 181 202 110
50 % 204 228 125
40 % 256 472 61
30 % 256 472 63
Entity #21 | Chains: S
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 201 71
95 % 181 201 91
90 % 181 201 97
70 % 181 201 115
50 % 233 448 54
40 % 233 448 71
30 % 233 450 75
Entity #22 | Chains: T
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 201 73
95 % 183 202 85
90 % 183 202 92
70 % 183 202 111
50 % 183 202 138
40 % 183 202 156
30 % 190 215 157
Entity #23 | Chains: U
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 2935
95 % 182 202 84
90 % 182 202 90
70 % 182 202 108
50 % 257 472 46
40 % 257 472 58
30 % 257 472 60
Entity #24 | Chains: V
50S ribosomal protein L28 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 21 1284
95 % 178 193 109
90 % 178 193 114
70 % 178 193 126
50 % 178 193 143
40 % 178 193 161
30 % 178 193 166
Entity #25 | Chains: W
50S ribosomal protein L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 186 80
95 % 176 194 111
90 % 176 194 118
70 % 176 194 128
50 % 176 194 146
40 % 221 400 86
30 % 244 426 82
Entity #26 | Chains: X
50S ribosomal protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 208 59
95 % 182 208 82
90 % 182 208 88
70 % 182 208 107
50 % 182 208 136
40 % 255 465 67
30 % 255 465 69
Entity #27 | Chains: Y
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3184
95 % 176 196 110
90 % 176 196 117
70 % 176 196 127
50 % 203 230 126
40 % 203 230 145
30 % 255 458 71
Entity #28 | Chains: Z
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 201 66
95 % 181 201 89
90 % 181 201 95
70 % 181 201 113
50 % 254 469 50
40 % 254 469 66
30 % 254 469 67
Entity #29 | Chains: a
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 202 69
95 % 182 202 95
90 % 182 202 101
70 % 182 202 118
50 % 203 230 123
40 % 203 240 140
30 % 203 240 147
Entity #3 | Chains: A
50S ribosomal protein L1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 34 1082
95 % 82 101 315
90 % 82 101 333
70 % 82 101 374
50 % 85 164 313
40 % 85 164 330
30 % 85 164 349
Entity #30 | Chains: b
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 149 113
95 % 128 149 147
90 % 128 149 156
70 % 147 212 135
50 % 191 408 78
40 % 191 408 94
30 % 191 408 93
Entity #31 | Chains: y
16S SMALL SUBUNIT RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: z
P-site PHE-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: 0
E-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #34 | Chains: 1
MRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: c
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 334 33
95 % 293 336 48
90 % 293 336 54
70 % 293 336 67
50 % 338 541 31
40 % 338 547 37
30 % 338 547 39
Entity #36 | Chains: d
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 279 49
95 % 251 279 74
90 % 251 279 79
70 % 251 279 89
50 % 272 366 87
40 % 272 366 102
30 % 272 366 103
Entity #37 | Chains: e
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 291 328 39
95 % 294 336 49
90 % 294 336 55
70 % 294 336 68
50 % 294 360 89
40 % 339 555 32
30 % 339 555 35
Entity #38 | Chains: f
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 335 32
95 % 294 335 53
90 % 294 335 58
70 % 294 335 71
50 % 340 545 29
40 % 340 545 38
30 % 340 545 41
Entity #39 | Chains: g
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 296 340 26
95 % 304 348 40
90 % 304 348 44
70 % 304 348 57
50 % 304 348 91
40 % 304 348 106
30 % 304 348 107
Entity #4 | Chains: B
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 202 72
95 % 182 202 98
90 % 182 202 104
70 % 203 226 101
50 % 255 475 47
40 % 255 475 59
30 % 255 475 61
Entity #40 | Chains: h
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 295 339 27
95 % 295 340 47
90 % 295 340 53
70 % 295 338 65
50 % 325 479 52
40 % 325 485 68
30 % 325 485 70
Entity #41 | Chains: i
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 291 335 31
95 % 291 335 51
90 % 295 339 52
70 % 295 339 62
50 % 296 364 86
40 % 342 560 30
30 % 384 766 21
Entity #42 | Chains: j
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 101 279
95 % 293 335 52
90 % 293 335 57
70 % 293 335 70
50 % 338 538 32
40 % 338 538 40
30 % 338 538 44
Entity #43 | Chains: k
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 333 36
95 % 293 334 58
90 % 293 334 63
70 % 293 334 75
50 % 340 549 27
40 % 340 549 35
30 % 340 587 32
Entity #44 | Chains: l
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 335 34
95 % 293 335 55
90 % 293 335 60
70 % 293 335 73
50 % 338 543 30
40 % 338 543 39
30 % 338 543 42
Entity #45 | Chains: m
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 200 244 61
95 % 293 342 45
90 % 293 342 50
70 % 339 547 17
50 % 339 565 23
40 % 339 565 29
30 % 339 565 33
Entity #46 | Chains: n
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 336 30
95 % 293 336 50
90 % 293 336 56
70 % 293 336 69
50 % 341 549 28
40 % 341 552 36
30 % 341 552 38
Entity #47 | Chains: o
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 334 35
95 % 293 334 56
90 % 293 334 61
70 % 293 355 55
50 % 293 355 90
40 % 293 355 104
30 % 293 355 105
Entity #48 | Chains: p
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 338 28
95 % 298 343 43
90 % 298 343 48
70 % 298 343 59
50 % 346 561 24
40 % 346 561 31
30 % 346 561 34
Entity #49 | Chains: q
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 330 37
95 % 293 335 54
90 % 293 335 59
70 % 293 335 72
50 % 293 335 95
40 % 293 335 111
30 % 293 335 114
Entity #5 | Chains: C
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 201 65
95 % 181 201 88
90 % 181 201 94
70 % 181 201 112
50 % 264 481 45
40 % 264 485 54
30 % 264 486 56
Entity #50 | Chains: r
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 101 334
95 % 287 328 59
90 % 291 332 64
70 % 291 332 76
50 % 291 332 97
40 % 291 332 113
30 % 291 332 117
Entity #51 | Chains: s
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 209 225 62
95 % 252 279 75
90 % 252 279 80
70 % 252 279 90
50 % 252 279 112
40 % 252 279 130
30 % 252 279 141
Entity #52 | Chains: t
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 260 293 44
95 % 260 293 65
90 % 260 293 71
70 % 295 338 64
50 % 340 550 26
40 % 340 550 34
30 % 340 550 37
Entity #53 | Chains: u
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 56 593
95 % 293 334 57
90 % 293 334 62
70 % 293 334 74
50 % 293 334 96
40 % 293 334 112
30 % 293 334 115
Entity #54 | Chains: v
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 259 292 46
95 % 259 292 67
90 % 259 292 74
70 % 259 292 85
50 % 259 292 109
40 % 259 292 128
30 % 259 292 138
Entity #6 | Chains: D
50S ribosomal protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 16 1905
95 % 182 202 97
90 % 182 202 102
70 % 182 202 119
50 % 208 231 122
40 % 208 241 139
30 % 261 467 68
Entity #7 | Chains: E
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 17 1719
95 % 184 204 83
90 % 184 204 89
70 % 205 228 97
50 % 261 469 49
40 % 261 469 65
30 % 261 469 66
Entity #8 | Chains: F
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 201 68
95 % 181 201 96
90 % 181 201 99
70 % 181 201 117
50 % 200 233 120
40 % 200 223 146
30 % 253 479 55
Entity #9 | Chains: G
50S ribosomal protein L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 18 1662
95 % 157 166 129
90 % 157 166 134
70 % 157 166 146
50 % 162 171 168
40 % 204 359 99
30 % 204 372 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

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