4V4I

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.


Sequence Similarity Clusters for the Entities in PDB 4V4I

Entity #1 | Chains: w
23S LARGE SUBUNIT RIBOSOMAL RNA rna, length: 2889 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L13 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 20831
95 % 3 3 18868
90 % 3 3 18511
70 % 3 3 17179
50 % 3 3 15481
40 % 3 3 14366
30 % 3 3 13075
Entity #11 | Chains: I
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 25 1341
95 % 185 205 98
90 % 185 205 106
70 % 206 229 102
50 % 260 529 34
40 % 260 529 42
30 % 260 529 46
Entity #12 | Chains: J
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 205 68
95 % 185 205 94
90 % 185 205 100
70 % 185 205 116
50 % 192 252 118
40 % 259 521 46
30 % 259 521 51
Entity #13 | Chains: K
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 17 1792
95 % 185 206 91
90 % 185 206 96
70 % 209 233 100
50 % 262 512 41
40 % 262 512 51
30 % 262 512 57
Entity #14 | Chains: L
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 210 57
95 % 186 210 81
90 % 186 210 87
70 % 186 210 106
50 % 253 469 56
40 % 260 513 47
30 % 260 515 50
Entity #15 | Chains: M
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 190 84
95 % 173 190 117
90 % 173 190 124
70 % 173 190 136
50 % 247 496 52
40 % 247 477 72
30 % 247 477 76
Entity #16 | Chains: N
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 17 1831
95 % 185 203 105
90 % 185 203 111
70 % 179 195 133
50 % 179 195 152
40 % 179 195 166
30 % 179 195 172
Entity #17 | Chains: O
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 200 75
95 % 185 205 99
90 % 185 205 107
70 % 185 205 121
50 % 260 516 39
40 % 260 524 44
30 % 260 524 48
Entity #18 | Chains: P
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 205 66
95 % 185 205 96
90 % 185 205 104
70 % 185 205 120
50 % 213 270 112
40 % 259 511 52
30 % 259 511 58
Entity #19 | Chains: Q
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 213 61
95 % 188 214 83
90 % 188 214 89
70 % 188 214 108
50 % 241 485 54
40 % 241 485 70
30 % 241 485 73
Entity #2 | Chains: x
5S LARGE SUBUNIT RIBOSOMAL RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 63
95 % 185 206 89
90 % 185 206 95
70 % 185 206 114
50 % 208 232 124
40 % 261 513 50
30 % 261 513 56
Entity #21 | Chains: S
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 205 70
95 % 185 205 92
90 % 185 205 99
70 % 185 205 115
50 % 238 489 49
40 % 238 489 68
30 % 238 491 70
Entity #22 | Chains: T
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 205 73
95 % 187 206 90
90 % 187 206 97
70 % 187 206 113
50 % 187 206 141
40 % 187 206 158
30 % 194 219 161
Entity #23 | Chains: U
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 3043
95 % 186 206 88
90 % 186 206 94
70 % 186 206 112
50 % 262 513 40
40 % 262 513 48
30 % 262 513 55
Entity #24 | Chains: V
50S ribosomal protein L28 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 21 1366
95 % 182 197 109
90 % 182 197 115
70 % 182 197 127
50 % 182 197 145
40 % 182 197 162
30 % 182 197 168
Entity #25 | Chains: W
50S ribosomal protein L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 190 78
95 % 180 198 112
90 % 180 198 120
70 % 180 198 129
50 % 180 198 149
40 % 226 437 79
30 % 249 463 78
Entity #26 | Chains: X
50S ribosomal protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 212 60
95 % 186 212 85
90 % 186 212 90
70 % 186 212 110
50 % 186 212 139
40 % 260 506 56
30 % 260 506 62
Entity #27 | Chains: Y
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3454
95 % 180 200 110
90 % 180 200 117
70 % 180 200 128
50 % 207 234 125
40 % 207 234 146
30 % 260 499 65
Entity #28 | Chains: Z
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 205 69
95 % 185 205 103
90 % 185 205 109
70 % 185 205 123
50 % 259 510 42
40 % 259 510 53
30 % 259 510 59
Entity #29 | Chains: a
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 206 67
95 % 186 206 97
90 % 186 206 105
70 % 186 206 122
50 % 207 234 123
40 % 207 244 136
30 % 207 234 154
Entity #3 | Chains: A
50S ribosomal protein L1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 34 1134
95 % 82 101 326
90 % 82 101 341
70 % 82 101 390
50 % 85 190 261
40 % 85 190 275
30 % 85 190 289
Entity #30 | Chains: b
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 153 116
95 % 132 153 154
90 % 132 153 163
70 % 151 220 138
50 % 196 449 72
40 % 196 449 90
30 % 196 449 92
Entity #31 | Chains: y
16S SMALL SUBUNIT RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: z
P-site PHE-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: 0
E-TRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #34 | Chains: 1
MRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: c
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 296 338 34
95 % 297 340 48
90 % 297 340 56
70 % 297 340 66
50 % 343 575 29
40 % 343 581 34
30 % 343 581 39
Entity #36 | Chains: d
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 283 49
95 % 255 283 74
90 % 255 283 81
70 % 255 283 93
50 % 276 373 87
40 % 276 373 104
30 % 276 373 104
Entity #37 | Chains: e
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 295 332 38
95 % 298 340 47
90 % 298 340 54
70 % 298 340 65
50 % 344 559 32
40 % 344 589 30
30 % 344 589 35
Entity #38 | Chains: f
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 298 339 31
95 % 298 339 51
90 % 298 339 58
70 % 298 339 68
50 % 345 579 27
40 % 345 579 35
30 % 345 579 40
Entity #39 | Chains: g
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 300 344 24
95 % 308 352 41
90 % 308 352 46
70 % 308 352 57
50 % 308 352 93
40 % 308 352 109
30 % 308 352 111
Entity #4 | Chains: B
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 206 72
95 % 186 206 101
90 % 186 206 103
70 % 207 230 101
50 % 260 526 37
40 % 260 526 45
30 % 260 527 49
Entity #40 | Chains: h
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 299 343 26
95 % 299 344 45
90 % 299 344 51
70 % 299 342 64
50 % 330 510 51
40 % 330 516 64
30 % 330 516 67
Entity #41 | Chains: i
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 295 339 30
95 % 295 339 50
90 % 299 343 50
70 % 299 343 61
50 % 300 368 89
40 % 347 594 28
30 % 389 809 22
Entity #42 | Chains: j
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 101 306
95 % 297 339 52
90 % 297 339 59
70 % 297 339 70
50 % 343 572 30
40 % 343 572 37
30 % 343 572 42
Entity #43 | Chains: k
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 296 337 36
95 % 297 338 56
90 % 297 338 63
70 % 297 338 73
50 % 345 583 25
40 % 345 583 32
30 % 345 621 31
Entity #44 | Chains: l
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 339 32
95 % 297 339 53
90 % 297 339 60
70 % 297 339 71
50 % 343 577 28
40 % 343 577 36
30 % 343 577 41
Entity #45 | Chains: m
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 141 159
95 % 297 346 44
90 % 297 346 49
70 % 344 581 16
50 % 344 600 21
40 % 344 600 27
30 % 344 600 33
Entity #46 | Chains: n
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 340 29
95 % 297 340 49
90 % 297 340 57
70 % 297 340 67
50 % 346 583 26
40 % 346 586 33
30 % 346 586 38
Entity #47 | Chains: o
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 338 35
95 % 297 338 58
90 % 297 338 65
70 % 297 359 56
50 % 297 359 91
40 % 297 359 107
30 % 297 359 110
Entity #48 | Chains: p
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 342 27
95 % 302 347 42
90 % 302 347 47
70 % 302 347 59
50 % 351 595 23
40 % 351 595 29
30 % 351 595 34
Entity #49 | Chains: q
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 334 37
95 % 297 339 55
90 % 297 339 62
70 % 297 339 69
50 % 297 339 94
40 % 297 339 113
30 % 297 339 117
Entity #5 | Chains: C
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 205 71
95 % 185 205 95
90 % 185 205 101
70 % 185 205 117
50 % 269 532 36
40 % 269 536 41
30 % 269 537 45
Entity #50 | Chains: r
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 101 355
95 % 291 332 60
90 % 295 336 67
70 % 295 336 77
50 % 295 336 98
40 % 295 336 117
30 % 295 336 121
Entity #51 | Chains: s
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 229 62
95 % 256 283 73
90 % 256 283 80
70 % 256 283 92
50 % 256 283 115
40 % 256 283 132
30 % 256 283 144
Entity #52 | Chains: t
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 297 45
95 % 264 297 66
90 % 264 297 73
70 % 299 342 62
50 % 345 584 24
40 % 345 584 31
30 % 345 584 37
Entity #53 | Chains: u
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 56 624
95 % 297 338 57
90 % 297 338 64
70 % 297 338 74
50 % 297 338 96
40 % 297 338 115
30 % 297 338 119
Entity #54 | Chains: v
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 296 46
95 % 263 296 67
90 % 263 296 76
70 % 263 296 89
50 % 263 296 111
40 % 263 296 129
30 % 263 296 140
Entity #6 | Chains: D
50S ribosomal protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 16 1953
95 % 186 206 100
90 % 186 206 108
70 % 186 206 119
50 % 212 235 122
40 % 212 245 135
30 % 266 518 54
Entity #7 | Chains: E
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 17 1815
95 % 188 208 87
90 % 188 208 92
70 % 209 232 99
50 % 266 506 44
40 % 266 506 55
30 % 266 506 61
Entity #8 | Chains: F
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 205 65
95 % 185 205 93
90 % 185 205 102
70 % 185 205 118
50 % 212 276 106
40 % 258 513 49
30 % 258 517 52
Entity #9 | Chains: G
50S ribosomal protein L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 18 1746
95 % 161 170 127
90 % 161 170 134
70 % 161 170 148
50 % 166 175 173
40 % 208 393 99
30 % 208 406 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures