5BR8

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin


Sequence Similarity Clusters for the Entities in PDB 5BR8

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 333 36
95 % 148 334 57
90 % 148 334 62
70 % 148 334 74
50 % 176 550 26
40 % 176 550 35
30 % 176 588 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 335 33
95 % 148 335 54
90 % 148 335 59
70 % 148 335 70
50 % 175 544 29
40 % 175 544 39
30 % 175 544 43
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 55 792
95 % 148 342 46
90 % 148 342 51
70 % 176 548 17
50 % 176 567 22
40 % 176 567 29
30 % 176 567 33
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 336 31
95 % 148 336 52
90 % 148 336 57
70 % 148 336 69
50 % 178 550 27
40 % 178 553 36
30 % 178 553 39
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 334 35
95 % 148 334 59
90 % 148 334 64
70 % 148 341 61
50 % 148 355 89
40 % 148 355 106
30 % 148 355 107
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 338 29
95 % 152 343 44
90 % 152 343 49
70 % 152 343 58
50 % 182 562 23
40 % 182 562 31
30 % 182 562 35
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 330 37
95 % 148 335 53
90 % 148 335 58
70 % 148 335 71
50 % 148 335 94
40 % 148 335 112
30 % 148 335 115
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 101 342
95 % 147 328 60
90 % 148 332 65
70 % 148 332 76
50 % 148 332 96
40 % 148 332 114
30 % 148 332 118
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 225 63
95 % 127 279 75
90 % 127 279 81
70 % 127 279 94
50 % 127 279 114
40 % 127 279 133
30 % 127 279 143
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 293 46
95 % 132 293 66
90 % 132 293 72
70 % 149 338 63
50 % 176 551 25
40 % 176 551 34
30 % 176 551 38
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 334 32
95 % 148 336 50
90 % 148 336 55
70 % 148 336 67
50 % 175 542 30
40 % 175 548 37
30 % 175 548 41
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 136 278 49
95 % 148 334 58
90 % 148 334 63
70 % 148 334 75
50 % 148 334 95
40 % 148 334 113
30 % 148 334 116
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 292 48
95 % 134 292 69
90 % 134 292 78
70 % 134 292 87
50 % 134 292 108
40 % 134 292 129
30 % 134 292 138
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 126 279 50
95 % 126 279 76
90 % 126 279 82
70 % 126 279 95
50 % 130 366 86
40 % 130 366 103
30 % 130 366 103
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 328 38
95 % 148 336 49
90 % 148 336 56
70 % 148 336 66
50 % 148 360 88
40 % 175 556 33
30 % 175 556 37
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 335 34
95 % 148 335 55
90 % 148 335 60
70 % 148 335 72
50 % 176 546 28
40 % 176 546 38
30 % 176 546 42
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 340 27
95 % 158 348 41
90 % 158 348 46
70 % 158 348 56
50 % 158 348 90
40 % 158 348 107
30 % 158 348 108
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 149 339 28
95 % 149 340 48
90 % 149 340 54
70 % 149 338 65
50 % 177 480 51
40 % 177 486 69
30 % 177 486 70
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 335 30
95 % 148 335 51
90 % 149 339 53
70 % 149 339 62
50 % 150 364 85
40 % 178 561 30
30 % 178 561 34
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 234 65
95 % 148 335 56
90 % 148 335 61
70 % 148 335 73
50 % 175 539 31
40 % 175 539 40
30 % 175 539 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures