Sequence Similarity Clusters for the Entities in PDB 5I6X

Entity #1 | Chains: A
Sodium-dependent serotonin transporter protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 11009
95 % 1 14 5879 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 14 5912
70 % 1 14 5825
50 % 11 28 2611
40 % 11 28 2646
30 % 11 28 2630
Entity #2 | Chains: B
8B6 antibody, heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 12664
95 % 2 11 7592 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 3 12 6194
70 % 2406 2903 1
50 % 2519 3048 1
40 % 2519 3048 1
30 % 5040 6095 1
Entity #3 | Chains: C
8B6 antibody, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 7178
95 % 7 16 4136 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.4
PDBFlex
90 % 49 71 597
70 % 1993 2368 2
50 % 2488 3003 2
40 % 2488 3003 2
30 % 5041 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures