Sequence Similarity Clusters for the Entities in PDB 5I6X

Entity #1 | Chains: A
Sodium-dependent serotonin transporter protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 11840
95 % 1 14 6011 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 14 6038
70 % 1 14 5938
50 % 11 28 2662
40 % 11 28 2680
30 % 11 28 2662
Entity #2 | Chains: B
8B6 antibody, heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 13219
95 % 2 11 7914 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 3 12 6555
70 % 2484 3009 1
50 % 5174 6281 1
40 % 5174 6281 1
30 % 5210 6327 1
Entity #3 | Chains: C
8B6 antibody, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 7453
95 % 7 16 4234 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.1
PDBFlex
90 % 49 72 611
70 % 2047 2439 2
50 % 5175 6281 1
40 % 5175 6281 1
30 % 5211 6327 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures