Sequence Similarity Clusters for the Entities in PDB 5LMM

Entity #1 | Chains: S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 2019
95 % 4 17 1818 Flexibility: No
Max RMSD: 9.9, Avg RMSD: 0.5
PDBFlex
90 % 4 17 1834
70 % 4 26 1516
50 % 4 26 1562
40 % 4 26 1603
30 % 4 26 1635
Entity #2 | Chains: L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12548
95 % 4 19 1607 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 4 19 1641
70 % 4 19 1682
50 % 4 33 1122
40 % 9 89 397
30 % 9 89 410

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures