5VYC

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.


Sequence Similarity Clusters for the Entities in PDB 5VYC

Entity #1 | Chains: T1,T2,T3,T4,T5,T6
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 43 1064
95 % 1 85 680
90 % 1 85 709
70 % 1 85 733
50 % 39 174 301
40 % 39 174 313
30 % 41 178 321
Entity #10 | Chains: C1,C2,C3,C4,C5,C6
40S ribosomal protein S2 protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1731
95 % 1 40 1556
90 % 1 52 1217
70 % 1 53 1228
50 % 1 56 1213
40 % 1 56 1251
30 % 1 56 1287
Entity #11 | Chains: G1,G2,G3,G4,G5,G6
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 84 508
95 % 1 85 686
90 % 1 85 718
70 % 1 91 678
50 % 39 182 285
40 % 39 187 287
30 % 39 187 308
Entity #12 | Chains: J1,J2,J3,J4,J5,J6
40S ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 85 498
95 % 1 85 672
90 % 1 85 700
70 % 39 185 243
50 % 41 200 223
40 % 41 208 225
30 % 41 208 243
Entity #13 | Chains: M1,M2,M3,M4,M5,M6
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 64 695
95 % 1 77 763
90 % 1 77 797
70 % 1 82 772
50 % 1 83 793
40 % 1 83 822
30 % 1 83 862
Entity #14 | Chains: N1,N2,N3,N4,N5,N6
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 85 504
95 % 1 85 670
90 % 1 85 698
70 % 39 190 233
50 % 41 197 234
40 % 41 205 230
30 % 41 206 245
Entity #15 | Chains: O1,O2,O3,O4,O5,O6
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 73 594
95 % 1 73 807
90 % 1 81 752
70 % 41 198 197
50 % 41 199 227
40 % 41 199 239
30 % 41 199 255
Entity #16 | Chains: W1,W2,W3,W4,W5,W6
40S ribosomal protein S15a protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 86 488
95 % 1 86 661
90 % 1 86 689
70 % 40 201 200
50 % 43 213 207
40 % 43 214 219
30 % 43 214 234
Entity #17 | Chains: Y1,Y2,Y3,Y4,Y5,Y6
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 77 565
95 % 1 85 678
90 % 1 85 704
70 % 1 86 721
50 % 38 192 251
40 % 38 192 267
30 % 38 192 283
Entity #18 | Chains: Z1,Z2,Z3,Z4,Z5,Z6
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 57 791
95 % 1 57 1070
90 % 1 57 1115
70 % 1 58 1131
50 % 1 58 1182
40 % 1 59 1194
30 % 1 59 1234
Entity #19 | Chains: b1,b2,b3,b4,b5,b6
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 85 503
95 % 1 85 668
90 % 1 85 697
70 % 38 175 264
50 % 40 187 255
40 % 40 187 271
30 % 40 187 286
Entity #2 | Chains: U1,U2,U3,U4,U5,U6
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 54 864
95 % 1 56 1090
90 % 1 56 1128
70 % 1 57 1152
50 % 1 59 1136
40 % 1 59 1173
30 % 1 59 1212
Entity #20 | Chains: e1,e2,e3,e4,e5,e6
40S ribosomal protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 13857
95 % 1 31 1927
90 % 1 31 1985
70 % 1 31 2030
50 % 1 32 2045
40 % 1 32 2075
30 % 1 32 2104
Entity #21 | Chains: i1,i2,i3,i4,i5,i6
Human 18S ribosomal RNA rna, length: 1869 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: A1,A2,A3,A4,A5,A6
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1818
95 % 1 54 1142
90 % 1 54 1176
70 % 1 54 1206
50 % 1 54 1256
40 % 1 54 1294
30 % 1 54 1332
Entity #23 | Chains: B1,B2,B3,B4,B5,B6
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 51 908
95 % 1 58 1064
90 % 1 58 1100
70 % 1 58 1141
50 % 1 60 1131
40 % 40 161 333
30 % 40 161 354
Entity #24 | Chains: D1,D2,D3,D4,D5,D6
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 41 1114
95 % 1 73 797
90 % 1 73 827
70 % 1 74 855
50 % 40 168 316
40 % 40 168 327
30 % 40 168 347
Entity #25 | Chains: E1,E2,E3,E4,E5,E6
40S ribosomal protein S4, X isoform protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 54 859
95 % 1 73 806
90 % 1 85 695
70 % 38 181 255
50 % 40 191 245
40 % 40 191 258
30 % 40 199 258
Entity #26 | Chains: F1,F2,F3,F4,F5,F6
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 86 487
95 % 1 86 660
90 % 1 86 688
70 % 1 101 604
50 % 41 201 220
40 % 41 201 235
30 % 41 201 253
Entity #27 | Chains: H1,H2,H3,H4,H5,H6
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 84 513
95 % 1 85 673
90 % 1 85 705
70 % 1 86 725
50 % 38 188 262
40 % 38 188 278
30 % 40 191 277
Entity #28 | Chains: I1,I2,I3,I4,I5,I6
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 77 561
95 % 1 85 682
90 % 1 85 710
70 % 1 85 734
50 % 40 190 248
40 % 40 194 251
30 % 40 194 269
Entity #29 | Chains: K1,K2,K3,K4,K5,K6
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 51 912
95 % 1 53 1174
90 % 1 53 1211
70 % 1 53 1246
50 % 1 54 1250
40 % 1 55 1286
30 % 1 55 1323
Entity #3 | Chains: V1,V2,V3,V4,V5,V6
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 65 679
95 % 1 84 692
90 % 1 84 723
70 % 1 85 732
50 % 38 171 309
40 % 38 171 320
30 % 38 171 341
Entity #30 | Chains: L1,L2,L3,L4,L5,L6
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 86 492
95 % 1 86 666
90 % 1 86 685
70 % 1 87 714
50 % 41 197 233
40 % 41 197 245
30 % 41 197 261
Entity #31 | Chains: P1,P2,P3,P4,P5,P6
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 31 1560
95 % 1 84 688
90 % 1 84 720
70 % 1 86 717
50 % 40 179 288
40 % 40 186 282
30 % 40 187 301
Entity #32 | Chains: Q1,Q2,Q3,Q4,Q5,Q6
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 76 570
95 % 1 76 768
90 % 1 76 799
70 % 1 79 792
50 % 41 190 244
40 % 41 198 244
30 % 41 199 256
Entity #33 | Chains: R1,R2,R3,R4,R5,R6
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 55 840
95 % 1 85 669
90 % 1 85 696
70 % 1 86 718
50 % 40 176 293
40 % 40 176 303
30 % 40 176 328
Entity #34 | Chains: S1,S2,S3,S4,S5,S6
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 86 489
95 % 1 86 656
90 % 1 86 691
70 % 39 183 247
50 % 41 192 240
40 % 41 202 233
30 % 41 202 251
Entity #35 | Chains: j1,j2,j3,j4,j5,j6
60S ribosomal protein L41 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 78 550
95 % 1 81 714
90 % 1 81 747
70 % 38 162 283
50 % 38 162 331
40 % 38 162 345
30 % 38 162 365
Entity #36 | Chains: k1,k2,k3,k4,k5,k6
Malignant T-cell-amplified sequence 1 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12267
95 % 4 4 4098
90 % 4 4 4152
70 % 4 4 4143
50 % 4 4 4081
40 % 4 4 4027
30 % 4 4 3931
Entity #37 | Chains: l1,l2,l3,l4,l5,l6
Density-regulated protein protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 5421
95 % 3 3 6295
90 % 3 3 6090
70 % 3 3 5988
50 % 3 3 5770
40 % 3 3 5605
30 % 3 3 5350
Entity #4 | Chains: X1,X2,X3,X4,X5,X6
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 84 509
95 % 1 88 646
90 % 1 89 670
70 % 41 204 184
50 % 41 214 206
40 % 41 214 220
30 % 41 214 235
Entity #5 | Chains: a1,a2,a3,a4,a5,a6
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 35 1335
95 % 1 49 1271
90 % 1 49 1288
70 % 1 50 1313
50 % 3 85 731
40 % 3 85 759
30 % 3 85 801
Entity #6 | Chains: c1,c2,c3,c4,c5,c6
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 67 654
95 % 1 67 877
90 % 1 67 911
70 % 39 191 231
50 % 41 202 218
40 % 41 203 232
30 % 41 203 250
Entity #7 | Chains: d1,d2,d3,d4,d5,d6
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 79 545
95 % 1 83 700
90 % 1 83 730
70 % 39 169 275
50 % 39 177 294
40 % 39 177 304
30 % 39 177 329
Entity #8 | Chains: f1,f2,f3,f4,f5,f6
Ribosomal protein S27a protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 12132
95 % 1 50 1247
90 % 1 50 1282
70 % 4 82 708
50 % 6 86 716
40 % 6 89 714
30 % 6 89 748
Entity #9 | Chains: g1,g2,g3,g4,g5,g6
Receptor of activated protein C kinase 1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 85 483
95 % 2 85 652
90 % 2 85 680
70 % 3 87 694
50 % 46 176 273
40 % 48 182 261
30 % 48 183 278

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures