5VYC

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.


Sequence Similarity Clusters for the Entities in PDB 5VYC

Entity #1 | Chains: T1,T2,T3,T4,T5,T6
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 59 812
95 % 1 101 614
90 % 1 101 635
70 % 1 101 656
50 % 1 103 655
40 % 39 195 302
30 % 41 198 296
Entity #10 | Chains: C1,C2,C3,C4,C5,C6
40S ribosomal protein S2 protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 42 1184
95 % 1 55 1195
90 % 1 67 984
70 % 1 68 1008
50 % 1 71 993
40 % 1 71 1020
30 % 1 71 1066
Entity #11 | Chains: G1,G2,G3,G4,G5,G6
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 100 469
95 % 1 101 610
90 % 1 101 630
70 % 1 107 583
50 % 39 211 261
40 % 39 216 259
30 % 39 216 271
Entity #12 | Chains: J1,J2,J3,J4,J5,J6
40S ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 101 464
95 % 1 101 602
90 % 1 101 623
70 % 39 214 240
50 % 41 229 229
40 % 41 240 220
30 % 41 240 227
Entity #13 | Chains: M1,M2,M3,M4,M5,M6
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 79 597
95 % 1 93 655
90 % 1 93 685
70 % 1 98 679
50 % 1 99 700
40 % 1 99 726
30 % 1 99 765
Entity #14 | Chains: N1,N2,N3,N4,N5,N6
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 102 454
95 % 1 102 596
90 % 1 102 620
70 % 39 219 236
50 % 41 226 233
40 % 41 238 224
30 % 41 238 230
Entity #15 | Chains: O1,O2,O3,O4,O5,O6
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 90 522
95 % 1 90 676
90 % 1 98 655
70 % 41 227 225
50 % 41 228 230
40 % 41 228 232
30 % 41 228 244
Entity #16 | Chains: W1,W2,W3,W4,W5,W6
40S ribosomal protein S15a protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 102 451
95 % 1 102 590
90 % 1 102 614
70 % 40 229 227
50 % 42 231 228
40 % 43 243 215
30 % 395 881 22
Entity #17 | Chains: Y1,Y2,Y3,Y4,Y5,Y6
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 93 505
95 % 1 101 605
90 % 1 101 631
70 % 1 102 641
50 % 38 221 246
40 % 38 221 246
30 % 38 221 259
Entity #18 | Chains: Z1,Z2,Z3,Z4,Z5,Z6
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 71 677
95 % 1 71 899
90 % 1 71 937
70 % 1 72 946
50 % 1 72 981
40 % 1 73 994
30 % 1 73 1035
Entity #19 | Chains: b1,b2,b3,b4,b5,b6
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 102 458
95 % 1 102 591
90 % 1 102 616
70 % 38 209 243
50 % 40 215 248
40 % 40 215 248
30 % 40 215 262
Entity #2 | Chains: U1,U2,U3,U4,U5,U6
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 68 706
95 % 1 70 907
90 % 1 70 942
70 % 1 71 957
50 % 1 73 955
40 % 1 73 982
30 % 1 73 1025
Entity #20 | Chains: e1,e2,e3,e4,e5,e6
40S ribosomal protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 14470
95 % 1 31 2070
90 % 1 31 2186
70 % 1 31 2187
50 % 1 32 2146
40 % 1 32 2171
30 % 1 32 2205
Entity #21 | Chains: i1,i2,i3,i4,i5,i6
Human 18S ribosomal RNA rna, length: 1869 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: A1,A2,A3,A4,A5,A6
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 41 1212
95 % 1 69 922
90 % 1 69 961
70 % 1 69 988
50 % 1 69 1017
40 % 1 69 1045
30 % 1 69 1091
Entity #23 | Chains: B1,B2,B3,B4,B5,B6
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 67 719
95 % 1 74 866
90 % 1 74 898
70 % 1 74 918
50 % 1 76 928
40 % 40 188 311
30 % 40 188 321
Entity #24 | Chains: D1,D2,D3,D4,D5,D6
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 57 840
95 % 1 89 691
90 % 1 89 720
70 % 1 90 737
50 % 40 189 302
40 % 40 189 312
30 % 40 189 325
Entity #25 | Chains: E1,E2,E3,E4,E5,E6
40S ribosomal protein S4, X isoform protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 70 679
95 % 1 89 688
90 % 1 101 624
70 % 38 210 242
50 % 40 220 239
40 % 40 220 241
30 % 40 231 241
Entity #26 | Chains: F1,F2,F3,F4,F5,F6
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 102 450
95 % 1 102 588
90 % 1 102 612
70 % 1 117 536
50 % 41 230 227
40 % 41 230 231
30 % 41 230 242
Entity #27 | Chains: H1,H2,H3,H4,H5,H6
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 101 463
95 % 1 102 595
90 % 1 102 619
70 % 1 103 622
50 % 38 217 250
40 % 38 217 252
30 % 40 220 254
Entity #28 | Chains: I1,I2,I3,I4,I5,I6
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 93 510
95 % 1 101 612
90 % 1 101 639
70 % 1 101 659
50 % 40 219 244
40 % 40 223 239
30 % 40 223 253
Entity #29 | Chains: K1,K2,K3,K4,K5,K6
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 65 737
95 % 1 67 966
90 % 1 67 1004
70 % 1 67 1035
50 % 1 68 1026
40 % 1 69 1048
30 % 1 69 1095
Entity #3 | Chains: V1,V2,V3,V4,V5,V6
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 82 578
95 % 1 101 608
90 % 1 101 632
70 % 1 102 639
50 % 38 193 297
40 % 38 193 310
30 % 38 193 320
Entity #30 | Chains: L1,L2,L3,L4,L5,L6
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 102 460
95 % 1 102 594
90 % 1 102 615
70 % 1 103 621
50 % 41 226 232
40 % 41 226 235
30 % 41 226 246
Entity #31 | Chains: P1,P2,P3,P4,P5,P6
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 45 1082
95 % 1 100 616
90 % 1 100 643
70 % 1 102 642
50 % 40 200 283
40 % 40 211 267
30 % 40 211 280
Entity #32 | Chains: Q1,Q2,Q3,Q4,Q5,Q6
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 92 512
95 % 1 92 665
90 % 1 92 692
70 % 1 95 697
50 % 41 219 241
40 % 41 219 243
30 % 41 231 240
Entity #33 | Chains: R1,R2,R3,R4,R5,R6
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 74 646
95 % 1 104 555
90 % 1 104 578
70 % 1 105 599
50 % 40 200 280
40 % 40 200 287
30 % 40 200 300
Entity #34 | Chains: S1,S2,S3,S4,S5,S6
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 102 452
95 % 1 102 592
90 % 1 102 617
70 % 39 207 244
50 % 41 216 245
40 % 41 228 233
30 % 41 229 243
Entity #35 | Chains: j1,j2,j3,j4,j5,j6
60S ribosomal protein L41 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 93 509
95 % 1 96 642
90 % 1 96 669
70 % 38 181 280
50 % 38 181 318
40 % 38 181 329
30 % 38 181 347
Entity #36 | Chains: k1,k2,k3,k4,k5,k6
Malignant T-cell-amplified sequence 1 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12359
95 % 4 4 4209
90 % 4 4 4274
70 % 4 4 4239
50 % 4 4 4152
40 % 4 4 4089
30 % 4 4 4009
Entity #37 | Chains: l1,l2,l3,l4,l5,l6
Density-regulated protein protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 5584
95 % 3 3 6186
90 % 3 3 6227
70 % 3 3 6181
50 % 3 3 6080
40 % 3 3 5910
30 % 3 3 5640
Entity #4 | Chains: X1,X2,X3,X4,X5,X6
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 100 470
95 % 1 104 566
90 % 1 105 577
70 % 41 233 218
50 % 41 246 211
40 % 41 246 214
30 % 41 246 223
Entity #5 | Chains: a1,a2,a3,a4,a5,a6
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 47 1044
95 % 1 61 1057
90 % 1 61 1099
70 % 1 62 1121
50 % 3 97 674
40 % 5 99 661
30 % 5 99 683
Entity #6 | Chains: c1,c2,c3,c4,c5,c6
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 80 588
95 % 1 80 775
90 % 1 80 806
70 % 39 220 233
50 % 41 234 223
40 % 41 235 226
30 % 41 235 232
Entity #7 | Chains: d1,d2,d3,d4,d5,d6
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 95 498
95 % 1 99 620
90 % 1 99 648
70 % 39 190 266
50 % 39 198 285
40 % 39 198 294
30 % 39 198 307
Entity #8 | Chains: f1,f2,f3,f4,f5,f6
Ribosomal protein S27a protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 11812
95 % 1 62 1036
90 % 1 62 1078
70 % 4 96 645
50 % 6 100 635
40 % 6 103 658
30 % 6 103 677
Entity #9 | Chains: g1,g2,g3,g4,g5,g6
Receptor of activated protein C kinase 1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 101 445
95 % 2 101 567
90 % 2 101 590
70 % 3 103 595
50 % 46 197 268
40 % 48 203 256
30 % 48 204 267

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5VYC 2 U1, U2, U3, U4, U5, U6 40S ribosomal protein S20 9606
2 4KZZ 21 U 40S Ribosomal Protein S20 9986
3 4KZX 21 U 40S ribosomal protein S20 9986
4 4KZY 21 U 40S Ribosomal Protein S20 9986
5 6ZP4 28 h 40S ribosomal protein S20 9606
6 6ZOJ 22 U 40S ribosomal protein S20 9606
7 6ZOL 11 U 40S ribosomal protein S20 9606
8 6ZON 30 h 40S ribosomal protein S20 9606
9 6ZMO 64 SU 40S ribosomal protein S20 9606
10 6ZMT 21 V 40S ribosomal protein S20 9606
11 6ZME 64 SU 40S ribosomal protein S20 9606
12 6ZMI 64 SU 40S ribosomal protein S20 9606
13 6ZLW 21 V 40S ribosomal protein S20 9606
14 6ZM7 64 SU 40S ribosomal protein S20 9606
15 6Z6L 62 SU 40S ribosomal protein S20 9606
16 6Z6M 62 SU 40S ribosomal protein S20 9606
17 6Z6N 62 SU 40S ribosomal protein S20 9606
18 6YBS 5 h 40S ribosomal protein S20 9606
19 6YAL 21 W 40S ribosomal protein uS10 9986
20 6YAM 21 W 40S ribosomal protein uS10 9986
21 6W2S 30 V uS10 9986
22 6W2T 29 V uS10 9986
23 6Y57 69 SU 40S ribosomal protein S20 9606
24 6Y2L 69 SU 40S ribosomal protein S20 9606
25 6Y0G 70 SU 40S ribosomal protein S20 9606
26 6SGC 22 V1 Ribosomal_S10 domain-containing protein 9986
27 6P5I 22 V uS10 9986
28 6P5J 22 V uS10 9986
29 6P5K 68 V uS10 9986
30 6P5N 68 V uS10 9986
31 6P4G 22 V uS10 9986
32 6P4H 23 V uS10 9986
33 6IP5 62 21 40S ribosomal protein S20 9606
34 6IP6 61 21 40S ribosomal protein S20 9606
35 6IP8 61 21 40S ribosomal protein S20 9606
36 6HCQ 25 V2 uS10 9986
37 6HCJ 25 V2 uS10 9986
38 6HCM 22 V1 uS10 9986
39 6HCF 22 V1 uS10 9986
40 6D9J 70 VV uS10 9986
41 6D90 71 VV uS10 9986
42 6G5H 31 U 40S ribosomal protein S20 9606
43 6G5I 22 U 40S ribosomal protein S20 9606
44 6G51 34 U 40S ribosomal protein S20 9606
45 6G53 33 U 40S ribosomal protein S20 9606
46 6EK0 63 SU 40S ribosomal protein S20 9606
47 5OA3 25 U 40S ribosomal protein S20 9606
48 5LZS 71 UU uS10 9986
49 5LZT 72 UU uS10 9986
50 5LZU 71 UU uS10 9986
51 5LZV 72 UU uS10 9986
52 5LZW 72 UU uS10 9986
53 5LZX 72 UU uS10 9986
54 5LZY 70 UU uS10 9986
55 5LZZ 72 UU uS10 9986
56 5T2C 76 AB 40S ribosomal protein S20 9606
57 5LKS 62 SU 40S ribosomal protein S20 9606
58 5FLX 22 U 40S RIBOSOMAL PROTEIN S20 9986
59 5A2Q 23 U RIBOSOMAL PROTEIN US10 9606
60 4UG0 63 SU 40S RIBOSOMAL PROTEIN S20 9606
61 5AJ0 70 BU 40S ribosomal protein S20 9606
62 4D61 22 U 40S RIBOSOMAL PROTEIN S20 9986
63 4D5L 22 U 40S RIBOSOMAL PROTEIN US10 9986
64 4V3P 8 SJ 40S ribosomal protein S20 4565
65 3J7P 70 SU Ribosomal protein uS10 9823
66 3J7R 71 SU Ribosomal protein uS10 9823
67 4UJC 71 CU 40S RIBOSOMAL PROTEIN US10 9986
68 4UJD 71 CU 40S RIBOSOMAL PROTEIN US10 9986
69 4UJE 25 BU 40S RIBOSOMAL PROTEIN S20 9986
70 4V7E 15 BU 40S ribosomal protein S10 4565
71 4V6W 3 AU 40S ribosomal protein S20 7227
72 4V6X 3 AU 40S ribosomal protein S20 9606
73 4V5Z 17 Aj 40S Ribosomal protein S20e 9612