5VYC

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.


Sequence Similarity Clusters for the Entities in PDB 5VYC

Entity #1 | Chains: T1,T2,T3,T4,T5,T6
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 45 1058
95 % 1 87 675
90 % 1 87 709
70 % 1 87 740
50 % 39 176 304
40 % 39 176 316
30 % 41 180 314
Entity #10 | Chains: C1,C2,C3,C4,C5,C6
40S ribosomal protein S2 protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1749
95 % 1 41 1543
90 % 1 53 1227
70 % 1 54 1244
50 % 1 57 1216
40 % 1 57 1256
30 % 1 57 1291
Entity #11 | Chains: G1,G2,G3,G4,G5,G6
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 85 524
95 % 1 86 682
90 % 1 86 711
70 % 1 92 691
50 % 39 183 288
40 % 39 188 290
30 % 39 188 310
Entity #12 | Chains: J1,J2,J3,J4,J5,J6
40S ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 86 515
95 % 1 86 695
90 % 1 86 724
70 % 39 186 251
50 % 41 201 235
40 % 41 209 235
30 % 41 209 247
Entity #13 | Chains: M1,M2,M3,M4,M5,M6
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 66 695
95 % 1 79 751
90 % 1 79 788
70 % 1 84 764
50 % 1 85 781
40 % 1 85 817
30 % 1 85 859
Entity #14 | Chains: N1,N2,N3,N4,N5,N6
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 86 510
95 % 1 86 689
90 % 1 86 716
70 % 39 195 241
50 % 41 198 242
40 % 41 206 238
30 % 41 207 249
Entity #15 | Chains: O1,O2,O3,O4,O5,O6
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 74 607
95 % 1 74 821
90 % 1 82 764
70 % 41 199 228
50 % 41 200 237
40 % 41 200 248
30 % 41 200 262
Entity #16 | Chains: W1,W2,W3,W4,W5,W6
40S ribosomal protein S15a protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 87 499
95 % 1 87 668
90 % 1 87 702
70 % 40 202 231
50 % 43 213 221
40 % 43 213 231
30 % 391 809 22
Entity #17 | Chains: Y1,Y2,Y3,Y4,Y5,Y6
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 78 573
95 % 1 86 685
90 % 1 86 713
70 % 1 87 735
50 % 38 193 263
40 % 38 193 277
30 % 38 193 291
Entity #18 | Chains: Z1,Z2,Z3,Z4,Z5,Z6
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 59 786
95 % 1 59 1062
90 % 1 59 1102
70 % 1 60 1113
50 % 1 60 1153
40 % 1 61 1185
30 % 1 61 1230
Entity #19 | Chains: b1,b2,b3,b4,b5,b6
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 86 512
95 % 1 86 694
90 % 1 86 722
70 % 38 176 269
50 % 40 188 264
40 % 40 188 278
30 % 40 188 292
Entity #2 | Chains: U1,U2,U3,U4,U5,U6
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 56 823
95 % 1 58 1078
90 % 1 58 1118
70 % 1 59 1145
50 % 1 61 1126
40 % 1 61 1165
30 % 1 61 1213
Entity #20 | Chains: e1,e2,e3,e4,e5,e6
40S ribosomal protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 14094
95 % 1 31 2007
90 % 1 31 2068
70 % 1 31 2124
50 % 1 32 2076
40 % 1 32 2110
30 % 1 32 2142
Entity #21 | Chains: i1,i2,i3,i4,i5,i6
Human 18S ribosomal RNA rna, length: 1869 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: A1,A2,A3,A4,A5,A6
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1768
95 % 1 55 1150
90 % 1 55 1190
70 % 1 55 1224
50 % 1 55 1258
40 % 1 55 1306
30 % 1 55 1339
Entity #23 | Chains: B1,B2,B3,B4,B5,B6
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 52 917
95 % 1 59 1075
90 % 1 59 1113
70 % 1 59 1152
50 % 1 61 1129
40 % 40 162 337
30 % 40 162 356
Entity #24 | Chains: D1,D2,D3,D4,D5,D6
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 43 1112
95 % 1 75 802
90 % 1 75 836
70 % 1 76 859
50 % 40 170 317
40 % 40 170 330
30 % 40 170 349
Entity #25 | Chains: E1,E2,E3,E4,E5,E6
40S ribosomal protein S4, X isoform protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 55 859
95 % 1 74 820
90 % 1 86 723
70 % 38 182 262
50 % 40 192 253
40 % 40 192 265
30 % 40 200 263
Entity #26 | Chains: F1,F2,F3,F4,F5,F6
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 88 492
95 % 1 88 658
90 % 1 88 692
70 % 1 103 596
50 % 41 203 229
40 % 41 203 242
30 % 41 203 256
Entity #27 | Chains: H1,H2,H3,H4,H5,H6
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 85 526
95 % 1 86 688
90 % 1 86 721
70 % 1 87 738
50 % 38 189 269
40 % 38 189 286
30 % 40 192 282
Entity #28 | Chains: I1,I2,I3,I4,I5,I6
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 78 572
95 % 1 86 686
90 % 1 86 714
70 % 1 86 743
50 % 40 191 256
40 % 40 195 257
30 % 40 195 273
Entity #29 | Chains: K1,K2,K3,K4,K5,K6
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 53 905
95 % 1 55 1158
90 % 1 55 1199
70 % 1 55 1227
50 % 1 56 1227
40 % 1 57 1264
30 % 1 57 1300
Entity #3 | Chains: V1,V2,V3,V4,V5,V6
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 66 693
95 % 1 85 703
90 % 1 85 732
70 % 1 86 746
50 % 38 172 315
40 % 38 172 328
30 % 38 172 346
Entity #30 | Chains: L1,L2,L3,L4,L5,L6
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 87 498
95 % 1 87 667
90 % 1 87 701
70 % 1 88 729
50 % 41 198 240
40 % 41 198 249
30 % 41 198 264
Entity #31 | Chains: P1,P2,P3,P4,P5,P6
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 33 1434
95 % 1 86 693
90 % 1 86 720
70 % 1 88 727
50 % 40 181 294
40 % 40 189 287
30 % 40 189 304
Entity #32 | Chains: Q1,Q2,Q3,Q4,Q5,Q6
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 78 579
95 % 1 78 768
90 % 1 78 808
70 % 1 81 799
50 % 41 192 250
40 % 41 200 247
30 % 41 201 261
Entity #33 | Chains: R1,R2,R3,R4,R5,R6
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 31 1522
95 % 1 87 680
90 % 1 87 708
70 % 1 88 733
50 % 40 178 295
40 % 40 178 306
30 % 40 178 330
Entity #34 | Chains: S1,S2,S3,S4,S5,S6
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 88 493
95 % 1 88 664
90 % 1 88 699
70 % 39 185 252
50 % 41 194 246
40 % 41 204 241
30 % 41 204 252
Entity #35 | Chains: j1,j2,j3,j4,j5,j6
60S ribosomal protein L41 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 80 551
95 % 1 83 721
90 % 1 83 753
70 % 38 164 284
50 % 38 164 329
40 % 38 164 341
30 % 38 164 361
Entity #36 | Chains: k1,k2,k3,k4,k5,k6
Malignant T-cell-amplified sequence 1 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 13051
95 % 4 4 4299
90 % 4 4 4353
70 % 4 4 4321
50 % 4 4 4221
40 % 4 4 4165
30 % 4 4 4071
Entity #37 | Chains: l1,l2,l3,l4,l5,l6
Density-regulated protein protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 5459
95 % 3 3 6035
90 % 3 3 6323
70 % 3 3 6124
50 % 3 3 5953
40 % 3 3 5731
30 % 3 3 5540
Entity #4 | Chains: X1,X2,X3,X4,X5,X6
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 85 520
95 % 1 89 651
90 % 1 90 674
70 % 41 205 222
50 % 41 215 217
40 % 41 215 228
30 % 41 215 237
Entity #5 | Chains: a1,a2,a3,a4,a5,a6
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 35 1354
95 % 1 49 1298
90 % 1 49 1336
70 % 1 50 1341
50 % 3 81 775
40 % 5 83 758
30 % 5 83 793
Entity #6 | Chains: c1,c2,c3,c4,c5,c6
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 67 683
95 % 1 67 902
90 % 1 67 936
70 % 39 193 246
50 % 41 204 228
40 % 41 205 239
30 % 41 205 251
Entity #7 | Chains: d1,d2,d3,d4,d5,d6
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 81 545
95 % 1 85 697
90 % 1 85 726
70 % 39 171 279
50 % 39 179 298
40 % 39 179 311
30 % 39 179 332
Entity #8 | Chains: f1,f2,f3,f4,f5,f6
Ribosomal protein S27a protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 11471
95 % 1 50 1265
90 % 1 50 1298
70 % 4 82 731
50 % 6 86 726
40 % 6 89 732
30 % 6 89 760
Entity #9 | Chains: g1,g2,g3,g4,g5,g6
Receptor of activated protein C kinase 1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 489
95 % 2 87 656
90 % 2 87 689
70 % 3 89 694
50 % 46 178 276
40 % 48 184 266
30 % 48 185 278

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6VPQ 1 A, B, C, D, E, F Density-regulated protein 9606
2 6VPR 1 A, B Density-regulated protein 9606
3 5VYC 37 l1, l2, l3, l4, l5, l6 Density-regulated protein 9606