Sequence Similarity Clusters for the Entities in PDB 6CAO

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 331 34
95 % 226 332 55 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 226 332 59
70 % 226 332 67
50 % 256 536 27
40 % 256 536 35
30 % 256 573 31
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 333 30
95 % 226 333 50 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 226 333 56
70 % 226 333 64
50 % 255 534 30
40 % 255 534 37
30 % 255 534 41
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 55 737
95 % 226 340 44 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 226 340 48
70 % 256 538 17
50 % 256 556 22
40 % 256 556 27
30 % 256 556 33
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 334 29
95 % 226 334 49 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 226 334 53
70 % 226 334 62
50 % 258 540 28
40 % 258 543 33
30 % 258 543 38
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 332 33
95 % 226 332 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 226 332 58
70 % 226 353 50
50 % 226 353 87
40 % 226 353 102
30 % 226 353 106
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 336 27
95 % 230 341 43 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 230 341 47
70 % 230 341 56
50 % 262 552 23
40 % 262 552 29
30 % 262 552 34
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 328 35
95 % 226 333 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 226 333 55
70 % 226 333 63
50 % 226 333 93
40 % 226 333 108
30 % 226 333 113
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 225 56
95 % 224 326 57 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 225 330 61
70 % 225 330 70
50 % 225 330 95
40 % 225 330 111
30 % 225 330 116
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 47 670
95 % 30 55 752 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 30 55 776
70 % 30 55 826
50 % 30 55 853
40 % 30 55 892
30 % 30 55 930
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 45 717
95 % 23 45 997 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 23 45 1037
70 % 227 336 58
50 % 256 541 26
40 % 256 541 32
30 % 256 541 37
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 332 31
95 % 226 334 47 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 226 334 52
70 % 226 334 61
50 % 255 532 31
40 % 255 538 34
30 % 255 538 39
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 205 276 48
95 % 226 332 56 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 226 332 60
70 % 226 332 68
50 % 226 332 94
40 % 226 332 109
30 % 226 332 114
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 290 46
95 % 206 290 67 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 206 290 73
70 % 206 290 81
50 % 206 290 106
40 % 206 290 127
30 % 206 290 134
Entity #22 | Chains: W
RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3') rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 56 537
95 % 30 56 720 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 30 56 753
70 % 30 56 795
50 % 53 171 257
40 % 53 171 276
30 % 53 177 276
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 224 326 36
95 % 226 334 46 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 226 334 51
70 % 226 334 60
50 % 255 516 34
40 % 255 546 30
30 % 255 546 35
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 333 32
95 % 226 333 52 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 226 333 57
70 % 226 333 65
50 % 256 536 29
40 % 256 536 36
30 % 256 536 40
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 228 338 25
95 % 234 344 39 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 234 344 43
70 % 234 344 53
50 % 234 344 89
40 % 234 344 103
30 % 235 372 98
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 337 26
95 % 227 338 45 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 227 338 50
70 % 227 336 59
50 % 256 473 54
40 % 256 479 66
30 % 256 479 69
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 333 28
95 % 226 333 48 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 227 337 49
70 % 227 337 57
50 % 258 545 24
40 % 258 551 28
30 % 292 741 22
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 171 232 60
95 % 226 333 53 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 226 333 54
70 % 226 333 66
50 % 255 529 32
40 % 255 529 38
30 % 255 529 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures