6CAO

Structure of the ribosomal decoding complex at ambient temperature


Sequence Similarity Clusters for the Entities in PDB 6CAO

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 234 341 35
95 % 235 342 58
90 % 235 342 64
70 % 235 342 74
50 % 266 633 23
40 % 266 633 31
30 % 266 676 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 343 31
95 % 235 343 52
90 % 235 343 58
70 % 235 343 70
50 % 265 625 27
40 % 265 625 37
30 % 267 639 35
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 55 841
95 % 235 350 45
90 % 235 350 51
70 % 266 624 16
50 % 266 648 21
40 % 266 648 27
30 % 266 648 34
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 344 29
95 % 235 344 49
90 % 235 344 56
70 % 235 344 68
50 % 268 631 25
40 % 268 634 34
30 % 268 634 39
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 342 33
95 % 235 342 57
90 % 235 342 63
70 % 235 349 61
50 % 235 368 88
40 % 235 368 106
30 % 235 368 108
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 346 27
95 % 239 351 44
90 % 239 351 50
70 % 239 351 59
50 % 272 643 22
40 % 272 643 29
30 % 272 643 36
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 338 36
95 % 235 343 53
90 % 235 343 59
70 % 235 343 69
50 % 235 343 93
40 % 235 343 111
30 % 235 343 117
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 235 59
95 % 233 336 60
90 % 234 340 67
70 % 234 340 76
50 % 234 340 95
40 % 234 340 115
30 % 234 340 121
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 47 779
95 % 30 55 879
90 % 30 55 909
70 % 30 55 933
50 % 30 55 965
40 % 30 55 995
30 % 30 55 1040
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 45 811
95 % 23 45 1089
90 % 23 45 1132
70 % 236 346 64
50 % 266 632 24
40 % 266 632 32
30 % 266 632 38
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 342 30
95 % 235 344 48
90 % 235 344 54
70 % 235 344 66
50 % 265 618 29
40 % 265 624 36
30 % 265 624 41
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 286 49
95 % 235 342 56
90 % 235 342 62
70 % 235 342 73
50 % 235 342 94
40 % 235 342 112
30 % 235 342 118
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 300 47
95 % 215 300 68
90 % 215 300 76
70 % 215 300 88
50 % 215 300 108
40 % 215 300 133
30 % 215 300 140
Entity #22 | Chains: W
RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3') rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 56 633
95 % 30 56 850
90 % 30 56 881
70 % 30 56 906
50 % 54 208 261
40 % 54 208 266
30 % 54 214 265
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 233 336 37
95 % 235 344 47
90 % 235 344 55
70 % 235 344 67
50 % 235 364 89
40 % 265 632 33
30 % 265 638 37
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 343 32
95 % 235 343 54
90 % 235 343 60
70 % 235 343 71
50 % 266 627 26
40 % 266 627 35
30 % 266 627 40
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 237 348 25
95 % 245 356 42
90 % 245 356 48
70 % 245 356 57
50 % 245 356 90
40 % 245 356 107
30 % 245 356 109
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 236 347 26
95 % 236 348 46
90 % 236 348 53
70 % 236 346 65
50 % 266 533 48
40 % 266 539 62
30 % 266 539 69
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 343 28
95 % 235 343 50
90 % 236 347 52
70 % 236 347 63
50 % 237 377 87
40 % 268 642 28
30 % 302 896 20
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 242 65
95 % 235 343 55
90 % 235 343 61
70 % 235 343 72
50 % 265 620 28
40 % 265 620 39
30 % 265 620 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures