Sequence Similarity Clusters for the Entities in PDB 6CAO

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 226 333 36
95 % 227 334 58 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 227 334 62
70 % 227 334 74
50 % 257 545 26
40 % 257 545 35
30 % 257 578 34
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 335 34
95 % 227 335 55 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 227 335 58
70 % 227 335 71
50 % 256 539 30
40 % 256 539 40
30 % 256 539 43
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 55 752
95 % 227 342 44 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 227 342 49
70 % 257 543 17
50 % 257 561 22
40 % 257 561 29
30 % 257 561 35
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 336 31
95 % 227 336 51 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 227 336 55
70 % 227 336 68
50 % 259 545 28
40 % 259 548 37
30 % 259 548 40
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 334 35
95 % 227 334 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 227 334 61
70 % 227 355 53
50 % 227 355 89
40 % 227 355 105
30 % 227 355 105
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 338 28
95 % 231 343 42 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 231 343 47
70 % 231 343 59
50 % 263 557 23
40 % 263 557 32
30 % 263 557 36
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 330 37
95 % 227 335 52 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 227 335 59
70 % 227 335 72
50 % 227 335 95
40 % 227 335 111
30 % 227 335 113
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 170 227 57
95 % 225 328 59 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 226 332 64
70 % 226 332 75
50 % 226 332 97
40 % 226 332 113
30 % 226 332 115
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 47 696
95 % 30 55 762 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 30 55 788
70 % 30 55 834
50 % 30 55 856
40 % 30 55 891
30 % 30 55 935
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 45 723
95 % 23 45 999 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 23 45 1041
70 % 228 338 63
50 % 257 546 25
40 % 257 546 34
30 % 257 546 38
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 334 33
95 % 227 336 48 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 227 336 53
70 % 227 336 66
50 % 256 537 31
40 % 256 543 38
30 % 256 543 41
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 278 49
95 % 227 334 56 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 227 334 60
70 % 227 334 73
50 % 227 334 96
40 % 227 334 112
30 % 227 334 114
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 207 292 47
95 % 207 292 68 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 207 292 73
70 % 207 292 84
50 % 207 292 107
40 % 207 292 130
30 % 207 292 137
Entity #22 | Chains: W
RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3') rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 56 544
95 % 30 56 739 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 30 56 770
70 % 30 56 811
50 % 53 171 273
40 % 53 171 287
30 % 53 177 293
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 328 38
95 % 227 336 49 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 227 336 54
70 % 227 336 67
50 % 256 521 34
40 % 256 551 33
30 % 256 551 37
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 335 32
95 % 227 335 54 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 227 335 56
70 % 227 335 69
50 % 257 541 29
40 % 257 541 39
30 % 257 541 42
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 340 26
95 % 237 348 39 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 237 348 45
70 % 237 348 56
50 % 237 348 91
40 % 237 348 107
30 % 237 348 108
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 228 339 27
95 % 228 340 47 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 228 340 52
70 % 228 338 64
50 % 257 475 54
40 % 257 481 70
30 % 257 481 71
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 335 29
95 % 227 335 50 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 228 339 51
70 % 228 339 62
50 % 259 550 24
40 % 259 556 31
30 % 293 752 23
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 234 63
95 % 227 335 53 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 227 335 57
70 % 227 335 70
50 % 256 534 32
40 % 256 534 41
30 % 256 534 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures