Sequence Similarity Clusters for the Entities in PDB 6CAS

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 258 333 36
95 % 259 334 58 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 259 334 63
70 % 259 334 75
50 % 291 549 26
40 % 291 549 34
30 % 291 586 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 335 33
95 % 259 335 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 259 335 61
70 % 259 335 72
50 % 290 543 29
40 % 290 543 38
30 % 290 543 41
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 55 781
95 % 259 342 45 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 259 342 51
70 % 291 547 17
50 % 291 565 22
40 % 291 565 28
30 % 291 565 33
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 336 31
95 % 259 336 52 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 259 336 57
70 % 259 336 69
50 % 293 549 27
40 % 293 552 35
30 % 293 552 38
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 334 35
95 % 259 334 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 259 334 64
70 % 259 341 61
50 % 259 355 90
40 % 259 355 104
30 % 259 355 106
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 338 29
95 % 263 343 43 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 263 343 48
70 % 263 343 58
50 % 297 561 23
40 % 297 561 30
30 % 297 561 34
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 330 37
95 % 259 335 53 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 259 335 58
70 % 259 335 70
50 % 259 335 95
40 % 259 335 111
30 % 259 335 116
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 193 227 57
95 % 257 328 60 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 258 332 65
70 % 258 332 76
50 % 258 332 97
40 % 258 332 113
30 % 258 332 119
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 193 225 60
95 % 224 279 76 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 0.9
PDBFlex
90 % 224 279 80
70 % 224 279 91
50 % 224 279 111
40 % 224 279 129
30 % 224 279 140
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 293 44
95 % 232 293 67 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 232 293 71
70 % 260 338 63
50 % 291 550 25
40 % 291 550 33
30 % 291 550 37
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 258 334 32
95 % 259 336 48 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 259 336 55
70 % 259 336 66
50 % 290 541 30
40 % 290 547 36
30 % 290 547 39
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 278 48
95 % 259 334 57 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 259 334 62
70 % 259 334 74
50 % 259 334 96
40 % 259 334 112
30 % 259 334 117
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 292 46
95 % 233 292 69 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 233 292 74
70 % 233 292 85
50 % 233 292 107
40 % 233 292 127
30 % 233 292 137
Entity #22 | Chains: Y
RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: W
RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3') rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 224 279 49
95 % 224 279 75 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 224 279 79
70 % 224 279 90
50 % 232 366 87
40 % 232 366 102
30 % 232 366 104
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 257 328 38
95 % 259 336 49 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 259 336 56
70 % 259 336 67
50 % 259 360 89
40 % 290 555 31
30 % 290 555 35
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 335 34
95 % 259 335 55 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 259 335 60
70 % 259 335 73
50 % 291 545 28
40 % 291 545 37
30 % 291 545 40
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 261 340 26
95 % 269 348 40 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 269 348 44
70 % 269 348 56
50 % 269 348 91
40 % 269 348 106
30 % 269 348 109
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 260 339 27
95 % 260 340 47 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 260 340 54
70 % 260 338 65
50 % 289 479 52
40 % 289 485 68
30 % 289 485 71
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 335 30
95 % 259 335 50 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 260 339 53
70 % 260 339 62
50 % 261 364 86
40 % 293 560 29
30 % 333 763 21
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 196 234 62
95 % 259 335 54 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 259 335 59
70 % 259 335 71
50 % 290 538 31
40 % 290 538 39
30 % 290 538 43

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures