Sequence Similarity Clusters for the Entities in PDB 6CAS

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 258 333 36
95 % 259 334 58 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 259 334 63
70 % 259 334 74
50 % 291 549 26
40 % 291 549 34
30 % 291 586 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 335 34
95 % 259 335 55 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 259 335 60
70 % 259 335 72
50 % 290 543 29
40 % 290 543 38
30 % 290 543 41
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 55 763
95 % 259 342 45 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 259 342 49
70 % 291 547 17
50 % 291 565 22
40 % 291 565 28
30 % 291 565 33
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 336 30
95 % 259 336 50 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 259 336 56
70 % 259 336 68
50 % 293 549 27
40 % 293 552 35
30 % 293 552 38
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 334 35
95 % 259 334 56 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 259 334 61
70 % 259 341 60
50 % 259 355 89
40 % 259 355 103
30 % 259 355 103
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 338 29
95 % 263 343 43 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 263 343 47
70 % 263 343 58
50 % 297 561 23
40 % 297 561 30
30 % 297 561 34
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 330 37
95 % 259 335 54 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 259 335 59
70 % 259 335 70
50 % 259 335 94
40 % 259 335 109
30 % 259 335 112
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 193 227 58
95 % 257 328 59 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 258 332 64
70 % 258 332 75
50 % 258 332 96
40 % 258 332 111
30 % 258 332 114
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 193 225 62
95 % 224 279 74 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 0.9
PDBFlex
90 % 224 279 79
70 % 224 279 89
50 % 224 279 112
40 % 224 279 130
30 % 224 279 140
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 293 44
95 % 232 293 65 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 232 293 71
70 % 260 338 63
50 % 291 550 24
40 % 291 550 32
30 % 291 550 36
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 258 334 32
95 % 259 336 49 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 259 336 54
70 % 259 336 67
50 % 290 541 30
40 % 290 547 36
30 % 290 547 39
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 278 48
95 % 259 334 57 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 259 334 62
70 % 259 334 73
50 % 259 334 95
40 % 259 334 110
30 % 259 334 113
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 292 46
95 % 233 292 68 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 233 292 74
70 % 233 292 85
50 % 233 292 108
40 % 233 292 127
30 % 233 292 135
Entity #22 | Chains: Y
RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: W
RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3') rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 224 279 49
95 % 224 279 75 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 224 279 80
70 % 224 279 90
50 % 232 366 86
40 % 232 366 101
30 % 232 366 101
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 257 328 38
95 % 259 336 48 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 259 336 55
70 % 259 336 65
50 % 259 360 88
40 % 290 555 31
30 % 290 555 35
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 335 33
95 % 259 335 53 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 259 335 58
70 % 259 335 71
50 % 291 545 28
40 % 291 545 37
30 % 291 545 40
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 261 340 26
95 % 269 348 40 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 269 348 44
70 % 269 348 56
50 % 269 348 90
40 % 269 348 104
30 % 269 348 105
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 260 339 27
95 % 260 340 47 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 260 340 52
70 % 260 338 64
50 % 289 479 51
40 % 289 485 67
30 % 289 485 70
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 335 31
95 % 259 335 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 260 339 51
70 % 260 339 62
50 % 261 364 84
40 % 293 560 29
30 % 333 760 21
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 196 234 63
95 % 259 335 52 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 259 335 57
70 % 259 335 69
50 % 290 538 31
40 % 290 538 39
30 % 290 538 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures