6HGF

Crystal structure of Alpha1-antichymotrypsin variant NewBG-II: a new binding globulin in complex with cortisol


Sequence Similarity Clusters for the Entities in PDB 6HGF

Entity #1 | Chains: A
Alpha-1-antichymotrypsin protein, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79976
95 % 6 27 2913
90 % 6 27 2845
70 % 6 27 2932
50 % 10 73 849
40 % 12 107 495
30 % 15 168 262
Entity #2 | Chains: B
Alpha-1-antichymotrypsin protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 12 6086
95 % 6 17 4828
90 % 6 17 5060
70 % 6 21 3987
50 % 6 21 3925
40 % 6 21 3804
30 % 6 21 3722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6HGM 1 A Alpha-1-antichymotrypsin - all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
2 5CDZ 1 A Conserpin in the latent state 32630
3 5OM2 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
4 3NDD 1 A Alpha-1-antitrypsin P1 cleaved antitrypsin, nterm, UNP residues 46-382 9606
5 6HGN 1 A Alpha-1-antichymotrypsin - all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density- residues following the sequence ..EVLFQ are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between EVLFQ-GPLV 9606
6 6HGI 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
7 6I7U 1 A Alpha-1-antitrypsin 9606
8 5OM5 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
9 3DY0 1 A N-terminus Plasma serine protease inhibitor complexed with Heparin from Bos taurus lungs PPE cleaved, residues 37-372 9606
10 6HGF 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
11 5NBU 1 A Alpha-1-antitrypsin 9606
12 3B9F 3 I Plasma serine protease inhibitor 9606
13 5OM7 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
14 6HGG 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
15 6I4V 1 A Alpha-1-antitrypsin 9606
16 6HGD 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
17 3NE4 1 A Alpha-1-antitrypsin UNP residues 48-418 9606
18 6HGJ 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
19 5NBV 1 A Alpha-1-antitrypsin 9606
20 6FTP 1 A Alpha-1-antichymotrypsin All N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density. The protein is splitted into chain A and chain B, as it belongs to the serine proteinase inhibitor (serpin) family and is proteolytically cleaved C-terminal of Gln360. The residues Gln360 and Arg376, which is the first residue visible in the electron density, are 70 angstrom apart because of the serpin-typical conformational change upon proteolytical cleavage. The sequence following the P1-P1' scissile bond, namely residues GPL..KQA, are part of chain B. 9606
21 6HGK 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
22 5OM6 1 A, C Alpha-1-antichymotrypsin N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density. C-terminal residues (ITA...KQA) are in chain I and K UNP residues 36-383 9606
23 6ROD 1 A Alpha-1-antitrypsin 9606
24 4PYW 1 A Alpha-1-antitrypsin 9606
25 6HGL 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
26 5OM3 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
27 6HGH 1 A alpha1-Antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
28 6IAY 1 A Alpha-1-antitrypsin 9606
29 2QUG 1 A Alpha-1-antitrypsin 9606
30 1YXA 1 A, B serine (or cysteine) proteinase inhibitor, clade A, member 3N 10090
31 1AS4 1 A ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN CHAIN A CONTAINS RESIDUES 20 - 358, CHAIN B CONTAINS RESIDUES 359 - 393 9606
32 2OL2 1 A, B Plasma serine protease inhibitor 9606
33 1QLP 1 A ALPHA-1-ANTITRYPSIN 9606
34 5OM8 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
35 1HP7 1 A ALPHA-1-ANTITRYPSIN 9606
36 5HGC 1 A Serpin 59729
37 1OPH 1 A Alpha-1-antitrypsin precursor alpha-1-antitrypsin (RESIDUES 26-418) 9606
38 1QMN 1 A ALPHA-1-ANTICHYMOTRYPSIN 9606
39 1IZ2 1 A alpha1-antitrypsin 9606
40 5CE0 1 A, B Native conserpin with Z-variant (E342K) 32630
41 3DRM 1 A Alpha-1-antitrypsin 9606
42 3CAA 1 A ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN 9606
43 5CDX 1 A Conserpin 32630
44 2HI9 1 A, B, C Plasma serine protease inhibitor residues 25-387 9606
45 6EE5 1 A Conserpin-AATRCL 32630
46 1LQ8 1 A, C, E, G plasma serine protease inhibitor N-terminal fragment from elastase cleavage, residues 30-375 9606
47 3CWL 1 A Alpha-1-antitrypsin 9606
48 2ACH 1 A ALPHA 1-ANTICHYMOTRYPSIN 9606
49 1OO8 1 A Alpha-1-antitrypsin precursor RESIDUES 26-418 9606
50 1EZX 1 A ALPHA-1-ANTITRYPSIN N-TERMINAL FRAGMENT OF PROTEOLYTIC CLEAVAGE AT MET358-SER359 9606
51 3CWM 1 A Alpha-1-antitrypsin 9606
52 1ATU 1 A ALPHA-1-ANTITRYPSIN 9606
53 1QMB 1 A ALPHA-1-ANTITRYPSIN RESIDUES 49-69,71-302,304-376 9606
54 6HGE 1 A Alpha-1-antichymotrypsin - all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - dimethyl-lysines (MLY) have been modelled instead of lysines (LYS) when the electron density confirmed the success of the reductive methylation process of surface lysines 9606
55 6HGE 2 B Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
56 6HGE 3 C Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
57 6HGE 4 D Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
58 3NDF 1 A Alpha-1-antitrypsin P1 cleaved antitrypsin, nterm, UNP residues 46-382 9606
59 4CAA 1 A ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN 9606
60 3DLW 1 A Alpha-1-antichymotrypsin 9606
61 7API 1 A ALPHA 1-ANTITRYPSIN 9606
62 1PSI 1 A ALPHA=1=-ANTITRYPSIN 9606
63 1D5S 1 A P1-ARG ANTITRYPSIN N-TERMINAL FRAGMENT 9606
64 9API 1 A ALPHA 1-ANTITRYPSIN 9606
65 8API 1 A ALPHA-1 ANTITRYPSIN (CHAIN A) 9606
66 6HX4 1 A, B Alpha-1-antitrypsin 9606
67 1KCT 1 A ALPHA1-ANTITRYPSIN 9606
68 6F02 1 A, C Kallistatin human Kallistatin was expressed in HEK293 cells with a His6-Tag at the C-terminus 9606
69 5IO1 1 A, B Alpha-1-antitrypsin UNP residues 29-418 9606
70 3DRU 1 A, B, C Alpha-1-antitrypsin 9606
71 6I3Z 1 A Alpha-1-antitrypsin 9606
72 2D26 1 A Alpha-1-antitrypsin residues 1-358 9606
73 3T1P 1 A Alpha-1-antitrypsin unp residues 48-418 9606