6HGF

Crystal structure of Alpha1-antichymotrypsin variant NewBG-II: a new binding globulin in complex with cortisol


Sequence Similarity Clusters for the Entities in PDB 6HGF

Entity #1 | Chains: A
Alpha-1-antichymotrypsin protein, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79976
95 % 6 27 2913
90 % 6 27 2845
70 % 6 27 2932
50 % 10 73 849
40 % 12 107 495
30 % 15 215 262
Entity #2 | Chains: B
Alpha-1-antichymotrypsin protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 12 6086
95 % 6 17 4828
90 % 6 17 5060
70 % 6 21 3987
50 % 6 21 3925
40 % 6 21 3804
30 % 6 21 3722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6HGM 1 A Alpha-1-antichymotrypsin - all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
2 5OM2 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
3 6HGN 1 A Alpha-1-antichymotrypsin - all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density- residues following the sequence ..EVLFQ are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between EVLFQ-GPLV 9606
4 6HGI 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
5 5OM5 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
6 6HGF 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
7 5OM7 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
8 6HGG 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
9 6HGD 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
10 6HGJ 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
11 6FTP 1 A Alpha-1-antichymotrypsin All N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density. The protein is splitted into chain A and chain B, as it belongs to the serine proteinase inhibitor (serpin) family and is proteolytically cleaved C-terminal of Gln360. The residues Gln360 and Arg376, which is the first residue visible in the electron density, are 70 angstrom apart because of the serpin-typical conformational change upon proteolytical cleavage. The sequence following the P1-P1' scissile bond, namely residues GPL..KQA, are part of chain B. 9606
12 6HGK 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
13 5OM6 1 A, C Alpha-1-antichymotrypsin N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density. C-terminal residues (ITA...KQA) are in chain I and K UNP residues 36-383 9606
14 6HGL 1 A Alpha-1-antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
15 5OM3 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
16 6HGH 1 A alpha1-Antichymotrypsin - all N-terminal residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - residues following the sequence ..KITLL are part of chain B, as the protein is a family member of serine proteinase inhibitors (serpins) and proteolytically cleaved between KITLL-SALVE 9606
17 1AS4 1 A ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN CHAIN A CONTAINS RESIDUES 20 - 358, CHAIN B CONTAINS RESIDUES 359 - 393 9606
18 5OM8 1 A Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
19 1QMN 1 A ALPHA-1-ANTICHYMOTRYPSIN 9606
20 3CAA 1 A ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN 9606
21 2ACH 1 A ALPHA 1-ANTICHYMOTRYPSIN 9606
22 6HGE 1 A Alpha-1-antichymotrypsin - all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density - dimethyl-lysines (MLY) have been modelled instead of lysines (LYS) when the electron density confirmed the success of the reductive methylation process of surface lysines 9606
23 6HGE 2 B Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
24 6HGE 3 C Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
25 6HGE 4 D Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
26 4CAA 1 A ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN 9606
27 3DLW 1 A Alpha-1-antichymotrypsin 9606