6HGF

Crystal structure of Alpha1-antichymotrypsin variant NewBG-II: a new binding globulin in complex with cortisol


Sequence Similarity Clusters for the Entities in PDB 6HGF

Entity #1 | Chains: A
Alpha-1-antichymotrypsin protein, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62624
95 % 6 27 2703
90 % 6 27 2772
70 % 6 27 2812
50 % 10 73 809
40 % 12 107 477
30 % 15 166 240
Entity #2 | Chains: B
Alpha-1-antichymotrypsin protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 12 5832
95 % 6 17 4778
90 % 6 21 3830
70 % 6 21 3797
50 % 6 21 3714
40 % 6 21 3683
30 % 6 21 3597

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6HGM 2 B Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
2 5OM2 2 B Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
3 6HGN 2 B Alpha-1-antichymotrypsin - all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
4 6HGI 2 B Alpha-1-antichymotrypsin the residues SALVE that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
5 5OM5 2 B Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
6 6HGF 2 B Alpha-1-antichymotrypsin - the residues SALVE and the very C-terminal alanine residue could not be modelled due to missing electron density 9606
7 5OM7 2 B Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
8 6HGG 2 B Alpha-1-antichymotrypsin - the residues SALVET that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
9 6HGD 2 B Alpha-1-antichymotrypsin the residues SAL that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
10 6HGJ 2 B Alpha-1-antichymotrypsin - the residues SALVET that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
11 6FTP 2 B Alpha-1-antichymotrypsin The protein is splitted into chain A and chain B, as it belongs to the serine proteinase inhibitor (serpin) family and is proteolytically cleaved C-terminal of Gln360. The residues Gln360 and Arg376, which is the first residue visible in the electron density, are 70 angstrom apart because of the serpin-typical conformational change upon proteolytical cleavage. The sequence following the P1-P1' scissile bond, namely residues GPL..KQA, are part of chain B. The residues 361-366 (GPLVET) are missing in the PDB file because of missing electron density. 9606
12 6HGK 2 B Alpha-1-antichymotrypsin the residues SALVET that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
13 5OM6 2 B, D Alpha-1-antichymotrypsin UNP residues 384-423 9606
14 6HGL 2 B Alpha-1-antichymotrypsin the sequence SALVE that is present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
15 5OM3 2 B Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
16 6HGH 2 B Alpha-1-antichymotrypsin the residues SALVET that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
17 1AS4 2 B ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN CHAIN A CONTAINS RESIDUES 20 - 358, CHAIN B CONTAINS RESIDUES 359 - 393 9606
18 5OM8 2 B Alpha-1-antichymotrypsin all residues that are present in the sample sequence but not in the PDB file could not be modelled due to missing electron density 9606
19 3CAA 2 B ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN 9606
20 2ACH 2 B ALPHA 1-ANTICHYMOTRYPSIN 9606
21 4CAA 2 B ANTICHYMOTRYPSIN CLEAVED ANTICHYMOTRYPSIN 9606