6OGZ

In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state


Sequence Similarity Clusters for the Entities in PDB 6OGZ

Entity #1 | Chains: B
RNA (5'-R(P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
RNA (5'-R(P*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RNA-dependent RNA polymerase of rotavirus A protein, length: 1088 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 14795
95 % 16 17 3612
90 % 16 17 3670
70 % 16 17 3672
50 % 16 17 3624
40 % 16 17 3598
30 % 16 17 3515
Entity #4 | Chains: E,F,G,H,I,J,K,L,M,N
Inner capsid protein VP2 protein, length: 887 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 794
95 % 6 8 1037
90 % 8 10 996
70 % 8 10 1038
50 % 8 10 1071
40 % 8 10 1115
30 % 8 10 1155

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures