Sequence Similarity Clusters for the Entities in PDB 6OGZ

Entity #1 | Chains: B
RNA (5'-R(P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
RNA (5'-R(P*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RNA-dependent RNA polymerase of rotavirus A protein, length: 1088 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 14193
95 % 16 17 3371
90 % 16 17 3445
70 % 16 17 3621
50 % 16 17 3425
40 % 16 17 3402
30 % 16 17 3328
Entity #4 | Chains: E,F,G,H,I,J,K,L,M,N
Inner capsid protein VP2 protein, length: 887 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 741
95 % 6 8 981
90 % 8 10 918
70 % 8 10 966
50 % 8 10 1001
40 % 8 10 1045
30 % 8 10 1084

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures