6T59

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex


Sequence Similarity Clusters for the Entities in PDB 6T59

Entity #1 | Chains: A3
Ribosomal protein L8 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 68 687
95 % 1 68 930
90 % 1 68 965
70 % 43 168 273
50 % 44 181 276
40 % 111 252 200
30 % 111 252 209
Entity #10 | Chains: J3
Ribosomal protein L11 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 61 790
95 % 2 69 915
90 % 2 69 940
70 % 45 180 255
50 % 46 184 265
40 % 46 184 280
30 % 46 184 303
Entity #11 | Chains: L3
eL13 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2175
95 % 1 67 972
90 % 1 67 1009
70 % 1 67 1049
50 % 1 69 1045
40 % 43 177 305
30 % 43 177 328
Entity #12 | Chains: M3
Ribosomal protein L14 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 14 5134
95 % 1 14 6105
90 % 1 20 4113
70 % 1 39 1858
50 % 1 39 1918
40 % 1 39 1949
30 % 1 39 1978
Entity #13 | Chains: N3
Ribosomal protein L15 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 68 683
95 % 1 68 931
90 % 1 68 959
70 % 44 177 264
50 % 45 191 252
40 % 45 191 264
30 % 45 191 279
Entity #14 | Chains: O3
uL13 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 22 2857
95 % 1 68 948
90 % 1 68 999
70 % 1 68 1023
50 % 44 179 281
40 % 44 180 291
30 % 44 180 315
Entity #15 | Chains: P3
uL22 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 3244
95 % 1 36 1964
90 % 1 36 2021
70 % 1 36 2057
50 % 44 189 255
40 % 44 189 268
30 % 44 189 284
Entity #16 | Chains: Q3
eL18 protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 2748
95 % 1 64 1020
90 % 1 68 958
70 % 1 68 1004
50 % 43 178 296
40 % 43 185 285
30 % 43 185 309
Entity #17 | Chains: R3
eL19 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 65 745
95 % 1 69 920
90 % 1 69 948
70 % 1 70 973
50 % 45 179 289
40 % 45 180 297
30 % 45 180 321
Entity #18 | Chains: S3
eL20 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 33 1654
95 % 1 58 1151
90 % 1 58 1187
70 % 1 62 1127
50 % 42 170 315
40 % 43 171 325
30 % 43 172 342
Entity #19 | Chains: T3
eL21 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 67 709
95 % 1 68 928
90 % 1 68 983
70 % 1 69 997
50 % 43 169 317
40 % 43 175 316
30 % 44 182 310
Entity #2 | Chains: B3
uL3 protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 34 1586
95 % 1 68 950
90 % 1 68 985
70 % 1 69 992
50 % 44 192 245
40 % 44 192 259
30 % 44 194 271
Entity #20 | Chains: U3
eL22 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 14 5478
95 % 1 38 1811
90 % 1 38 1852
70 % 1 38 1890
50 % 1 39 1903
40 % 1 39 1936
30 % 1 39 1969
Entity #21 | Chains: V3
Ribosomal protein L23 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 68 698
95 % 1 68 927
90 % 1 68 956
70 % 44 191 226
50 % 44 192 246
40 % 44 192 260
30 % 44 192 273
Entity #22 | Chains: W3
eL24 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 42 1210
95 % 1 42 1617
90 % 1 42 1694
70 % 1 42 1694
50 % 1 43 1733
40 % 35 111 486
30 % 35 111 507
Entity #23 | Chains: X3
uL23 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 3151
95 % 1 41 1676
90 % 1 41 1715
70 % 1 44 1622
50 % 1 45 1616
40 % 2 46 1546
30 % 2 46 1580
Entity #24 | Chains: Y3
Ribosomal protein L26 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 69 675
95 % 1 69 912
90 % 1 69 945
70 % 1 65 1069
50 % 44 187 260
40 % 44 187 273
30 % 44 187 293
Entity #25 | Chains: Z3
60S ribosomal protein L27 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 67 704
95 % 1 67 968
90 % 1 67 1000
70 % 1 67 1039
50 % 42 165 328
40 % 43 178 303
30 % 43 180 320
Entity #26 | Chains: a3
uL15 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 34 1589
95 % 1 68 929
90 % 1 68 963
70 % 1 69 990
50 % 44 182 275
40 % 44 183 283
30 % 44 185 302
Entity #27 | Chains: b3
eL29 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2568
95 % 1 24 3354
90 % 1 24 3189
70 % 1 24 3227
50 % 1 24 3211
40 % 1 24 3214
30 % 1 24 3165
Entity #28 | Chains: c3
eL30 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 3183
95 % 2 41 1681
90 % 2 41 1718
70 % 2 74 910
50 % 2 41 1799
40 % 2 45 1672
30 % 2 45 1697
Entity #29 | Chains: d3
eL31 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 40 1324
95 % 1 40 1740
90 % 1 40 1775
70 % 1 41 1759
50 % 44 179 279
40 % 44 179 295
30 % 44 179 319
Entity #3 | Chains: C3
uL4 protein, length: 425 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 14 5028
95 % 1 14 5882
90 % 1 30 2501
70 % 1 30 2559
50 % 1 31 2505
40 % 44 192 261
30 % 44 192 274
Entity #30 | Chains: e3
eL32 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 68 694
95 % 1 68 953
90 % 1 68 992
70 % 1 69 995
50 % 44 183 272
40 % 44 187 274
30 % 44 188 289
Entity #31 | Chains: f3
eL33 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 34 1617
95 % 1 67 964
90 % 1 67 1003
70 % 1 67 1044
50 % 42 175 307
40 % 42 177 314
30 % 42 177 335
Entity #32 | Chains: g3
eL34 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 67 710
95 % 1 67 969
90 % 1 67 1006
70 % 1 67 1042
50 % 42 164 331
40 % 42 164 347
30 % 42 164 362
Entity #33 | Chains: h3
uL29 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 34 1616
95 % 1 69 917
90 % 1 69 942
70 % 1 69 989
50 % 43 182 280
40 % 44 193 257
30 % 44 195 270
Entity #34 | Chains: i3
60S ribosomal protein L36 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 34 1587
95 % 1 67 963
90 % 1 67 1005
70 % 1 67 1047
50 % 1 69 1035
40 % 43 172 318
30 % 43 182 313
Entity #35 | Chains: j3
Ribosomal protein L37 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 35 1541
95 % 1 36 1946
90 % 1 36 2003
70 % 43 143 307
50 % 44 187 261
40 % 44 187 275
30 % 44 187 291
Entity #36 | Chains: k3
eL38 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 64 759
95 % 1 68 926
90 % 1 68 973
70 % 1 71 959
50 % 1 71 995
40 % 1 71 1023
30 % 1 71 1064
Entity #37 | Chains: l3
eL39 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2176
95 % 1 68 958
90 % 1 68 997
70 % 43 170 271
50 % 44 183 269
40 % 44 185 279
30 % 44 186 295
Entity #38 | Chains: m3
eL40 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 14 5077
95 % 1 14 5987
90 % 1 14 5890
70 % 1 14 5936
50 % 1 14 5693
40 % 1 14 5566
30 % 1 14 5316
Entity #39 | Chains: n3
60s ribosomal protein l41 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 63 699
95 % 5 77 750
90 % 5 78 770
70 % 46 157 286
50 % 46 157 337
40 % 46 157 353
30 % 46 157 367
Entity #4 | Chains: D3
60S ribosomal protein L5 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 34 1585
95 % 1 68 938
90 % 1 68 971
70 % 1 68 1013
50 % 44 177 291
40 % 44 179 294
30 % 44 179 318
Entity #40 | Chains: o3
eL42 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 68 703
95 % 1 68 951
90 % 1 68 975
70 % 43 163 281
50 % 44 175 299
40 % 44 175 311
30 % 44 176 332
Entity #41 | Chains: p3
eL43 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 68 689
95 % 1 68 945
90 % 1 68 978
70 % 1 71 953
50 % 44 178 284
40 % 44 179 296
30 % 66 202 256
Entity #42 | Chains: r3
eL28 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 34 1632
95 % 1 67 970
90 % 1 67 1008
70 % 1 67 1048
50 % 1 67 1082
40 % 1 68 1096
30 % 1 70 1087
Entity #43 | Chains: s3
uL10 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 14 5398
95 % 1 18 4621
90 % 1 20 4058
70 % 1 20 4052
50 % 33 69 980
40 % 33 69 1009
30 % 33 69 1047
Entity #44 | Chains: t3
Ribosomal protein L12 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 38 1383
95 % 1 38 1829
90 % 1 38 1883
70 % 3 56 1250
50 % 3 66 1096
40 % 3 66 1126
30 % 3 66 1167
Entity #45 | Chains: 23
P-site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #46 | Chains: 54
28S ribosomal RNA rna, length: 3543 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #47 | Chains: 74
5S ribosomal RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #48 | Chains: 84
5.8S ribosomal RNA rna, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #49 | Chains: NI
Nascent polypeptide-associated complex subunit alpha N-terminal region protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 82237
95 % 1 1 55395
90 % 1 1 50313
70 % 1 1 43954
50 % 1 1 39368
40 % 1 1 35586
30 % 1 1 31349
Entity #5 | Chains: E3
60S ribosomal protein L6 protein, length: 291 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2515
95 % 1 24 3234
90 % 1 24 3320
70 % 1 37 1967
50 % 1 37 2012
40 % 1 37 2044
30 % 1 37 2077
Entity #50 | Chains: NA
Nascent polypeptide-associated complex subunit alpha protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 85563
95 % 1 1 47734
90 % 1 1 58334
70 % 1 1 46939
50 % 1 1 40492
40 % 1 1 36606
30 % 1 1 32233
Entity #51 | Chains: NB
Transcription factor BTF3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74811
95 % 1 1 61995
90 % 1 1 58333
70 % 1 1 50594
50 % 1 1 43589
40 % 1 1 39350
30 % 1 1 34627
Entity #52 | Chains: TT
Tetratricopeptide repeat protein 5 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74810
95 % 1 1 57160
90 % 2 2 28572
70 % 2 2 26764
50 % 2 2 23446
40 % 2 2 21444
30 % 2 2 19173
Entity #53 | Chains: 1
Tubulin Beta protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74809
95 % 1 1 61994
90 % 1 1 58332
70 % 1 1 50593
50 % 1 1 43588
40 % 1 1 36604
30 % 1 1 32230
Entity #6 | Chains: F3
Ul30 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2161
95 % 1 68 946
90 % 1 68 979
70 % 1 68 1020
50 % 44 179 283
40 % 44 179 298
30 % 44 178 326
Entity #7 | Chains: G3
eL8 protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 18 3640
95 % 1 18 4438
90 % 1 18 4494
70 % 1 18 4466
50 % 1 18 4377
40 % 1 18 4296
30 % 1 18 4180
Entity #8 | Chains: H3
uL6 protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 34 1619
95 % 1 68 947
90 % 1 68 957
70 % 1 68 1021
50 % 43 187 267
40 % 44 189 269
30 % 111 260 205
Entity #9 | Chains: I3
60S ribosomal protein L10 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 33 1638
95 % 1 51 1320
90 % 1 68 964
70 % 1 80 830
50 % 44 170 311
40 % 44 170 324
30 % 44 170 346

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

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