Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication

Structural Similarities for the Entities in PDB 1QZW

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains B,D,F,H

Description: 7S RNA rna | Length: 47

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains A,C,E,G

Description: Signal recognition 54 kDa protein protein | Length: 440

No structure alignment results are available for 1QZW.A, 1QZW.C, 1QZW.E, 1QZW.G explicitly.

These chains are represented by chain 3DM5.A which has more than 50% sequence identity.

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View how chain 1QZW.G compares with the representative chain PDP:3DM5Aa. Select a comparison method: