3J9Y

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome


Structural Similarities for the Entities in PDB 3J9Y

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains a

Description: 16S ribosomal RNA rna | Length: 1539

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains p

Description: 30S ribosomal protein S16 protein | Length: 82

No structure alignment results are available for 3J9Y.p explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains q

Description: 30S ribosomal protein S17 protein | Length: 84

No structure alignment results are available for 3J9Y.q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains r

Description: 30S ribosomal protein S18 protein | Length: 75

No structure alignment results are available for 3J9Y.r explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains t

Description: 30S ribosomal protein S20 protein | Length: 87

No structure alignment results are available for 3J9Y.t explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains u

Description: 30S ribosomal protein S21 protein | Length: 71

No structure alignment results are available for 3J9Y.u explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains v

Description: P-site fMet-tRNAfMet rna | Length: 78

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #16 | Chains x

Description: mRNA rna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #17 | Chains w

Description: Tetracycline resistance protein TetM protein | Length: 639

No structure alignment results are available for 3J9Y.w explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains c

Description: 30S ribosomal protein S3 protein | Length: 233

No structure alignment results are available for 3J9Y.c explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #19 | Chains g

Description: 30S ribosomal protein S7 protein | Length: 179

No structure alignment results are available for 3J9Y.g explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains b

Description: 30S ribosomal protein S2 protein | Length: 240

No structure alignment results are available for 3J9Y.b explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains i

Description: 30S ribosomal protein S9 protein | Length: 130

No structure alignment results are available for 3J9Y.i explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains j

Description: 30S ribosomal protein S10 protein | Length: 103

No structure alignment results are available for 3J9Y.j explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains m

Description: 30S ribosomal protein S13 protein | Length: 118

No structure alignment results are available for 3J9Y.m explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains n

Description: 30S ribosomal protein S14 protein | Length: 102

No structure alignment results are available for 3J9Y.n explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #24 | Chains s

Description: 30S ribosomal protein S19 protein | Length: 92

No structure alignment results are available for 3J9Y.s explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains A

Description: 23S ribosomal RNA rna | Length: 2903

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #26 | Chains B

Description: 5S ribosomal RNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #27 | Chains C

Description: 50S ribosomal protein L2 protein | Length: 273

No structure alignment results are available for 3J9Y.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #28 | Chains D

Description: 50S ribosomal protein L3 protein | Length: 209

No structure alignment results are available for 3J9Y.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains E

Description: 50S ribosomal protein L4 protein | Length: 201

No structure alignment results are available for 3J9Y.E explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #3 | Chains d

Description: 30S ribosomal protein S4 protein | Length: 206

No structure alignment results are available for 3J9Y.d explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains F

Description: 50S ribosomal protein L5 protein | Length: 179

No structure alignment results are available for 3J9Y.F explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #31 | Chains G

Description: 50S ribosomal protein L6 protein | Length: 177

No structure alignment results are available for 3J9Y.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains H

Description: 50S ribosomal protein L9 protein | Length: 149

No structure alignment results are available for 3J9Y.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains I

Description: 50S ribosomal protein L11 protein | Length: 142

No structure alignment results are available for 3J9Y.I explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #34 | Chains J

Description: 50S ribosomal protein L13 protein | Length: 142

No structure alignment results are available for 3J9Y.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #35 | Chains K

Description: 50S ribosomal protein L14 protein | Length: 123

No structure alignment results are available for 3J9Y.K explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #36 | Chains L

Description: 50S ribosomal protein L15 protein | Length: 144

No structure alignment results are available for 3J9Y.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains M

Description: 50S ribosomal protein L16 protein | Length: 136

No structure alignment results are available for 3J9Y.M explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #38 | Chains N

Description: 50S ribosomal protein L17 protein | Length: 127

No structure alignment results are available for 3J9Y.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains O

Description: 50S ribosomal protein L18 protein | Length: 117

No structure alignment results are available for 3J9Y.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains e

Description: 30S ribosomal protein S5 protein | Length: 167

No structure alignment results are available for 3J9Y.e explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #40 | Chains P

Description: 50S ribosomal protein L19 protein | Length: 115

No structure alignment results are available for 3J9Y.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains Q

Description: 50S ribosomal protein L20 protein | Length: 118

No structure alignment results are available for 3J9Y.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains R

Description: 50S ribosomal protein L21 protein | Length: 103

No structure alignment results are available for 3J9Y.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains S

Description: 50S ribosomal protein L22 protein | Length: 110

No structure alignment results are available for 3J9Y.S explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #44 | Chains T

Description: 50S ribosomal protein L23 protein | Length: 100

No structure alignment results are available for 3J9Y.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains U

Description: 50S ribosomal protein L24 protein | Length: 104

No structure alignment results are available for 3J9Y.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains V

Description: 50S ribosomal protein L25 protein | Length: 94

No structure alignment results are available for 3J9Y.V explicitly.

It is represented by chain 1DFU.p which is 100% sequence identical.

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Entity #47 | Chains W

Description: 50S ribosomal protein L27 protein | Length: 85

No structure alignment results are available for 3J9Y.W explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains X

Description: 50S ribosomal protein L28 protein | Length: 78

No structure alignment results are available for 3J9Y.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #49 | Chains Y

Description: 50S ribosomal protein L29 protein | Length: 63

No structure alignment results are available for 3J9Y.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains f

Description: 30S ribosomal protein S6 protein | Length: 135

No structure alignment results are available for 3J9Y.f explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains Z

Description: 50S ribosomal protein L30 protein | Length: 59

No structure alignment results are available for 3J9Y.Z explicitly.

It is represented by chain 1BXY.a which is 100% sequence identical.

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Entity #51 | Chains 0

Description: 50S ribosomal protein L32 protein | Length: 57

No structure alignment results are available for 3J9Y.0 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #52 | Chains 1

Description: 50S ribosomal protein L33 protein | Length: 55

No structure alignment results are available for 3J9Y.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains 2

Description: 50S ribosomal protein L34 protein | Length: 46

No structure alignment results are available for 3J9Y.2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #54 | Chains 3

Description: 50S ribosomal protein L35 protein | Length: 65

No structure alignment results are available for 3J9Y.3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains 4

Description: 50S ribosomal protein L36 protein | Length: 38

No structure alignment results are available for 3J9Y.4 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains 5

Description: 50S ribosomal protein L10 protein | Length: 165

No structure alignment results are available for 3J9Y.5 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains 6

Description: 50S ribosomal protein L31 protein | Length: 70

No structure alignment results are available for 3J9Y.6 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #58 | Chains 7

Description: 50S ribosomal protein L7/L12 protein | Length: 69

No structure alignment results are available for 3J9Y.7 explicitly.

It is represented by chain 1CTF.a which is 100% sequence identical.

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Entity #6 | Chains h

Description: 30S ribosomal protein S8 protein | Length: 130

No structure alignment results are available for 3J9Y.h explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #7 | Chains k

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 3J9Y.k explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains l

Description: 30S ribosomal protein S12 protein | Length: 124

No structure alignment results are available for 3J9Y.l explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #9 | Chains o

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 3J9Y.o explicitly.

It is represented by chain 4A5U.B which is 100% sequence identical.

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References