Structural Similarities for the Entities in PDB 3JAK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E,J,K,L

Description: Tubulin alpha-1B chain protein | Length: 451

No structure alignment results are available for 3JAK.A, 3JAK.C, 3JAK.E, 3JAK.J, 3JAK.K, 3JAK.L explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B,D,F,G,H,I

Description: Tubulin beta chain protein | Length: 445

No structure alignment results are available for 3JAK.B, 3JAK.D, 3JAK.F, 3JAK.G, 3JAK.H, 3JAK.I explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains M,N

Description: Microtubule-associated protein RP/EB family member 3 protein | Length: 203

No structure alignment results are available for 3JAK.M, 3JAK.N explicitly.

These chains are represented by chain 3JAR.M which is 100% sequence identical.

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References