Crystal Structure of the Rotavirus Double Layered Particle

Structural Similarities for the Entities in PDB 3KZ4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B

Description: Inner capsid protein VP2 protein | Length: 880


Entity #2 | Chains C,D,E,F,G,H,I,J,K,L,M,N,O

Description: Intermediate capsid protein VP6 protein | Length: 397

No structure alignment results are available for 3KZ4.C, 3KZ4.D, 3KZ4.E, 3KZ4.F, 3KZ4.G, 3KZ4.H, 3KZ4.I, 3KZ4.J, 3KZ4.K, 3KZ4.L, 3KZ4.M, 3KZ4.N, 3KZ4.O explicitly.

These chains are represented by chain 1QHD.a which has more than 95% sequence identity.

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View how chain 3KZ4.O compares with the representative chain d1qhda1. Select a comparison method: