4TS2

Crystal structure of the Spinach RNA aptamer in complex with DFHBI, magnesium ions


Structural Similarities for the Entities in PDB 4TS2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains X

Description: Spinach aptamer RNA, bimolecular construct rna | Length: 44

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains Y

Description: Spinach aptamer RNA, bimolecular construct rna | Length: 47

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References