4V4I

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.


Structural Similarities for the Entities in PDB 4V4I

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains w

Description: 23S LARGE SUBUNIT RIBOSOMAL RNA rna | Length: 2889

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains H

Description: 50S ribosomal protein L13 protein | Length: 163

No structure alignment results are available for 4V4I.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains I

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 4V4I.I explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #12 | Chains J

Description: 50S ribosomal protein L15 protein | Length: 150

No structure alignment results are available for 4V4I.J explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #13 | Chains K

Description: 50S ribosomal protein L16 protein | Length: 141

No structure alignment results are available for 4V4I.K explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains L

Description: 50S ribosomal protein L17 protein | Length: 118

No structure alignment results are available for 4V4I.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains M

Description: 50S ribosomal protein L18 protein | Length: 112

No structure alignment results are available for 4V4I.M explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #16 | Chains N

Description: 50S ribosomal protein L19 protein | Length: 146

No structure alignment results are available for 4V4I.N explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #17 | Chains O

Description: 50S ribosomal protein L20 protein | Length: 118

No structure alignment results are available for 4V4I.O explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains P

Description: 50S ribosomal protein L21 protein | Length: 101

No structure alignment results are available for 4V4I.P explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #19 | Chains Q

Description: 50S ribosomal protein L22 protein | Length: 113

No structure alignment results are available for 4V4I.Q explicitly.

It is represented by chain 1I4J.a which has more than 95% sequence identity.

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Entity #2 | Chains x

Description: 5S LARGE SUBUNIT RIBOSOMAL RNA rna | Length: 121

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains R

Description: 50S ribosomal protein L23 protein | Length: 96

No structure alignment results are available for 4V4I.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains S

Description: 50S ribosomal protein L24 protein | Length: 110

No structure alignment results are available for 4V4I.S explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #22 | Chains T

Description: 50S ribosomal protein L25 protein | Length: 206

No structure alignment results are available for 4V4I.T explicitly.

It is represented by chain 1FEU.a which has more than 95% sequence identity.

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Entity #23 | Chains U

Description: 50S ribosomal protein L27 protein | Length: 85

No structure alignment results are available for 4V4I.U explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains V

Description: 50S ribosomal protein L28 protein | Length: 98

No structure alignment results are available for 4V4I.V explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #25 | Chains W

Description: 50S ribosomal protein L29 protein | Length: 72

No structure alignment results are available for 4V4I.W explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #26 | Chains X

Description: 50S ribosomal protein L30 protein | Length: 60

No structure alignment results are available for 4V4I.X explicitly.

It is represented by chain 1BXY.a which is 100% sequence identical.

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Entity #27 | Chains Y

Description: 50S ribosomal protein L32 protein | Length: 60

No structure alignment results are available for 4V4I.Y explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #28 | Chains Z

Description: 50S ribosomal protein L34 protein | Length: 49

No structure alignment results are available for 4V4I.Z explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #29 | Chains a

Description: 50S ribosomal protein L35 protein | Length: 65

No structure alignment results are available for 4V4I.a explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains A

Description: 50S ribosomal protein L1 protein | Length: 229

No structure alignment results are available for 4V4I.A explicitly.

It is represented by chain 4REO.A which has more than 95% sequence identity.

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Entity #30 | Chains b

Description: 50S ribosomal protein L36 protein | Length: 37

No structure alignment results are available for 4V4I.b explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains y

Description: 16S SMALL SUBUNIT RIBOSOMAL RNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #32 | Chains z

Description: P-site PHE-tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #33 | Chains 0

Description: E-TRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #34 | Chains 1

Description: MRNA rna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #35 | Chains c

Description: 30S ribosomal protein S2 protein | Length: 256

No structure alignment results are available for 4V4I.c explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #36 | Chains d

Description: 30S ribosomal protein S3 protein | Length: 239

No structure alignment results are available for 4V4I.d explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains e

Description: 30S ribosomal protein S4 protein | Length: 209

No structure alignment results are available for 4V4I.e explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains f

Description: 30S ribosomal protein S5 protein | Length: 162

No structure alignment results are available for 4V4I.f explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #39 | Chains g

Description: 30S ribosomal protein S6 protein | Length: 101

No structure alignment results are available for 4V4I.g explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #4 | Chains B

Description: 50S ribosomal protein L2 protein | Length: 276

No structure alignment results are available for 4V4I.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #40 | Chains h

Description: 30S ribosomal protein S7 protein | Length: 156

No structure alignment results are available for 4V4I.h explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #41 | Chains i

Description: 30S ribosomal protein S8 protein | Length: 138

No structure alignment results are available for 4V4I.i explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #42 | Chains j

Description: 30S ribosomal protein S9 protein | Length: 128

No structure alignment results are available for 4V4I.j explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #43 | Chains k

Description: 30S ribosomal protein S10 protein | Length: 105

No structure alignment results are available for 4V4I.k explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains l

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 4V4I.l explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #45 | Chains m

Description: 30S ribosomal protein S12 protein | Length: 132

No structure alignment results are available for 4V4I.m explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #46 | Chains n

Description: 30S ribosomal protein S13 protein | Length: 126

No structure alignment results are available for 4V4I.n explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #47 | Chains o

Description: 30S ribosomal protein S14 protein | Length: 61

No structure alignment results are available for 4V4I.o explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains p

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 4V4I.p explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #49 | Chains q

Description: 30S ribosomal protein S16 protein | Length: 88

No structure alignment results are available for 4V4I.q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains C

Description: 50S ribosomal protein L3 protein | Length: 206

No structure alignment results are available for 4V4I.C explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #50 | Chains r

Description: 30S ribosomal protein S17 protein | Length: 105

No structure alignment results are available for 4V4I.r explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #51 | Chains s

Description: 30S ribosomal protein S18 protein | Length: 88

No structure alignment results are available for 4V4I.s explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #52 | Chains t

Description: 30S ribosomal protein S19 protein | Length: 93

No structure alignment results are available for 4V4I.t explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #53 | Chains u

Description: 30S ribosomal protein S20 protein | Length: 106

No structure alignment results are available for 4V4I.u explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #54 | Chains v

Description: 30S ribosomal protein Thx protein | Length: 27

No structure alignment results are available for 4V4I.v explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains D

Description: 50S ribosomal protein L4 protein | Length: 205

No structure alignment results are available for 4V4I.D explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #7 | Chains E

Description: 50S ribosomal protein L5 protein | Length: 182

No structure alignment results are available for 4V4I.E explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #8 | Chains F

Description: 50S ribosomal protein L6 protein | Length: 180

No structure alignment results are available for 4V4I.F explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #9 | Chains G

Description: 50S ribosomal protein L9 protein | Length: 148

No structure alignment results are available for 4V4I.G explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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References