4V8P

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.


Structural Similarities for the Entities in PDB 4V8P

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A1,D1,F1,H1

Description: 26S RRNA rna | Length: 3354

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains AK,DK,FK,HK

Description: UBIQUITIN-60S RIBOSOMAL PROTEIN L40 protein | Length: 129

No structure alignment results are available for 4V8P.AK, 4V8P.DK, 4V8P.FK, 4V8P.HK explicitly.

These chains are represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #11 | Chains AL,DL,FL,HL

Description: RPL34 protein | Length: 123

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Entity #12 | Chains AM,DM,FM,HM

Description: RIBOSOMAL PROTEIN L22 protein | Length: 118

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Entity #13 | Chains AN,DN,FN,HN

Description: RPL27 protein | Length: 144

No structure alignment results are available for 4V8P.AN, 4V8P.DN, 4V8P.FN, 4V8P.HN explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #14 | Chains AO,DO,FO,HO

Description: RPL28 protein | Length: 134

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Entity #15 | Chains AP,DP,FP,HP

Description: RPL38 protein | Length: 89

No structure alignment results are available for 4V8P.AP, 4V8P.DP, 4V8P.FP, 4V8P.HP explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #16 | Chains AQ,DQ,FQ,HQ

Description: 60S RIBOSOMAL PROTEIN L36 protein | Length: 104

No structure alignment results are available for 4V8P.AQ, 4V8P.DQ, 4V8P.FQ, 4V8P.HQ explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #17 | Chains AT,DT,FT,HT

Description: RPL29 protein | Length: 66

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Entity #18 | Chains AU,DU,FU,HU

Description: RPL13 protein | Length: 206

No structure alignment results are available for 4V8P.AU, 4V8P.DU, 4V8P.FU, 4V8P.HU explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #19 | Chains AX,DX,FX,HX

Description: RPL18A protein | Length: 189

No structure alignment results are available for 4V8P.AX, 4V8P.DX, 4V8P.FX, 4V8P.HX explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #2 | Chains AA,DA,FA,HA

Description: RIBOSOMAL PROTEIN L37 protein | Length: 94

No structure alignment results are available for 4V8P.AA, 4V8P.DA, 4V8P.FA, 4V8P.HA explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains B2,C2,E2,G2

Description: 5.8S RRNA rna | Length: 154

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #21 | Chains B3,C3,E3,G3

Description: 5S RRNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #22 | Chains BA,CA,EA,GA

Description: RPL8 protein | Length: 264

No structure alignment results are available for 4V8P.BA, 4V8P.CA, 4V8P.EA, 4V8P.GA explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #23 | Chains BB,CB,EB,GB

Description: RIBOSOMAL PROTEIN L3 protein | Length: 391

No structure alignment results are available for 4V8P.BB, 4V8P.CB, 4V8P.EB, 4V8P.GB explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains BC,CC,EC,GC

Description: RPL4 protein | Length: 410

No structure alignment results are available for 4V8P.BC, 4V8P.CC, 4V8P.EC, 4V8P.GC explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #25 | Chains BD,CD,ED,GD

Description: 60S RIBOSOMAL PROTEIN L11 protein | Length: 172

No structure alignment results are available for 4V8P.BD, 4V8P.CD, 4V8P.ED, 4V8P.GD explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains BE,CE,EE,GE

Description: 60S RIBOSOMAL PROTEIN L9 protein | Length: 188

No structure alignment results are available for 4V8P.BE, 4V8P.CE, 4V8P.EE, 4V8P.GE explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #27 | Chains BF,CF,EF,GF

Description: RPL7A protein | Length: 255

No structure alignment results are available for 4V8P.BF, 4V8P.CF, 4V8P.EF, 4V8P.GF explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #28 | Chains BG,CG,EG,GG

Description: RPLP0 protein | Length: 123

Entity #29 | Chains BH,CH,EH,GH

Description: 60S RIBOSOMAL PROTEIN L10 protein | Length: 215

No structure alignment results are available for 4V8P.BH, 4V8P.CH, 4V8P.EH, 4V8P.GH explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains AB,DB,FB,HB

Description: RPL39 protein | Length: 52

No structure alignment results are available for 4V8P.AB, 4V8P.DB, 4V8P.FB, 4V8P.HB explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains BI,CI,EI,GI

Description: 60S RIBOSOMAL PROTEIN L13A protein | Length: 198

No structure alignment results are available for 4V8P.BI, 4V8P.CI, 4V8P.EI, 4V8P.GI explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #31 | Chains BJ,CJ,EJ,GJ

Description: RPL23 protein | Length: 141

No structure alignment results are available for 4V8P.BJ, 4V8P.CJ, 4V8P.EJ, 4V8P.GJ explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #32 | Chains BK,CK,EK,GK

Description: 60S RIBOSOMAL PROTEIN L27A protein | Length: 149

No structure alignment results are available for 4V8P.BK, 4V8P.CK, 4V8P.EK, 4V8P.GK explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #33 | Chains BL,CL,EL,GL

Description: RIBOSOMAL PROTEIN L15 protein | Length: 204

No structure alignment results are available for 4V8P.BL, 4V8P.CL, 4V8P.EL, 4V8P.GL explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #34 | Chains BM,CM,EM,GM

Description: 60S RIBOSOMAL PROTEIN L5 protein | Length: 301

No structure alignment results are available for 4V8P.BM, 4V8P.CM, 4V8P.EM, 4V8P.GM explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #35 | Chains BN,CN,EN,GN

Description: RPL18 protein | Length: 181

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Entity #36 | Chains BO,EO,GO

Description: RPL19 protein | Length: 185

No structure alignment results are available for 4V8P.BO, 4V8P.EO, 4V8P.GO explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #37 | Chains BP,CP,EP,GP

Description: 60S RIBOSOMAL PROTEIN L21 protein | Length: 157

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Entity #38 | Chains BQ,CQ,EQ,GQ

Description: RPL17 protein | Length: 183

No structure alignment results are available for 4V8P.BQ, 4V8P.CQ, 4V8P.EQ, 4V8P.GQ explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #39 | Chains BR,CR,ER,GR

Description: RPL23A protein | Length: 150

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Entity #4 | Chains AC,DC,FC,HC

Description: 60S RIBOSOMAL PROTEIN L36A protein | Length: 109

No structure alignment results are available for 4V8P.AC, 4V8P.DC, 4V8P.FC, 4V8P.HC explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #40 | Chains BS,CS,ES,GS

Description: RPL26 protein | Length: 135

No structure alignment results are available for 4V8P.BS, 4V8P.CS, 4V8P.ES, 4V8P.GS explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #41 | Chains BT,CT,ET,GT

Description: RPL24 protein | Length: 158

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Entity #42 | Chains BU,CU,EU,GU

Description: RPL35 protein | Length: 124

No structure alignment results are available for 4V8P.BU, 4V8P.CU, 4V8P.EU, 4V8P.GU explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #43 | Chains BV,CV,EV,GV

Description: 60S RIBOSOMAL PROTEIN L7 protein | Length: 239

No structure alignment results are available for 4V8P.BV, 4V8P.CV, 4V8P.EV, 4V8P.GV explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains BW,CW,EW,GW

Description: 60S RIBOSOMAL PROTEIN L31 protein | Length: 111

No structure alignment results are available for 4V8P.BW, 4V8P.CW, 4V8P.EW, 4V8P.GW explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #45 | Chains BX,CX,EX,GX

Description: 60S RIBOSOMAL PROTEIN L32 protein | Length: 134

No structure alignment results are available for 4V8P.BX, 4V8P.CX, 4V8P.EX, 4V8P.GX explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #46 | Chains BY,CY,EY,GY

Description: RPL37A protein | Length: 103

No structure alignment results are available for 4V8P.BY, 4V8P.CY, 4V8P.EY, 4V8P.GY explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #47 | Chains CO

Description: RPL19 protein | Length: 185

No structure alignment results are available for 4V8P.CO explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains AE,DE,FE,HE

Description: RPL6 protein | Length: 191

No structure alignment results are available for 4V8P.AE, 4V8P.DE, 4V8P.FE, 4V8P.HE explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains AF,DF,FF,HF

Description: RPL14 protein | Length: 126

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Entity #7 | Chains AG,DG,FG,HG

Description: RPL30 protein | Length: 104

No structure alignment results are available for 4V8P.AG, 4V8P.DG, 4V8P.FG, 4V8P.HG explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains AH,DH,FH,HH

Description: RPL35A protein | Length: 113

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Entity #9 | Chains AJ,DJ,FJ,HJ

Description: TRANSLATION INITIATION FACTOR EIF-6, PUTATIVE FAMILY PROTEIN protein | Length: 248

No structure alignment results are available for 4V8P.AJ, 4V8P.DJ, 4V8P.FJ, 4V8P.HJ explicitly.

These chains are represented by chain 5M3Q.A which has more than 50% sequence identity.

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References