Structural Similarities for the Entities in PDB 4YBB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains AA,BA

Description: 16S rRNA rna | Length: 1534

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains AJ,BJ

Description: 30S ribosomal protein S10 protein | Length: 99

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Entity #11 | Chains AK,BK

Description: 30S ribosomal protein S11 protein | Length: 117

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Entity #12 | Chains AL,BL

Description: 30S ribosomal protein S12 protein | Length: 123

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Entity #13 | Chains AM,BM

Description: 30S ribosomal protein S13 protein | Length: 114

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Entity #14 | Chains AN,BN

Description: 30S ribosomal protein S14 protein | Length: 100

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Entity #15 | Chains AO,BO

Description: 30S ribosomal protein S15 protein | Length: 88

No structure alignment results are available for 4YBB.AO, 4YBB.BO explicitly.

These chains are represented by chain 4A5U.B which is 100% sequence identical.

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Entity #16 | Chains AP,BP

Description: 30S ribosomal protein S16 protein | Length: 82

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Entity #17 | Chains AQ,BQ

Description: 30S ribosomal protein S17 protein | Length: 80

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Entity #18 | Chains AR,BR

Description: 30S ribosomal protein S18 protein | Length: 55

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Entity #19 | Chains AS,BS

Description: 30S ribosomal protein S19 protein | Length: 79

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Entity #2 | Chains AB,BB

Description: 30S ribosomal protein S2 protein | Length: 224

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Entity #20 | Chains AT,BT

Description: 30S ribosomal protein S20 protein | Length: 86

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Entity #21 | Chains AU,BU

Description: 30S ribosomal protein S21 protein | Length: 56

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Entity #22 | Chains CA

Description: 23S rRNA rna | Length: 2904

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #23 | Chains CB,DB

Description: 5S rRNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #24 | Chains CC,DC

Description: 50S ribosomal protein L2 protein | Length: 271

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Entity #25 | Chains CD

Description: 50S ribosomal protein L3 protein | Length: 209

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Entity #26 | Chains CE,DE

Description: 50S ribosomal protein L4 protein | Length: 201

No structure alignment results are available for 4YBB.CE, 4YBB.DE explicitly.

These chains are represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #27 | Chains CF,DF

Description: 50S ribosomal protein L5 protein | Length: 177

No structure alignment results are available for 4YBB.CF, 4YBB.DF explicitly.

These chains are represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #28 | Chains CG,DG

Description: 50S ribosomal protein L6 protein | Length: 176

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Entity #29 | Chains CH,DH

Description: 50S ribosomal protein L9 protein | Length: 149

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Entity #3 | Chains AC,BC

Description: 30S ribosomal protein S3 protein | Length: 206

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Entity #30 | Chains CJ,DJ

Description: 50S ribosomal protein L11 protein | Length: 134

No structure alignment results are available for 4YBB.CJ, 4YBB.DJ explicitly.

These chains are represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #31 | Chains CK,DK

Description: 50S ribosomal protein L13 protein | Length: 142

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Entity #32 | Chains CL,DL

Description: 50S ribosomal protein L14 protein | Length: 123

No structure alignment results are available for 4YBB.CL, 4YBB.DL explicitly.

These chains are represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #33 | Chains CM,DM

Description: 50S ribosomal protein L15 protein | Length: 144

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Entity #34 | Chains CN,DN

Description: 50S ribosomal protein L16 protein | Length: 136

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Entity #35 | Chains CO,DO

Description: 50S ribosomal protein L17 protein | Length: 125

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Entity #36 | Chains CP,DP

Description: 50S ribosomal protein L18 protein | Length: 117

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Entity #37 | Chains CQ,DQ

Description: 50S ribosomal protein L19 protein | Length: 114

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Entity #38 | Chains CR,DR

Description: 50S ribosomal protein L20 protein | Length: 117

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Entity #39 | Chains CS,DS

Description: 50S ribosomal protein L21 protein | Length: 103

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Entity #4 | Chains AD,BD

Description: 30S ribosomal protein S4 protein | Length: 205

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Entity #40 | Chains CT,DT

Description: 50S ribosomal protein L22 protein | Length: 110

No structure alignment results are available for 4YBB.CT, 4YBB.DT explicitly.

These chains are represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #41 | Chains CU,DU

Description: 50S ribosomal protein L23 protein | Length: 93

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Entity #42 | Chains CV,DV

Description: 50S ribosomal protein L24 protein | Length: 102

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Entity #43 | Chains CW,DW

Description: 50S ribosomal protein L25 protein | Length: 94

No structure alignment results are available for 4YBB.CW, 4YBB.DW explicitly.

These chains are represented by chain 1DFU.p which is 100% sequence identical.

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Entity #44 | Chains CX,DX

Description: 50S ribosomal protein L27 protein | Length: 76

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Entity #45 | Chains CY,DY

Description: 50S ribosomal protein L28 protein | Length: 77

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Entity #46 | Chains CZ,DZ

Description: 50S ribosomal protein L29 protein | Length: 62

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Entity #47 | Chains C0,D0

Description: 50S ribosomal protein L30 protein | Length: 58

No structure alignment results are available for 4YBB.C0, 4YBB.D0 explicitly.

These chains are represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #48 | Chains C1,D1

Description: 50S ribosomal protein L32 protein | Length: 56

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Entity #49 | Chains C2,D2

Description: 50S ribosomal protein L33 protein | Length: 51

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Entity #5 | Chains AE,BE

Description: 30S ribosomal protein S5 protein | Length: 155

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Entity #50 | Chains C3,D3

Description: 50S ribosomal protein L34 protein | Length: 46

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Entity #51 | Chains C4,D4

Description: 50S ribosomal protein L35 protein | Length: 64

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Entity #52 | Chains C5,D5

Description: 50S ribosomal protein L36 protein | Length: 38

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Entity #53 | Chains DA

Description: 23S rRNA rna | Length: 2903

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #54 | Chains DD

Description: 50S ribosomal protein L3 protein | Length: 209

No structure alignment results are available for 4YBB.DD explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains DI

Description: 50S ribosomal protein L10 protein | Length: 135

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Entity #6 | Chains AF,BF

Description: 30S ribosomal protein S6 protein | Length: 106

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Entity #7 | Chains AG,BG

Description: 30S ribosomal protein S7 protein | Length: 151

No structure alignment results are available for 4YBB.AG, 4YBB.BG explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains AH,BH

Description: 30S ribosomal protein S8 protein | Length: 129

No structure alignment results are available for 4YBB.AH, 4YBB.BH explicitly.

These chains are represented by chain 1SEI.a which has more than 40% sequence identity.

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Entity #9 | Chains AI,BI

Description: 30S ribosomal protein S9 protein | Length: 127

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References